##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920896_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3369543 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.21705940538524 31.0 28.0 31.0 16.0 34.0 2 28.223459679843824 31.0 28.0 33.0 16.0 34.0 3 28.302891816486685 31.0 28.0 34.0 16.0 34.0 4 31.751487071095397 35.0 32.0 37.0 19.0 37.0 5 31.69411460248467 35.0 32.0 37.0 19.0 37.0 6 31.811148277377676 35.0 32.0 37.0 19.0 37.0 7 31.632338569354953 35.0 32.0 37.0 18.0 37.0 8 31.56566662007281 35.0 32.0 37.0 17.0 37.0 9 32.79263538111845 37.0 32.0 39.0 17.0 39.0 10-11 32.57924234829471 37.0 32.0 39.0 17.0 39.0 12-13 32.39235142569779 37.0 32.0 39.0 16.0 39.0 14-15 33.107451514938376 38.0 32.0 40.0 14.5 41.0 16-17 32.97730879231991 38.0 32.0 40.0 11.5 41.0 18-19 32.83543910850818 38.0 32.0 40.0 10.0 41.0 20-21 32.72800881306456 38.0 31.5 40.0 10.0 41.0 22-23 32.48917152860195 37.5 31.0 40.0 10.0 41.0 24-25 32.278957561900825 37.0 31.0 40.0 9.5 41.0 26-27 32.306259780629006 37.0 31.0 40.0 8.0 41.0 28-29 32.133787875685215 37.0 30.5 40.0 8.0 41.0 30-31 31.874536398556124 37.0 30.0 40.0 4.5 41.0 32-33 31.61639768360279 37.0 30.0 40.0 2.0 41.0 34-35 31.280859155084237 37.0 30.0 40.0 2.0 41.0 36-37 30.96613012506444 36.0 29.5 40.0 2.0 41.0 38-39 30.745891208392354 36.0 29.0 40.0 2.0 41.0 40-41 30.527310083296165 36.0 28.5 39.0 2.0 41.0 42-43 30.278614933835243 36.0 28.0 39.0 2.0 40.0 44-45 29.992216748680754 35.0 27.0 39.0 2.0 40.0 46-47 29.727568397257432 35.0 27.0 39.0 2.0 40.0 48-49 29.41113142049233 35.0 26.0 39.0 2.0 40.0 50-51 28.285535902049624 34.0 24.5 38.0 2.0 39.5 52-53 28.735297783705388 34.5 25.5 38.0 2.0 39.5 54-55 29.359342646762485 35.0 27.0 39.0 2.0 40.0 56-57 29.28902643474204 35.0 26.0 39.0 2.0 40.0 58-59 29.035183851341266 35.0 26.0 39.0 2.0 40.0 60-61 28.69613149320249 34.0 26.0 38.5 2.0 40.0 62-63 28.29095384745053 34.0 25.5 38.0 2.0 40.0 64-65 27.855206625943044 34.0 24.0 37.5 2.0 40.0 66-67 27.456408628707216 34.0 23.0 37.0 2.0 40.0 68-69 27.003661327366945 33.0 22.0 36.5 2.0 39.0 70-71 26.659098726444505 33.0 21.5 36.0 2.0 39.0 72-73 26.19735569482271 32.5 20.0 35.5 2.0 38.5 74-75 25.755616414451456 32.0 18.5 35.0 2.0 37.5 76-77 25.34066444618751 32.0 17.5 35.0 2.0 37.0 78-79 24.88106918356584 32.0 13.0 35.0 2.0 36.5 80-81 24.428466115434645 31.0 7.5 35.0 2.0 36.0 82-83 23.954253737079476 31.0 4.5 34.0 2.0 35.5 84-85 23.54555350681086 31.0 2.0 34.0 2.0 35.0 86-87 23.08304657337805 31.0 2.0 34.0 2.0 35.0 88-89 22.540487834700432 30.0 2.0 34.0 2.0 35.0 90-91 22.022849834532458 30.0 2.0 34.0 2.0 35.0 92-93 21.46949393434065 29.0 2.0 34.0 2.0 35.0 94-95 20.809291052228744 29.0 2.0 34.0 2.0 35.0 96-97 20.149380049460714 29.0 2.0 34.0 2.0 35.0 98 19.73510680825263 27.