##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920896_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3369543 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.283506398345413 31.0 30.0 34.0 27.0 34.0 2 30.301074656118054 31.0 30.0 34.0 26.0 34.0 3 30.44056419520392 31.0 30.0 34.0 27.0 34.0 4 34.08380186868071 35.0 35.0 37.0 30.0 37.0 5 33.62043962638257 35.0 35.0 37.0 28.0 37.0 6 33.5636580390872 35.0 35.0 37.0 28.0 37.0 7 33.37461578617634 35.0 35.0 37.0 27.0 37.0 8 33.30295413947826 35.0 33.0 37.0 27.0 37.0 9 34.64524477058165 38.0 35.0 39.0 27.0 39.0 10-11 34.45286601180041 38.0 34.0 39.0 27.0 39.0 12-13 34.27147197706039 37.0 34.0 39.0 27.0 39.0 14-15 35.17297152759291 38.0 34.0 40.0 26.0 41.0 16-17 35.04123452349472 38.0 34.0 40.0 25.5 41.0 18-19 34.94368138349918 38.5 34.0 40.0 25.0 41.0 20-21 34.81745788672232 38.0 34.0 40.0 25.0 41.0 22-23 34.66609537257723 38.0 34.0 40.0 24.5 41.0 24-25 34.478893428574736 38.0 33.0 40.0 24.0 41.0 26-27 34.2981929596981 38.0 33.0 40.0 23.0 41.0 28-29 34.236098485759044 38.0 33.0 40.0 23.5 41.0 30-31 34.221737487843306 38.0 33.0 40.0 23.0 41.0 32-33 34.073930055203334 38.0 33.0 40.0 22.0 41.0 34-35 33.90116270960186 38.0 33.0 40.0 21.5 41.0 36-37 33.70065955531655 38.0 33.0 40.0 19.5 41.0 38-39 33.507727309014896 38.0 32.0 40.0 18.5 41.0 40-41 33.27390568988139 38.0 32.0 40.0 17.0 41.0 42-43 33.28888413057794 38.0 32.0 40.0 17.0 41.0 44-45 33.14096421977699 38.0 32.0 40.0 15.0 41.0 46-47 32.88520045596688 37.5 31.5 40.0 14.5 41.0 48-49 32.61656966538192 37.0 31.0 40.0 11.5 41.0 50-51 32.34883380327837 37.0 31.0 40.0 9.0 41.0 52-53 32.07549109775421 36.5 31.0 40.0 8.0 41.0 54-55 31.775350099405173 36.0 30.0 39.5 7.0 41.0 56-57 31.43525739247132 36.0 30.0 39.0 4.0 41.0 58-59 31.088627152109353 35.0 29.0 39.0 2.0 40.0 60-61 30.739213448233187 35.0 29.0 39.0 2.0 40.0 62-63 30.40524694298307 35.0 28.5 38.5 2.0 40.0 64-65 29.993794262307976 34.5 28.0 38.0 2.0 40.0 66-67 29.54538033792713 34.0 28.0 37.5 2.0 40.0 68-69 29.0866086291227 34.0 27.5 37.0 2.0 39.0 70-71 28.658507103188768 34.0 26.0 36.0 2.0 39.0 72-73 28.218379465702025 33.5 26.0 36.0 2.0 39.0 74-75 27.783249390199206 33.0 26.0 35.0 2.0 38.0 76-77 26.352647970362746 31.5 24.0 34.0 2.0 36.0 78-79 27.197977144081555 33.0 26.0 35.0 2.0 36.5 80-81 27.231120807777195 33.0 26.0 35.0 2.0 36.0 82-83 26.905689881387474 33.0 25.0 35.0 2.0 36.0 84-85 26.59586863856612 33.0 25.0 35.0 2.0 35.5 86-87 26.0691351913301 32.0 23.5 35.0 2.0 35.0 88-89 25.708230908464444 32.0 22.0 35.0 2.0 35.0 90-91 25.33750467051467 32.0 20.0 34.5 2.0 35.0 92-93 25.029519433347488 32.0 19.0 34.0 2.0 35.0 94-95 24.646196680083918 32.0 17.0 34.0 2.0 35.0 96-97 24.102637360615372 31.0 4.5 34.0 2.0 35.0 98-99 23.490376588160473 31.0 2.0 34.0 2.0 35.0 100-101 21.305742054634706 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 76508.0 3 35114.0 4 19472.0 5 13799.0 6 12207.0 7 12020.0 8 13729.0 9 15536.0 10 17734.0 11 19939.0 12 21912.0 13 23708.0 14 25166.0 15 27186.0 16 28399.0 17 29576.0 18 29087.0 19 28090.0 20 28515.0 21 29818.0 22 32283.0 23 36535.0 24 42371.0 25 50141.0 26 58822.0 27 70608.0 28 83252.0 29 96967.0 30 114819.0 31 136143.0 32 164112.0 33 199293.0 34 250843.0 35 325381.0 36 430054.0 37 489719.0 38 263332.0 39 17353.