##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920897_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4356038 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.401485248751275 31.0 28.0 33.0 18.0 34.0 2 28.418028951997204 31.0 28.0 33.0 16.0 34.0 3 28.496690570651587 31.0 28.0 34.0 16.0 34.0 4 31.960424817230702 35.0 32.0 37.0 20.0 37.0 5 31.91551106762613 35.0 32.0 37.0 20.0 37.0 6 32.0417262200192 35.0 32.0 37.0 22.0 37.0 7 31.87132458440445 35.0 32.0 37.0 19.0 37.0 8 31.813576695152797 35.0 32.0 37.0 19.0 37.0 9 33.062204461944546 37.0 32.0 39.0 18.0 39.0 10-11 32.86157570250765 37.0 32.0 39.0 17.5 39.0 12-13 32.68883237474053 37.0 32.0 39.0 17.0 39.0 14-15 33.427694156938024 38.0 32.0 40.0 17.0 41.0 16-17 33.32005574790669 38.0 32.0 40.0 17.0 41.0 18-19 33.20272320856705 38.0 32.0 40.0 16.0 41.0 20-21 33.10159622115326 38.0 32.0 40.0 12.5 41.0 22-23 32.87744562834392 38.0 32.0 40.0 10.5 41.0 24-25 32.68314693306165 38.0 31.0 40.0 10.0 41.0 26-27 32.710741044958745 38.0 31.5 40.0 10.0 41.0 28-29 32.550317168950315 38.0 31.0 40.0 9.0 41.0 30-31 32.30703497076931 37.5 31.0 40.0 8.5 41.0 32-33 32.055529015127966 37.0 30.0 40.0 8.0 41.0 34-35 31.72870519035876 37.0 30.0 40.0 4.0 41.0 36-37 31.419263330577007 37.0 30.0 40.0 2.0 41.0 38-39 31.211516061154654 37.0 30.0 40.0 2.0 41.0 40-41 31.013023302367884 36.0 29.5 40.0 2.0 41.0 42-43 30.77559929458834 36.0 29.0 39.5 2.0 41.0 44-45 30.49310703901114 36.0 28.0 39.0 2.0 40.0 46-47 30.23981115408084 36.0 28.0 39.0 2.0 40.0 48-49 29.93628223628903 35.0 27.0 39.0 2.0 40.0 50-51 28.807106251139224 34.0 25.5 38.0 2.0 39.5 52-53 29.258494531039446 34.5 26.5 38.5 2.0 39.5 54-55 29.902071676142405 35.0 28.0 39.0 2.0 40.0 56-57 29.849925551613644 35.0 28.0 39.0 2.0 40.0 58-59 29.60711752284989 35.0 27.5 39.0 2.0 40.0 60-61 29.282229746388808 35.0 26.5 39.0 2.0 40.0 62-63 28.894541438802875 34.5 26.0 38.5 2.0 40.0 64-65 28.477009842430206 34.0 26.0 38.0 2.0 40.0 66-67 28.088951703359797 34.0 25.5 37.5 2.0 40.0 68-69 27.644181363890766 34.0 24.0 37.0 2.0 39.5 70-71 27.30601340025041 33.5 24.0 36.5 2.0 39.0 72-73 26.846326868590218 33.0 22.5 36.0 2.0 39.0 74-75 26.401415690129426 33.0 21.5 35.5 2.0 38.5 76-77 25.982996704803767 32.5 20.0 35.0 2.0 37.5 78-79 25.515194885811372 32.0 18.5 35.0 2.0 37.0 80-81 25.05428786433911 32.0 17.0 35.0 2.0 36.0 82-83 24.567782466544138 31.5 10.0 35.0 2.0 36.0 84-85 24.16357880716376 31.0 6.5 34.0 2.0 35.5 86-87 23.69340017235846 31.0 2.0 34.0 2.0 35.0 88-89 23.145099973875343 31.0 2.0 34.0 2.0 35.0 90-91 22.630325998074397 30.0 2.0 34.0 2.0 35.0 92-93 22.078378792838812 30.0 2.0 34.0 2.0 35.0 94-95 21.42504909277651 29.5 2.0 34.0 2.0 35.0 96-97 20.76664666378025 29.0 2.0 34.0 2.0 35.0 98 20.358320106482083 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 240129.0 3 39850.0 4 29135.0 5 23910.0 6 22372.0 7 22717.0 8 25858.0 9 29428.0 10 32275.0 11 34651.0 12 35570.0 13 35233.0 14 33243.0 15 35101.0 16 37402.0 17 40262.0 18 41751.0 19 41083.0 20 42921.0 21 45556.0 22 49869.0 23 55331.0 24 62696.0 25 72503.0 26 83192.0 27 95712.0 28 110518.0 29 128118.0 30 147906.0 31 173070.0 32 205022.0 33 246994.0 34 306441.0 35 385788.0 36 483837.0 37 522574.0 38 307629.0 39 30391.