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 199540.0 3 34278.0 4 25085.0 5 20444.0 6 18872.0 7 19515.0 8 22197.0 9 24968.0 10 27264.0 11 28744.0 12 29535.0 13 28738.0 14 27056.0 15 27984.0 16 29640.0 17 31787.0 18 32966.0 19 33288.0 20 34861.0 21 37153.0 22 40321.0 23 44970.0 24 51389.0 25 57924.0 26 66537.0 27 76877.0 28 87810.0 29 101729.0 30 116996.0 31 136133.0 32 161304.0 33 194173.0 34 238100.0 35 296621.0 36 365055.0 37 379396.0 38 202388.0 39 17905.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.3781387422388 17.23153102692138 12.069305573762676 25.32102465707714 2 16.634389035500448 19.16985534436235 37.97298059483063 26.22277502530657 3 19.69437556286818 23.038992480051387 28.240087434912102 29.026544522168322 4 13.588412900253727 14.771320052193715 35.24369929486244 36.396567752690125 5 15.03054363484542 36.30428400489553 33.54109357463087 15.124078785628182 6 35.10408404614559 33.734522752207305 16.62883933108843 14.532553870558676 7 30.509355987603513 30.641857466520673 20.303566112271852 18.545220433603966 8 27.626420801941336 33.52742352541713 19.58581560620487 19.26034006643666 9 27.469481766518488 15.017852569324683 18.834987415207344 38.67767824894949 10-11 26.388819847204775 24.569210805324463 26.973157335157516 22.068812012313245 12-13 26.890390425372622 21.8513526367814 26.958400303202666 24.29985663464331 14-15 24.003267006396158 23.48478406907012 24.182094650291866 28.32985427424186 16-17 24.474144592262558 26.362049461564247 25.010272772722637 24.153533173450555 18-19 24.508687114830472 25.624969940522313 26.223606294172587 23.642736650474628 20-21 25.153745308785563 25.00607377873981 25.88224235000885 23.95793856246577 22-23 24.81060628565521 24.660944999031567 25.851090881652915 24.677357833660302 24-25 24.565257287979964 25.000683020757297 25.82914265452751 24.604917036735234 26-27 24.32634950617229 25.231960178968926 25.768094765025328 24.67359554983346 28-29 24.38181394361325 25.33344617216533 25.80447405968877 24.480265824532648 30-31 24.544104852766075 25.188759921253528 25.595483064461057 24.671652161519344 32-33 24.318411291839073 25.196731075398898 25.483993100962028 25.000864531800005 34-35 24.811483640573854 25.14131654429457 25.59346695000453 24.453732865127048 36-37 24.864152728908692 24.913154407346703 25.532663907258097 24.690028956486508 38-39 24.699338506693586 25.05102660808926 25.52666362994545 24.722971255271705 40-41 24.77451671288715 25.019466880357495 25.687752730209468 24.51826367654589 42-43 24.684547593959078 24.93387802795112 25.59958387795343 24.781990500136374 44-45 24.476524452252118 25.01272099705797 25.703685326860708 24.807069223829203 46-47 24.631881839821965 24.973135390480007 25.62952287976694 24.76545988993109 48-49 24.56083188484693 25.078175060587625 25.44178276532852 24.919210289236922 50-51 24.362761456409036 25.22108336809487 25.63986055658185 24.77629461891425 52-53 24.55908455532203 24.947933584555994 25.776449597429078 24.716532262692898 54-55 24.230699453305903 24.927300999576783 25.96699323016413 24.875006316953183 56-57 24.122063778455384 25.02233540982478 