##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920895_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3001686 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.211916902700683 31.0 30.0 34.0 26.0 34.0 2 30.22712602184239 31.0 30.0 34.0 26.0 34.0 3 30.362886724327595 31.0 30.0 34.0 26.0 34.0 4 34.00939338758285 35.0 35.0 37.0 30.0 37.0 5 33.52131268893549 35.0 35.0 37.0 28.0 37.0 6 33.46961907408037 35.0 35.0 37.0 28.0 37.0 7 33.28024416944344 35.0 33.0 37.0 27.0 37.0 8 33.20596491438478 35.0 33.0 37.0 27.0 37.0 9 34.53805128184627 38.0 34.0 39.0 27.0 39.0 10-11 34.33981035991107 37.0 34.0 39.0 27.0 39.0 12-13 34.14979498188685 37.0 34.0 39.0 26.0 39.0 14-15 35.04216147191945 38.0 34.0 40.0 26.0 41.0 16-17 34.91379411437439 38.0 34.0 40.0 25.0 41.0 18-19 34.81379481398121 38.0 33.5 40.0 25.0 41.0 20-21 34.68511230022061 38.0 34.0 40.0 24.5 41.0 22-23 34.533399063059896 38.0 33.5 40.0 24.0 41.0 24-25 34.33668578259018 38.0 33.0 40.0 23.0 41.0 26-27 34.14275094063803 38.0 33.0 40.0 22.5 41.0 28-29 34.079155681173845 38.0 33.0 40.0 22.5 41.0 30-31 34.057544160181976 38.0 33.0 40.0 22.0 41.0 32-33 33.89941402931552 38.0 33.0 40.0 21.0 41.0 34-35 33.722674190438305 38.0 33.0 40.0 19.0 41.0 36-37 33.51017478177265 38.0 32.0 40.0 18.0 41.0 38-39 33.30853676900249 38.0 32.0 40.0 17.0 41.0 40-41 33.06415427862874 38.0 31.5 40.0 15.5 41.0 42-43 33.091998963249324 38.0 32.0 40.0 15.0 41.0 44-45 32.93163891892756 38.0 32.0 40.0 14.5 41.0 46-47 32.66723251532639 37.0 31.0 40.0 10.5 41.0 48-49 32.38455787847229 37.0 31.0 40.0 9.0 41.0 50-51 32.10127491683008 37.0 31.0 40.0 8.0 41.0 52-53 31.816676194645275 36.0 30.0 40.0 7.0 41.0 54-55 31.5044145190403 36.0 30.0 39.0 4.0 41.0 56-57 31.15775234318313 35.5 29.5 39.0 2.0 40.5 58-59 30.794033586457743 35.0 29.0 39.0 2.0 40.0 60-61 30.43023587410542 35.0 28.5 39.0 2.0 40.0 62-63 30.08037349676149 35.0 28.0 38.0 2.0 40.0 64-65 29.6569274734266 34.0 28.0 38.0 2.0 40.0 66-67 29.20094673460182 34.0 27.5 37.0 2.0 39.5 68-69 28.7442553951346 34.0 26.0 36.5 2.0 39.0 70-71 28.309225715148088 34.0 26.0 36.0 2.0 39.0 72-73 27.875110521220407 33.0 26.0 35.5 2.0 38.5 74-75 27.443481096956845 33.0 25.5 35.0 2.0 37.5 76-77 26.03097209368335 30.5 23.5 34.0 2.0 36.0 78-79 26.877726717584718 32.5 25.0 35.0 2.0 36.0 80-81 26.924821250457242 33.0 25.0 35.0 2.0 36.0 82-83 26.605895320163402 33.0 25.0 35.0 2.0 36.0 84-85 26.305006919444605 33.0 24.0 35.0 2.0 35.0 86-87 25.788698751301766 32.0 23.0 35.0 2.0 35.0 88-89 25.431932587219315 32.0 20.5 35.0 2.0 35.0 90-91 25.075802732197836 32.0 19.5 34.0 2.0 35.0 92-93 24.76800987844831 32.0 18.0 34.0 2.0 35.0 94-95 24.38631722305398 31.5 13.0 34.0 2.0 35.0 96-97 23.853952911796902 31.0 2.0 34.0 2.0 35.0 98-99 23.240768687997345 31.0 2.0 34.0 2.0 35.0 100-101 21.027121091280037 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 72201.0 3 32797.0 4 17743.0 5 12853.0 6 11440.0 7 11175.0 8 12715.0 9 14731.0 10 16764.0 11 18465.0 12 20293.0 13 22210.0 14 23630.0 15 25099.0 16 26436.0 17 27712.0 18 26950.0 19 25853.0 20 25899.0 21 27172.0 22 29097.0 23 33112.0 24 38886.0 25 45315.0 26 53485.0 27 63483.0 28 74423.0 29 87892.0 30 103499.0 31 122424.0 32 146792.0 33 179362.0 34 225547.0 35 293628.0 36 385571.0 37 423712.0 38 210519.0 39 12801.