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.181072092945804 18.64509341681455 12.782278399710734 25.391556090528912 2 16.71490762990708 20.271680759082166 37.11601246815963 25.897399142851125 3 19.55099808050596 23.806534471791867 28.60954368755968 28.03292376014249 4 13.9313471041215 15.740069051819733 34.89111515839414 35.437468685664626 5 14.953818300537202 36.609117620870805 33.57810227643724 14.858961802154749 6 35.03147737164689 34.32771523896955 16.345921311027332 14.294886078356225 7 30.394802812577364 30.792247728875576 20.280835713158478 18.53211374538858 8 27.563151509244634 33.83211122498373 19.565431206596383 19.039306059175264 9 27.25770509420986 14.949853212241607 18.782562125489118 39.00987956805941 10-11 26.3654049961925 24.73881540459509 27.000662264838788 21.895117334373627 12-13 26.837265457488535 21.935261416396624 27.017704772104373 24.209768354010468 14-15 23.91725710828922 23.58696238342266 24.186805414319842 28.308975093968275 16-17 24.42539825180957 26.538598088890232 24.98853313349036 24.047470525809842 18-19 24.501912246500922 25.656121156516704 26.216481481288973 23.6254851156934 20-21 25.12042077093341 25.026159389019988 25.815416619721532 24.03800322032507 22-23 24.74155962425306 24.82866184260473 25.87829926569785 24.551479267444353 24-25 24.576757751689666 25.16215903619323 25.78164983447433 24.479433377642774 26-27 24.33690064920853 25.362817020364197 25.774448665723686 24.52583366470359 28-29 24.325820021040776 25.450107720053445 25.815805166020112 24.408267092885666 30-31 24.57784938400422 25.25050593954848 25.639361391858806 24.53228328458849 32-33 24.23240983582954 25.337373928689804 25.536855564400625 24.893360671080032 34-35 24.741128585566486 25.26232956370327 25.614942054479062 24.381599796251187 36-37 24.827897489969807 25.046438475087378 25.551810792546515 24.5738532423963 38-39 24.672786438870585 25.074495755578813 25.621211106907104 24.6315066986435 40-41 24.688898391359672 25.02052340737097 25.815915833769825 24.47466236749953 42-43 24.701267235096307 24.96863782726963 25.635980934410945 24.69411400322311 44-45 24.386519799817698 25.066544124249933 25.77708531021295 24.76985076571941 46-47 24.551263610678415 24.974090095514107 25.692323632296965 24.782322661510513 48-49 24.457446341205706 25.1303850231446 25.496801663989515 24.915366971660177 50-51 24.30413524377584 25.245816485617883 25.674441660093304 24.775606610512973 52-53 24.533062378601265 25.001702865607474 25.784323575035383 24.68091118075588 54-55 24.248422999095464 