25.846901365190917 25.008699446528915 58-59 24.160441700883368 24.682662340332833 25.938766363072308 25.218129595711492 60-61 24.048603871886908 24.744860968396456 26.123113217037137 25.0834219426795 62-63 23.921997564193223 24.86279589733137 26.13496407825692 25.080242460218482 64-65 23.932263149248673 24.692460959289857 25.984048904528663 25.391226986932814 66-67 23.949114236067935 24.75473641489184 26.003009453297558 25.293139895742662 68-69 24.18700562058782 24.532737785674964 25.973425071594768 25.30683152214245 70-71 23.87882028668395 24.56404959139308 26.05210417856715 25.505025943355825 72-73 24.017742932114253 24.53237076854317 26.005214637263702 25.44467166207888 74-75 23.986610035832044 24.605302499666458 26.042024034154803 25.366063430346692 76-77 24.02284663986762 24.406383586679453 26.132806107764083 25.43796366568884 78-79 23.999092310638222 24.42370808376591 26.086896962069723 25.490302643526146 80-81 24.053530325630604 24.458066660630294 26.064402351326493 25.42400066241261 82-83 24.027916993599437 24.394056879675684 26.146575385100622 25.431450741624257 84-85 23.97436955130334 24.326618455197792 26.172805383895316 25.52620660960356 86-87 24.01010162974469 24.263878201539455 26.17518325991819 25.55083690879767 88-89 23.988145601449105 24.185147889505924 26.117215244178567 25.709491264866415 90-91 24.022592475380232 24.167291546437813 26.164752313048012 25.645363665133942 92-93 24.194456518841793 23.98684141359946 26.201079890417585 25.617622177141165 94-95 24.063584585473805 23.829878172732467 26.353692979797717 25.75284426199601 96-97 24.288634049896736 23.64142462025833 26.280345527837795 25.789595802007142 98 24.27285555753449 23.51927843397012 26.304523547572572 25.90334246092282 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 31.0 1 35.0 2 80.0 3 122.0 4 134.5 5 161.0 6 246.0 7 466.0 8 715.0 9 822.5 10 830.0 11 910.0 12 1048.0 13 1219.0 14 1390.5 15 1539.5 16 1688.0 17 1787.0 18 1797.5 19 1778.0 20 1798.5 21 1786.0 22 1872.0 23 2090.0 24 2374.0 25 2929.5 26 3812.5 27 4982.0 28 6536.0 29 8877.5 30 12313.0 31 17552.5 32 23312.5 33 29210.0 34 35751.5 35 43226.0 36 51936.0 37 60777.5 38 69322.0 39 77547.0 40 85213.5 41 92405.5 42 101992.5 43 113780.0 44 122663.5 45 130115.0 46 138978.5 47 146285.5 48 151383.0 49 153038.0 50 152476.0 51 152786.0 52 152575.0 53 153646.0 54 151956.5 55 145815.0 56 136649.5 57 124762.5 58 114875.5 59 102602.0 60 88038.5 61 73882.0 62 60174.5 63 46751.5 64 35069.0 65 26885.0 66 20442.0 67 15864.0 68 12381.5 69 9684.0 70 7525.0 71 6050.0 72 5143.0 73 4310.5 74 3527.0 75 2744.0 76 1940.0 77 1167.0 78 658.5 79 383.5 80 215.5 81 126.0 82 88.5 83 60.5 84 35.0 85 18.5 86 9.5 87 12.5 88 12.0 89 5.5 90 4.5 91 6.5 92 4.5 93 1.0 94 0.5 95 1.0 96 3.0 97 3.