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.38313322309296 17.872420734776046 12.702944597760904 25.04150144437009 2 16.19735741732113 19.48646400834722 38.93223898514391 25.383939589187737 3 19.57066958544487 23.2674059588354 28.895628652060378 28.266295803659357 4 13.294923770572165 15.304870642675574 36.37698466181393 35.023220924938336 5 14.438910702394894 36.71422010975638 34.17113269500126 14.675736492847467 6 33.962279314564306 34.700073088219526 17.085490714030342 14.25215688318583 7 29.662957878517155 31.279666229730875 20.65576646183723 18.401609429914743 8 27.01741843174421 34.03856079140126 19.92039702306172 19.023623753792805 9 27.00382779029935 15.497270684966477 19.340097584089026 38.15880394064515 10-11 25.823208113246054 25.075601974914353 27.537541577355746 21.563648334483844 12-13 26.435582123488853 22.414260178511654 27.351695236276097 23.798462461723396 14-15 23.46784456831528 24.109436861402223 24.836224309591525 27.586494260690976 16-17 23.669482931716534 27.01889149768962 25.697138668281077 23.614486902312773 18-19 23.6826648983353 26.268918418491694 26.99669012002262 23.051726563150385 20-21 24.501709331017466 25.53641748112614 26.642049083532065 23.319824104324333 22-23 24.060758121885065 25.422520250351898 26.515342401253573 24.00137922650946 24-25 23.838029746309854 25.576921972504934 26.621591975456827 23.963456305728386 26-27 23.69577396061146 25.793843382485633 26.575645564019272 23.934737092883637 28-29 23.748993620039162 26.01969690879125 26.437409196101964 23.793900275067617 30-31 23.929372879681925 25.772938482351833 26.231076484193938 24.066612153772297 32-33 23.704844195555122 25.779010743780212 26.247373524483887 24.268771536180783 34-35 24.161687384213113 25.773818613844234 26.226082802467083 23.83841119947557 36-37 24.259245264951034 25.514433441072416 26.187138341941115 24.039182952035436 38-39 23.981112686745217 25.69419098415167 26.25513440881605 24.06956192028706 40-41 24.145328815498416 25.58917149704411 26.39096417639854 23.87453551105893 42-43 24.019112568815977 25.51243906574761 26.20839413454255 24.260054230893857 44-45 23.916840991164996 25.55926356850008 26.3531046048404 24.170790835494525 46-47 24.076041066813374 25.55777496871496 26.138474248654763 24.227709715816907 48-49 23.889878592894412 25.617291063625803 26.123084865133944 24.369745478345838 50-51 23.711062948816082 25.788247245183427 26.284587234677037 24.216102571323454 52-53 23.95575586818951 25.529222855671023 26.327854892197706 24.187166383941765 54-55 23.5767373750033 25.48037783416264 26.516669666283843 24.426215124550215 56-57 23.59606664794037 25.59216916553604 26.435716955685184 24.376047230838406 58-59 23.585607139729035 25.33043374038271 26.448759260027565 24.63519985986069 60-61 23.426720970695072 25.295576396304913 26.78717750259485 24.490525130405167 62-63 23.407056633696865 25.369168693835594 