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.90148871919948 18.64762572969805 13.383152015183262 25.067733535919217 2 16.664634475424812 20.1104979001801 37.00516976126084 26.21969786313425 3 19.600562685376644 23.64438070956732 28.731405693890892 28.02365091116515 4 14.435812198732606 15.991015830251037 34.30827323950889 35.264898731507465 5 15.266607407249461 36.300713112012296 33.27665041252817 15.156029068210078 6 35.025509200187024 33.85023174719846 16.35410198210721 14.77015707050731 7 30.228472526182067 30.854933757513 20.129395704113332 18.787198012191606 8 27.64517778501957 33.41803336923467 19.573513415972016 19.36327542977374 9 27.228699659282622 15.190730672470618 18.755202253612094 38.82536741463466 10-11 26.491987502317965 24.624155692728852 26.785452233853935 22.098404571099245 12-13 27.115312523346528 21.903332684077398 26.630121562056413 24.351233230519654 14-15 24.030974657780394 23.51025554009287 24.043848802179266 28.41492099994747 16-17 24.48375697974831 26.4253854487874 24.878773231102592 24.2120843403617 18-19 24.586313677454026 25.523292527040642 26.132519652434137 23.757874143071188 20-21 25.210541926754402 24.838081843904032 25.814206539380592 24.137169689960974 22-23 24.945560827668803 24.58383332460884 25.93366806491957 24.536937782802788 24-25 24.756527746411855 24.871428416665765 25.74633352027887 24.625710316643517 26-27 24.396076082162654 25.101483220140828 25.806523661749935 24.69591703594658 28-29 24.493854769084127 25.26417702397686 25.700937927793643 24.541030279145374 30-31 24.725107836703017 25.01956464112442 25.494980838564597 24.760346683607974 32-33 24.48522289748147 25.10050435884076 25.317334171348705 25.096938572329066 34-35 24.904676967962864 25.14768697325757 25.43541375177393 24.512222307005636 36-37 25.135581297628395 24.770399008053072 25.34213138631648 24.751888308002055 38-39 24.819772691561653 24.798527822197606 25.434041012428832 24.947658473811906 40-41 24.96369071906955 24.756789881352752 25.617049508747968 24.662469890829733 42-43 24.963003500985824 24.682274916098788 25.369177830588267 24.985543752327118 44-45 24.527928727988876 24.745680250658346 25.65010967552207 25.076281345830704 46-47 24.87903603408153 24.757480536957036 25.39826713016053 24.965216298800907 48-49 24.647905038519173 24.88512549445222 25.232460221011504 25.234509246017105 50-51 24.44808112458604 25.068197470954225 25.490676930079225 24.993044474380508 52-53 24.900607731290883 24.61686541788731 25.52244867634119 24.960078174480614 54-55 24.320717792871548 24.65137324133133 25.650036658973917 25.3778723068232 56-57 24.369071497595325 24.88738729359196 25.4202955574431 25.323245651369618 58-59 24.273748190950354 24.655764171888368 25.49963752375419 25.57085011340709 60-61 24.03574466241754 24.71546638920429 25.757083246209817 25.491705702168353 62-63 24.09303046179552 24.93057782538547 25.580195126745757 25.39619658607325 64-65 23.903142906309185 24.811513411662638 25.438172284379657 25.847171397648523 66-67 23.941585794115188 24.801641591426502 25.409489675564394 25.847282938893912 68-69 24.162919178121705 24.568853339361993 25.47880407808114 25.789423404435162 70-71 23.83626370147732 24.48863645830036 25.509614151070707 26.165485689151613 72-73 23.867103721689052 24.4767421514239 25.432969435589097 26.223184691297952 74-75 23.803342706524315 24.68972526108591 25.342008661435305 26.16492337095447 76-77 23.794913893138286 24.312962777729258 25.663984439329766 26.228138889802686 78-79 23.665181928616878 24.46110243592285 25.58439993138386 26.28931570407641 80-81 23.72342869595046 24.482260140840637 25.513233318678054 26.281077844530852 82-83 23.63084215218966 24.461889279900202 25.554936571537855 26.35233199637228 84-85 23.334160749805918 24.409341254318946 25.595939772965803 26.66055822290933 86-87 23.36168956275202 