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3888657898118528 2 0.025315005625391927 3 0.018904640777695967 4 0.016471076344774353 5 0.02243627696693587 6 0.021575626130902616 7 0.015551070278669836 8 0.009467159196365798 9 0.0 10-11 1.483880751781473E-5 12-13 0.005327131898895488 14-15 0.0028935674659738724 16-17 0.005920684199608077 18-19 0.03623636795850357 20-21 0.07748825285802852 22-23 0.09719418924168649 24-25 0.0637771947115677 26-27 0.0735411300582898 28-29 0.056624889487981014 30-31 0.05261841145817103 32-33 0.019809808036282666 34-35 0.3406693429939906 36-37 0.5228305440826841 38-39 0.4791599335577555 40-41 0.4870690179647507 42-43 0.43798224269581953 44-45 0.4116433593516985 46-47 0.4103523830976486 48-49 0.3992677938818409 50-51 0.39598841742040386 52-53 0.4574359193516747 54-55 0.4592165762538124 56-57 0.4286783103821497 58-59 0.41456660443270793 60-61 0.4291531522227198 62-63 0.40883882473083144 64-65 0.45751011338926373 66-67 0.4781063782239906 68-69 0.4214221335059384 70-71 0.3772173259103683 72-73 0.36392175437440627 74-75 0.3458926032402614 76-77 0.3438893642253564 78-79 0.3432512955020903 80-81 0.35966301661679345 82-83 0.3545436280231473 84-85 0.35535976243662715 86-87 0.34043192207370554 88-89 0.38530447600757733 90-91 0.3629720706932661 92-93 0.3527926487360452 94-95 0.359855921114525 96-97 0.35995979276714973 98 0.35485524298102145 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3369543.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.92484481340143 #Duplication Level Percentage of deduplicated Percentage of total 1 74.19536119860537 38.525826161118495 2 12.01593756277323 12.478513864690417 3 5.013186115732136 7.809267332402695 4 2.7499254245754945 5.7115780367803834 5 1.5894981006933608 4.126722110484954 6 1.0364193693363575 3.228954894863625 7 0.715552664799132 2.600847275285754 8 0.505009045672466 2.09780130607254 9 0.36470150686868275 1.7043362232633004 >10 1.706116782134012 15.1060628890264 >50 0.07212909604363359 2.5213417549463415 >100 0.03414750677093045 3.2265502818546223 >500 0.0015549114832297097 0.5515937262956766 >1k 4.6071451202143153E-4 0.31060414291490746 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.7806569021377677E-4 2 0.0 0.0 0.0 0.0 2.374209202850357E-4 3 0.0 0.0 0.0 0.0 2.374209202850357E-4 4 0.0 0.0 0.0 0.0 2.374209202850357E-4 5 0.0 0.0 0.0 0.0 2.967761503562946E-4 6 0.0 0.0 0.0 0.0 3.5613138042755354E-4 7 0.0 0.0 0.0 0.0 3.5613138042755354E-4 8 0.0 0.0 0.0 0.0 3.5613138042755354E-4 9 0.0 0.0 0.0 0.0 3.5613138042755354E-4 10-11 0.0 0.0 0.0 0.0 4.0064780298099774E-4 12-13 0.0 0.0 0.0 0.0 0.00109807175631829 14-15 0.0 0.0 0.0 5.935523007125892E-5 0.0013058150615676964 16-17 0.0 0.0 0.0 8.903284510688838E-5 0.001543235981852732 18-19 0.0 0.0 0.0 1.6322688269596204E-4 0.001647107634477435 20-21 0.0 1.483880751781473E-5 0.0 2.2258211276722094E-4 0.0017954957096555824 22-23 0.0 2.967761503562946E-5 0.0 2.967761503562946E-4 0.001929044977315915 24-25 0.0 2.967761503562946E-5 0.0 6.825851458194777E-4 0.0019587225923515445 26-27 0.0 2.967761503562946E-5 0.0 