26.745526985364627 24.478247687102918 64-65 23.356698440691538 25.344573458043573 26.507690470052342 24.791037631212546 66-67 23.327822622773795 25.364344610993268 26.448239413312287 24.85959335292065 68-69 23.59459006857671 25.12659105375966 26.430056793238705 24.848762084424926 70-71 23.411892977442463 24.99701040792782 26.546264254133067 25.04483236049665 72-73 23.43885834992367 24.974430552066238 26.576824859159252 25.009886238850836 74-75 23.374539247928237 25.18121139284898 26.50509080292509 24.9391585562977 76-77 23.475063901064086 24.888638129373945 26.6478550963186 24.98844287324337 78-79 23.486274730654696 24.968803981205113 26.569299386076175 24.97562190206402 80-81 23.594686892682752 24.889939946719647 26.532132697753326 24.98324046284428 82-83 23.523058510047075 24.84950723792352 26.622755019333727 25.004679232695683 84-85 23.520601830628824 24.78631759986473 26.655992528948254 25.037088040558192 86-87 23.511732701066375 24.798831129166814 26.65044156267721 25.038994607089606 88-89 23.623879689060786 24.58954480149225 26.536901276684976 25.249674232761986 90-91 23.573703394996453 24.603668271483606 26.59539445644717 25.227233877072774 92-93 23.824298935387983 24.40241117943974 26.639268924644195 25.134020960528087 94-95 23.66921607241773 24.296333258117052 26.74647194749466 25.28797872197056 96-97 23.86207049073658 24.057805781246202 26.75704761655741 25.3230761114598 98 23.907459276566893 23.949638002410016 26.696599510118634 25.446303210904457 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 63.0 1 61.0 2 99.0 3 164.0 4 183.0 5 221.5 6 340.0 7 617.5 8 941.5 9 1142.0 10 1241.0 11 1323.5 12 1503.0 13 1724.0 14 1900.5 15 2091.5 16 2294.5 17 2330.5 18 2345.5 19 2446.5 20 2546.0 21 2715.5 22 2902.0 23 3299.0 24 3922.5 25 4925.0 26 6383.0 27 8256.5 28 10911.0 29 14646.5 30 20338.0 31 29159.0 32 37996.0 33 46307.0 34 56697.0 35 69246.0 36 82241.0 37 94961.0 38 107388.0 39 118353.0 40 128476.0 41 138044.5 42 148940.0 43 160845.0 44 170596.5 45 178692.5 46 186730.0 47 192833.5 48 196662.5 49 196887.5 50 195369.0 51 193824.5 52 190612.0 53 188102.5 54 181974.5 55 172034.0 56 158443.0 57 141709.0 58 127974.5 59 112442.5 60 94481.0 61 78500.5 62 64225.0 63 49555.5 64 36567.5 65 27837.0 66 21646.5 67 17091.5 68 13170.5 69 10115.0 70 7677.0 71 5833.5 72 4683.5 73 3799.0 74 2884.0 75 2057.5 76 1473.0 77 966.5 78 583.5 79 325.5 80 180.5 81 115.0 82 71.0 83 48.0 84 37.0 85 20.0 86 14.0 87 10.0 88 8.5 89 9.5 90 9.0 91 4.5 92 3.0 93 4.5 94 3.5 95 2.5 96 3.0 97 2.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3771776095617164 2 0.024242212763065887 3 0.0181587029314253 4 0.016046691971006683 5 0.021533329139920267 6 0.023576470177716538 7 0.0162303450979996 8 0.009687702448876708 9 0.0 10-11 2.2956640874115422E-5 12-13 0.005601420373284163 14-15 0.003592714296799064 16-17 0.006175336395137048 18-19 0.037889935762727506 20-21 0.07938406414269114 22-23 0.09925303681923804 24-25 0.06641356204881592 26-27 0.07517152054229095 28-29 0.05883787056035782 30-31 0.05344305995494071 32-33 0.01990340763785807 