24.392030104722533 25.574500904531206 26.67177942799424 88-89 23.175560092936223 24.312691305515262 25.513061655896625 26.998686945651883 90-91 22.988230075370808 24.38758713204789 25.5099821894545 27.114200603126797 92-93 23.12523161772265 24.184609500668547 25.566083325713734 27.12407555589507 94-95 22.82709419088706 24.04495587350243 25.751148241744676 27.376801693865833 96-97 22.924326582612483 23.81374860239156 25.80566546151396 27.456259353481993 98-99 22.673042396515715 23.942952254321128 25.692857554543576 27.691147794619585 100-101 22.80004597639878 23.676929176356136 25.79650779266643 27.726517054578647 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 41.0 1 35.0 2 47.0 3 68.5 4 59.5 5 69.5 6 145.5 7 292.0 8 425.0 9 460.0 10 411.0 11 381.5 12 397.5 13 431.0 14 458.5 15 517.5 16 597.5 17 654.5 18 735.0 19 832.5 20 1005.0 21 1152.5 22 1289.0 23 1538.0 24 1862.0 25 2344.0 26 2977.0 27 3847.5 28 4988.0 29 6510.5 30 8848.5 31 12579.5 32 17654.5 33 21294.5 34 24433.0 35 29366.5 36 35379.5 37 41560.5 38 48352.0 39 55204.5 40 61781.5 41 69091.5 42 77130.5 43 86017.5 44 93934.0 45 102210.0 46 111267.0 47 118931.5 48 126578.5 49 132632.0 50 135389.0 51 137782.0 52 140440.0 53 144265.5 54 145835.0 55 140907.5 56 132003.5 57 120575.0 58 110079.0 59 97761.5 60 82622.0 61 69058.0 62 56672.0 63 43967.0 64 32277.0 65 24280.5 66 18883.0 67 14537.5 68 10859.5 69 8265.5 70 6414.5 71 4978.5 72 3842.0 73 3218.0 74 2536.5 75 1838.5 76 1426.5 77 947.5 78 529.5 79 294.5 80 181.0 81 96.0 82 50.5 83 32.0 84 15.5 85 8.0 86 5.5 87 5.0 88 3.5 89 2.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19172558355537522 2 0.0 3 0.012126518230088024 4 0.013559046482543479 5 0.00646303444131065 6 0.10527416925021471 7 0.14038776874063444 8 0.12176490145871355 9 0.1394882742565345 10-11 0.11227023745988088 12-13 0.11267001278614751 14-15 0.11421914217543074 16-17 0.06449708597101762 18-19 0.07702337952737227 20-21 0.03651281313235295 22-23 0.08218714415831635 24-25 0.0567514390246015 26-27 0.06426388369736208 28-29 0.03959441460565829 30-31 0.024536210649614913 32-33 0.031498964248758865 34-35 0.01915590105027641 36-37 0.02395320496547607 38-39 0.03203199801711438 40-41 0.024369637597003817 42-43 0.01294272618788241 44-45 0.02626857039677035 46-47 0.03328129591169762 48-49 0.00861182681999383 50-51 0.015824439998054426 52-53 0.00649634905183287 54-55 0.012476321640571332 56-57 0.004580758946805229 58-59 0.003664607157444183 60-61 0.022603963239326164 62-63 0.010110984293493724 64-65 0.007079354735971717 66-67 0.03941118424778608 68-69 0.08919986967324364 70-71 0.02135466534474292 72-73 0.04334230828940802 74-75 0.08426930731595511 76-77 0.24887679790624337 78-79 0.07967189106388876 80-81 0.016407445682193274 82-83 0.011726742903821386 84-85 0.012526293556354661 86-87 0.26218598480987015 88-89 0.6184857443450115 90-91 0.2649844120937367 92-93 0.3496868093464806 94-95 0.0010494102314499252 96-97 0.00433089936788858 98-99 0.0031648879996108853 100-101 0.004863933136244098 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3001686.