24.93907556321991 25.839010487120945 24.973490950563683 56-57 24.09684538996231 25.084670860625152 25.67170930000129 25.146774449411247 58-59 24.03453538211689 24.893453282974427 25.78445391394468 25.287557420964003 60-61 23.995636396019325 25.023799452323175 25.879600151390342 25.10096400026716 62-63 23.82387445044243 25.11359192683696 25.836511028252364 25.22602259446825 64-65 23.753948516948462 24.930037458785986 25.704069951559717 25.61194407270584 66-67 23.799425771179273 25.033434332803022 25.704110199917196 25.46302969610051 68-69 24.027813959318713 24.807122269910895 25.657943788093963 25.50711998267643 70-71 23.70296621766432 24.786971748413826 25.687380855271396 25.822681178650452 72-73 23.799078178738668 24.852267951383112 25.57272380561023 25.77593006426799 74-75 23.731270643005058 24.90990556811436 25.454845999970594 25.903977788909987 76-77 23.75479480075125 24.715443405173215 25.641579113747515 25.888182680328022 78-79 23.62690547105276 24.893996941979587 25.576601391672536 25.902496195295114 80-81 23.55224044959929 24.982476022612943 25.48500566421848 25.98027786356929 82-83 23.495293230179307 24.978032204987834 25.48875654043699 26.037918024395868 84-85 23.34748799416341 24.934681926769255 25.45544561655438 26.262384462512955 86-87 23.277667588271168 24.95312999116682 25.460818368728788 26.308384051833222 88-89 23.203247463180695 24.90481794836801 25.36196653927945 26.529968049171842 90-91 23.107784719800318 24.94622875187619 25.345019776630608 26.60096675169289 92-93 23.155786314577654 24.840177603108547 25.32574641984578 26.678289662468025 94-95 22.875602555570147 24.74026952050043 25.485260806305977 26.89886711762345 96-97 23.009597701430863 24.67002661155894 25.395793702767005 26.92458198424319 98-99 22.753665792284952 24.71971136945034 25.363485231991124 27.163137606273587 100-101 22.92651271512911 24.65640481371603 25.385947292255057 27.031135178899806 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 49.0 1 37.0 2 53.5 3 87.5 4 79.0 5 82.0 6 160.5 7 311.5 8 472.0 9 505.5 10 407.5 11 344.5 12 345.0 13 393.5 14 453.5 15 507.5 16 575.5 17 637.0 18 709.0 19 787.0 20 918.0 21 1074.0 22 1295.5 23 1615.5 24 1923.5 25 2389.0 26 3164.0 27 4193.0 28 5311.0 29 7204.0 30 10037.0 31 14082.0 32 19634.5 33 25107.5 34 30375.5 35 36670.5 36 44773.5 37 53398.5 38 61596.5 39 69487.5 40 77282.0 41 85180.0 42 92955.0 43 102797.0 44 114177.5 45 123849.0 46 131123.5 47 138225.5 48 146082.5 49 152148.0 50 153236.5 51 151752.0 52 151119.5 53 152989.5 54 151951.5 55 144305.0 56 135028.5 57 123807.0 58 113829.5 59 102532.5 60 87408.0 61 73441.0 62 60849.0 63 47349.5 64 35167.5 65 27111.5 66 20845.5 67 15675.5 68 12020.0 69 9453.0 70 7597.0 71 6144.0 72 5101.0 73 4502.5 74 3595.0 75 2708.0 76 2013.5 77 1287.0 78 738.5 79 394.0 80 224.0 81 143.5 82 79.5 83 36.0 84 22.5 85 16.0 86 10.0 87 7.5 88 3.5 89 1.0 90 2.