0.0013948479066745846 0.002092271860011877 28-29 0.0 2.967761503562946E-5 0.0 0.005683263279323042 0.00219614351263658 30-31 0.0 2.967761503562946E-5 0.0 0.02617565646142518 0.00219614351263658 32-33 0.0 2.967761503562946E-5 0.0 0.06864432357741095 0.00219614351263658 34-35 0.0 2.967761503562946E-5 0.0 0.12667889977958435 0.00219614351263658 36-37 0.0 2.967761503562946E-5 0.0 0.22501567720014257 0.00219614351263658 38-39 0.0 2.967761503562946E-5 0.0 0.3889251450419241 0.0022258211276722094 40-41 0.0 2.967761503562946E-5 0.0 0.5781347797015797 0.0023296927802969125 42-43 0.0 2.967761503562946E-5 0.0 0.7729683224104871 0.002507758470510689 44-45 0.0 2.967761503562946E-5 0.0 1.0131492608938362 0.002700662968242281 46-47 0.0 2.967761503562946E-5 0.0 1.2979356547757366 0.0029529226960451314 48-49 0.0 2.967761503562946E-5 0.0 1.6054996181974825 0.0030567943486698346 50-51 0.0 2.967761503562946E-5 0.0 1.9490625286574468 0.003234860038883611 52-53 0.0 2.967761503562946E-5 0.0 2.2980416038614138 0.003368409306543944 54-55 0.0 2.967761503562946E-5 0.0 2.6809867094736584 0.0034426033441330175 56-57 0.0 2.967761503562946E-5 0.0 3.132056780400191 0.0034722809591686467 58-59 0.0 2.967761503562946E-5 0.0 3.6105341288121267 0.0034722809591686467 60-61 0.0 2.967761503562946E-5 0.0 4.12426848388639 0.0034722809591686467 62-63 0.0 2.967761503562946E-5 0.0 4.644576430691046 0.0035613138042755355 64-65 0.0 2.967761503562946E-5 0.0 5.1954523209824 0.003620669034346794 66-67 0.0 2.967761503562946E-5 0.0 5.825389377728671 0.003680024264418053 68-69 0.0 2.967761503562946E-5 0.0 6.516595870715999 0.0037097018794536828 70-71 0.0 2.967761503562946E-5 0.0 7.246368424442128 0.003724540686971497 72-73 0.0 2.967761503562946E-5 0.0 7.990757203573304 0.0038135735320783855 74-75 0.0 2.967761503562946E-5 0.0 8.7420757058153 0.003976800414774348 76-77 0.0 2.967761503562946E-5 0.0 9.549410706437044 0.00408067206739905 78-79 0.0 4.451642255344419E-5 0.0 10.42967844600885 0.004214221335059384 80-81 0.0 5.935523007125892E-5 0.0 11.35330518114771 0.0042884153726484575 82-83 0.0 8.903284510688838E-5 0.0 12.293521703091487 0.004451642255344419 84-85 0.0 8.903284510688838E-5 0.0 13.220427814691785 0.0044813198703800485 86 0.0 8.903284510688838E-5 0.0 13.933224772617534 0.0044813198703800485 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2695 0.0 43.030735 1 GTATCAA 4890 0.0 42.819298 1 TCAACGC 6240 0.0 32.556053 4 ATCAACG 6345 0.0 32.08958 3 CAACGCA 6335 0.0 31.778292 5 AACGCAG 6585 0.0 30.774351 6 TATCAAC 7030 0.0 29.094543 2 GTACATG 11400 0.0 27.93433 1 TACATGG 11610 0.0 26.425663 2 ACATGGG 12030 0.0 25.15886 3 ACGCAGA 8035 0.0 24.590574 7 CGCAGAG 8265 0.0 23.684397 8 CATGGGG 8265 0.0 20.917566 4 GAGTACA 8435 0.0 20.786285 1 AGTACAT 8180 0.0 20.575233 2 GCAGAGT 9885 0.0 19.106098 9 TAAGGCG 895 0.0 18.445572 5 AGAGTAC 8035 0.0 17.543669 10-11 GTATTAA 1575 0.0 17.238855 1 TAAGGTG 1195 0.0 16.501112 5 >>END_MODULE