34-35 0.33399616807750526 36-37 0.511141087382617 38-39 0.46412588687242856 40-41 0.47354958795125296 42-43 0.4240895051879713 44-45 0.3991241582373708 46-47 0.39723023536525626 48-49 0.3883804503082847 50-51 0.3850861723428492 52-53 0.444727525333801 54-55 0.4447504819746752 56-57 0.4157332879097932 58-59 0.40169530201527165 60-61 0.415871027755038 62-63 0.39644970957553627 64-65 0.444716047013364 66-67 0.464619454651222 68-69 0.4076525503221047 70-71 0.3668700778092386 72-73 0.3537274009088075 74-75 0.3358671343087457 76-77 0.3342716477679947 78-79 0.3337551233483271 80-81 0.34953781394928146 82-83 0.34546301019412595 84-85 0.3447169193657172 86-87 0.3308511082777515 88-89 0.37380298335322143 90-91 0.35252217726291646 92-93 0.3426508216870468 94-95 0.34945746570622205 96-97 0.3495492922697185 98 0.34405117678036784 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4356038.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.03436792810723 #Duplication Level Percentage of deduplicated Percentage of total 1 75.23032446310825 41.40253355853585 2 12.104330352714548 13.323083403092967 3 4.921468116778735 8.125496612557496 4 2.532207251206933 5.574337021325737 5 1.439855649440793 3.962077278734419 6 0.9488302887094742 3.1330965126101646 7 0.6233400678785559 2.401358864797185 8 0.422274541043818 1.8591689966782479 9 0.3071042674728367 1.5211160323552753 >10 1.3847260085308641 13.040628348644812 >50 0.05926520879992477 2.2254016332425732 >100 0.024219061575522418 2.3263990151068894 >500 0.001341859990260454 0.49379199671862856 >1k 7.128627496429235E-4 0.611510725599667 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3773984524469255E-4 2 0.0 2.2956640874115422E-5 0.0 0.0 1.3773984524469255E-4 3 0.0 2.2956640874115422E-5 0.0 0.0 1.3773984524469255E-4 4 0.0 4.5913281748230844E-5 0.0 0.0 1.3773984524469255E-4 5 0.0 6.886992262234627E-5 0.0 0.0 1.8365312699292338E-4 6 0.0 6.886992262234627E-5 0.0 0.0 2.0660976786703882E-4 7 0.0 9.182656349646169E-5 0.0 0.0 2.0660976786703882E-4 8 0.0 9.182656349646169E-5 0.0 0.0 2.2956640874115424E-4 9 0.0 9.182656349646169E-5 0.0 2.2956640874115422E-5 2.2956640874115424E-4 10-11 0.0 1.1478320437057712E-4 0.0 2.2956640874115422E-5 2.2956640874115424E-4 12-13 0.0 1.1478320437057712E-4 0.0 3.443496131117314E-5 6.198293036011164E-4 14-15 0.0 1.1478320437057712E-4 0.0 6.886992262234627E-5 6.886992262234627E-4 16-17 0.0 1.1478320437057712E-4 0.0 9.182656349646169E-5 7.805257897199243E-4 18-19 0.0 1.1478320437057712E-4 0.0 1.1478320437057712E-4 8.608740327793284E-4 20-21 0.0 2.2956640874115424E-4 0.0 2.1808808830409653E-4 9.5270059627579E-4 22-23 0.0 2.2956640874115424E-4 0.0 4.017412152970199E-4 9.871355575869632E-4 24-25 0.0 2.4104472917821194E-4 0.0 0.0010100921984610787 9.871355575869632E-4 26-27 0.0 2.525230496152697E-4 0.0 0.0017906179881810032 0.0011822670050169442 28-29 0.0 2.754796904893851E-4 0.0 0.006600034251308184 0.001193745325454002 30-31 0.0 3.099146518005582E-4 0.0 0.02868432277220722 0.001193745325454002 32-33 0.0 3.213929722376159E-4 0.0 