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1944180560984086 2 0.0 3 0.01264266400517815 4 0.014215577602066511 5 0.007211660453657959 6 0.10781877542444182 7 0.1424525521710214 8 0.12417114130907367 9 0.14307578208676963 10-11 0.11336848943610453 12-13 0.11480785376533256 14-15 0.11611366882690027 16-17 0.06625527556704276 18-19 0.0798773008683967 20-21 0.037082179987019015 22-23 0.08336442063508315 24-25 0.05753005674656771 26-27 0.06564688445881237 28-29 0.039218968269584334 30-31 0.02405370698637768 32-33 0.0315324659753563 34-35 0.0204478767595487 36-37 0.0248846802073753 38-39 0.0315324659753563 40-41 0.02458790405701901 42-43 0.01295427896305226 44-45 0.027110501335047513 46-47 0.033832481140617585 48-49 0.008636185975368173 50-51 0.015298810550866987 52-53 0.006603269345427555 54-55 0.012182660972125893 56-57 0.005119388593646082 58-59 0.0038284123395962003 60-61 0.022792408347363426 62-63 0.010550392145166274 64-65 0.007122627608551071 66-67 0.04076220425143707 68-69 0.08998252878802852 70-71 0.02199111274140143 72-73 0.045599655502244665 74-75 0.0871483165521259 76-77 0.2516810143096556 78-79 0.07891277837973874 80-81 0.01743559883343231 82-83 0.012063950511983376 84-85 0.013429120803622331 86-87 0.26467980969526134 88-89 0.6220428111467935 90-91 0.26742498908605705 92-93 0.35113070229404997 94-95 0.0012019434089429932 96-97 0.004229060142577198 98-99 0.0033980869215795733 100-101 0.005074872171092638 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3369543.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.70019091927083 #Duplication Level Percentage of deduplicated Percentage of total 1 70.81953796475054 33.781054817331494 2 13.107823104072164 12.50491329200543 3 5.762221595498622 8.245772106732892 4 3.1475500280688626 6.005549490673641 5 1.8655829756276874 4.449433205659103 6 1.2068614849799457 3.454051394799487 7 0.8292669345761079 2.768933377162317 8 0.593091560236887 2.263246452472618 9 0.4369267182097429 1.8757339088701661 >10 2.095415631069736 16.922616590446754 >50 0.09152976763172764 2.93919277991884 >100 0.04137912208222405 3.648772178863429 >500 0.002000436052228536 0.6262909613229439 >1k 8.12677143641912E-4 0.5144394437409798 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0774330524940622E-4 2 0.0 0.0 0.0 0.0 2.0774330524940622E-4 3 0.0 0.0 0.0 0.0 2.0774330524940622E-4 4 0.0 0.0 0.0 0.0 2.0774330524940622E-4 5 0.0 0.0 0.0 0.0 2.0774330524940622E-4 6 0.0 0.0 0.0 0.0 2.374209202850357E-4 7 0.0 0.0 0.0 2.967761503562946E-5 2.374209202850357E-4 8 0.0 0.0 0.0 2.967761503562946E-5 2.374209202850357E-4 9 0.0 0.0 0.0 2.967761503562946E-5 2.374209202850357E-4 10-11 0.0 0.0 0.0 2.967761503562946E-5 2.6709853532066514E-4 12-13 0.0 0.0 0.0 2.967761503562946E-5 7.567791834085512E-4 14-15 0.0 0.0 0.0 8.903284510688838E-5 8.903284510688839E-4 16-17 0.0 0.0 0.0 1.1871046014251785E-4 0.001053555333764846 18-19 0.0 0.0 0.0 1.6322688269596204E-4 0.0011871046014251783 