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.86374402108563 #Duplication Level Percentage of deduplicated Percentage of total 1 71.98239865338097 35.89311900475928 2 13.11014780309471 13.074421082642255 3 5.583586899145234 8.352556435753957 4 2.918941933154567 5.821974934689287 5 1.7165292186856578 4.279628678262787 6 1.1055420025823521 3.3075878052794874 7 0.7451756702047685 2.601007420888205 8 0.5270738581206659 2.102550075322791 9 0.3720250489142896 1.6695505627644596 >10 1.817432589289206 15.531850251987454 >50 0.08556148063692794 2.9036867443483207 >100 0.032427300172438306 2.7984562918630576 >500 0.0019482709772436551 0.7103534994973835 >1k 0.0012092716408431815 0.9532572119412176 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.331461052221984E-5 2 0.0 0.0 0.0 0.0 3.331461052221984E-5 3 0.0 0.0 0.0 0.0 3.331461052221984E-5 4 0.0 0.0 0.0 0.0 3.331461052221984E-5 5 0.0 0.0 0.0 0.0 6.662922104443968E-5 6 0.0 0.0 0.0 0.0 1.3325844208887937E-4 7 0.0 0.0 0.0 0.0 1.3325844208887937E-4 8 0.0 0.0 0.0 0.0 1.6657305261109923E-4 9 0.0 0.0 0.0 0.0 1.6657305261109923E-4 10-11 0.0 0.0 0.0 0.0 1.6657305261109923E-4 12-13 0.0 0.0 0.0 0.0 3.8311802100552826E-4 14-15 0.0 0.0 0.0 0.0 4.497472420499679E-4 16-17 0.0 0.0 0.0 0.0 5.330337683555175E-4 18-19 0.0 0.0 0.0 1.665730526110992E-5 5.996629893999572E-4 20-21 0.0 0.0 0.0 6.662922104443968E-5 7.828933472721663E-4 22-23 0.0 0.0 0.0 1.8323035787220913E-4 8.328652630554961E-4 24-25 0.0 0.0 0.0 5.830056841388473E-4 8.328652630554961E-4 26-27 0.0 0.0 0.0 0.0015491293892832226 8.828371788388259E-4 28-29 0.0 0.0 0.0 0.006912781683360618 8.994944840999358E-4 30-31 0.0 0.0 0.0 0.027501210986092484 8.994944840999358E-4 32-33 0.0 0.0 0.0 0.07330880045414477 9.328090946221556E-4 34-35 0.0 0.0 0.0 0.13857212246717343 9.661237051443756E-4 36-37 0.0 0.0 0.0 0.2456119660750658 9.827810104054853E-4 38-39 0.0 0.0 0.0 0.4174154125381535 0.001116039452494365 40-41 0.0 0.0 0.0 0.6139049853982061 0.0011660113682776946 42-43 0.0 0.0 0.0 0.8235371721092746 0.0011660113682776946 44-45 0.0 0.0 0.0 1.0759786333413954 0.0012492978945832442 46-47 0.0 0.0 0.0 1.3820899321248126 0.0013492417261499038 48-49 0.0 0.0 0.0 1.7025764853485674 0.0014325282524554534 50-51 0.0 0.0 0.0 2.0410862428648433 0.0015324720840221128 52-53 0.0 0.0 0.0 2.391272771369157 0.0015991013050665527 54-55 0.0 0.0 0.0 2.7768061016375465 0.0015991013050665527 56-57 0.0 0.0 0.0 3.221606124024965 0.0016324159155887725 58-59 0.0 0.0 0.0 3.695073368766753 0.0016324159155887725 60-61 0.0 0.0 0.0 4.1993566282415955 0.0016324159155887725 62-63 0.0 0.0 0.0 4.72124665937743 0.0017490170524165419 64-65 0.0 0.0 0.0 5.26737306966818 0.001782331662938762 66-67 0.0 0.0 0.0 5.8991846582220795 0.0017989889681998717 68-69 0.0 0.0 0.0 6.596925860999452 0.0017989889681998717 70-71 0.0 0.0 0.0 7.317837375395028 0.0018489608839832015 72-73 0.0 0.0 0.0 8.067599342502847 0.001965562020810971 74-75 0.0 0.0 0.0 8.833835384513904 0.0020821631576387403 76-77 0.0 0.0 0.0 9.670848316579416 0.0020988204628998503 78-79 0.0 0.0 0.0 10.585367690024873 0.00213213507342207 80-81 0.0 0.0 0.0 11.518593217278557 0.00219876429446651 82-83 0.0 0.0 0.0 12.472357201919188 0.002365337347077609 84-85 0.0 0.0 0.0 13.442611918768318 0.002365337347077609 86-87 0.0 0.0 0.0 14.443216245803193 0.0024652811786442684 88-89 0.0 0.0 0.0 15.500288837673228 0.002565225010210928 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2645 0.0 46.39258 1 GTATCAA 4695 0.0 43.256042 1 TCAACGC 5950 0.0 33.90779 4 CAACGCA 6085 0.0 32.917637 5 ATCAACG 6245 0.0 32.382076 3 TATCAAC 6275 0.0 31.997639 2 AACGCAG 6610 0.0 30.806322 6 GTACATG 10220 0.0 26.619484 1 TACATGG 10630 0.0 25.095413 2 ACGCAGA 8050 0.0 24.824326 7 ACATGGG 10720 0.0 24.001148 3 CGCAGAG 8370 0.0 23.759846 8 TAAGGTG 1535 0.0 22.263884 5 CATGGGG 7765 0.0 20.84685 4 GCAGAGT 9485 0.0 20.16614 9 GTAAGGT 1540 0.0 19.111664 4 TAAGGTA 850 0.0 18.988363 4 AGAGTAC 8085 0.0 18.578735 10-11 CTATACT 650 0.0 18.258041 4 AGGTAAG 1460 0.0 18.2065 2 >>END_MODULE