0.07606682953638146 0.0012970502093875213 34-35 0.0 3.213929722376159E-4 0.0 0.1409193400057575 0.0013314851706986946 36-37 0.0 3.213929722376159E-4 0.0 0.25241974473133616 0.0013314851706986946 38-39 0.0 3.9026289485996217E-4 0.0 0.43921793152401334 0.0013314851706986946 40-41 0.0 3.9026289485996217E-4 0.0 0.6539887852218003 0.0013544418115728099 42-43 0.0 3.9026289485996217E-4 0.0 0.872547484663816 0.0013888767728839832 44-45 0.0 3.9026289485996217E-4 0.0 1.1365144197548323 0.0014118334137580985 46-47 0.0 4.017412152970199E-4 0.0 1.4544179825795827 0.0014233117341951563 48-49 0.0 4.476544970452508E-4 0.0 1.7966555847308954 0.001469225015943387 50-51 0.0 4.5913281748230847E-4 0.0 2.1693796059630337 0.0015266166181286756 52-53 2.2956640874115422E-5 4.820894583564239E-4 0.0 2.545994777823334 0.001629921502062195 54-55 2.2956640874115422E-5 5.394810605417125E-4 0.0 2.964907560494192 0.001629921502062195 56-57 2.2956640874115422E-5 5.509593809787702E-4 0.0 3.4494992927058945 0.0016643564633733682 58-59 2.2956640874115422E-5 5.96872662727001E-4 0.0 3.977869339064535 0.0017217480655586568 60-61 2.2956640874115422E-5 5.96872662727001E-4 0.0 4.533798832792551 0.0017791396677439453 62-63 2.2956640874115422E-5 5.96872662727001E-4 0.0 5.0883624063885575 0.0018594879108033494 64-65 2.2956640874115422E-5 6.657425853493473E-4 0.0 5.6819981827523085 0.0018939228721145222 66-67 2.2956640874115422E-5 6.657425853493473E-4 0.0 6.356418378352071 0.001916879512988638 68-69 2.2956640874115422E-5 6.657425853493473E-4 0.0 7.100810415336138 0.0019283578334256955 70-71 2.2956640874115422E-5 6.657425853493473E-4 0.0 7.877605750914019 0.0019398361538627532 72-73 2.2956640874115422E-5 6.657425853493473E-4 0.0 8.663721482686789 0.002031662717359215 74-75 2.2956640874115422E-5 6.657425853493473E-4 0.0 9.464472073016811 0.0021234892808556765 76-77 2.2956640874115422E-5 6.657425853493473E-4 0.0 10.326815330812082 0.0021349676012927346 78-79 2.2956640874115422E-5 6.657425853493473E-4 0.0 11.284061341980946 0.00215792424216685 80-81 2.2956640874115422E-5 6.657425853493473E-4 0.0 12.27033602553513 0.0022153158443521384 82-83 2.2956640874115422E-5 6.657425853493473E-4 0.0 13.262958220291008 0.0022841857669744846 84-85 2.2956640874115422E-5 6.772209057864049E-4 0.0 14.268068827682402 0.002387490650908004 86 2.2956640874115422E-5 6.886992262234627E-4 0.0 15.029575040438123 0.002387490650908004 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 8175 0.0 33.552917 1 GGTATCA 5210 0.0 29.680649 1 TCAACGC 9695 0.0 27.911758 4 CAACGCA 9645 0.0 27.723581 5 ATCAACG 9790 0.0 27.547209 3 TATCAAC 10085 0.0 27.061634 2 AACGCAG 10225 0.0 26.551954 6 GTACATG 13120 0.0 26.203457 1 TACATGG 13535 0.0 24.67096 2 ACATGGG 13725 0.0 23.759663 3 ACGCAGA 11795 0.0 22.859547 7 CGCAGAG 12265 0.0 21.720104 8 GAGTACA 9510 0.0 19.84153 1 CATGGGG 9430 0.0 19.600916 4 AGTACAT 9740 0.0 18.130705 2 GCAGAGT 13910 0.0 17.898684 9 AGAGTAC 10350 0.0 17.72109 10-11 GTATTAG 1250 0.0 17.304523 1 GAGTACT 4870 0.0 16.15207 12-13 GTGTAGC 2390 0.0 15.982768 1 >>END_MODULE