20-21 0.0 0.0 0.0 2.2258211276722094E-4 0.0014393643292280288 22-23 0.0 0.0 0.0 2.967761503562946E-4 0.001528397174334917 24-25 0.0 0.0 0.0 6.825851458194777E-4 0.0015729135968883614 26-27 0.0 0.0 0.0 0.0014096867141923995 0.0016322688269596204 28-29 0.0 0.0 0.0 0.005831651354501189 0.0016322688269596204 30-31 0.0 0.0 0.0 0.02657630426440618 0.0016767852495130646 32-33 0.0 0.0 0.0 0.07012820432919242 0.0017509792871021382 34-35 0.0 0.0 0.0 0.1296318224756295 0.0018993673622802855 36-37 0.0 0.0 0.0 0.22973441799080765 0.0018993673622802855 38-39 0.0 0.0 0.0 0.39716068321431125 0.0019735613998693594 40-41 0.0 0.0 0.0 0.5906290556315797 0.0021219494750475063 42-43 0.0 0.0 0.0 0.7896768196755465 0.0023296927802969125 44-45 0.0 0.0 0.0 1.0333003615030287 0.0024929196629928747 46-47 0.0 0.0 0.0 1.3227609797530406 0.002596791315617578 48-49 0.0 0.0 0.0 1.6321797941145135 0.002700662968242281 50-51 0.0 0.0 0.0 1.9745407611655348 0.0028787286584560576 52-53 0.0 0.0 0.0 2.322525636265808 0.003027116733634205 54-55 0.0 0.0 0.0 2.7046546074645734 0.0031161495787410936 56-57 0.0 0.0 0.0 3.1549085439776254 0.003234860038883611 58-59 0.0 0.0 0.0 3.6325104027460102 0.0033090540764726846 60-61 0.0 0.0 0.0 4.145487978636865 0.0033387316915083143 62-63 0.0 0.0 0.0 4.665513988098683 0.0035316361892399058 64-65 0.0 0.0 0.0 5.217651177029051 0.0035761526117933503 66-67 1.483880751781473E-5 0.0 0.0 5.845303057417579 0.0035909914193111648 68-69 2.967761503562946E-5 0.0 0.0 6.53512954130575 0.003605830226828979 70-71 2.967761503562946E-5 0.0 0.0 7.2642046710785415 0.0036651854569002386 72-73 2.967761503562946E-5 0.0 0.0 8.009246357740501 0.003872928762149645 74-75 2.967761503562946E-5 0.0 0.0 8.766366833721962 0.004080672067399051 76-77 2.967761503562946E-5 0.0 0.0 9.580379297726724 0.004154866104988124 78-79 2.967761503562946E-5 0.0 0.0 10.469431611349076 0.004199382527541569 80-81 2.967761503562946E-5 0.0 0.0 11.398889997842439 0.0042884153726484575 82-83 4.451642255344419E-5 0.0 0.0 12.345323980136179 0.004540675100451307 84-85 5.935523007125892E-5 0.0 0.0 13.282157253965893 0.004540675100451307 86-87 5.935523007125892E-5 0.0 0.0 14.24967718174245 0.004644546753076011 88-89 5.935523007125892E-5 0.0 0.0 15.277917509881904 0.004748418405700713 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4895 0.0 44.490826 1 GGTATCA 2660 0.0 42.90296 1 TCAACGC 6415 0.0 33.74545 4 ATCAACG 6475 0.0 33.432747 3 CAACGCA 6530 0.0 32.927185 5 AACGCAG 6800 0.0 31.899458 6 TATCAAC 6850 0.0 31.738264 2 GTACATG 11510 0.0 26.935804 1 TACATGG 11775 0.0 25.719828 2 ACGCAGA 8485 0.0 25.229038 7 ACATGGG 12220 0.0 24.474644 3 CGCAGAG 8975 0.0 23.796623 8 GAGTACA 8775 0.0 20.971115 1 CATGGGG 7935 0.0 20.819931 4 AGTACAT 8535 0.0 20.021992 2 GCAGAGT 10415 0.0 19.367205 9 TAAGGCG 970 0.0 18.594368 5 GTATACG 205 1.598678E-5 18.526062 4 GGACCGT 470 0.0 18.17819 6 GTATTAA 1740 0.0 18.036505 1 >>END_MODULE