##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920893_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3543826 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.378233581445592 31.0 30.0 34.0 27.0 34.0 2 30.379302200503073 31.0 30.0 34.0 27.0 34.0 3 30.523491277506288 31.0 30.0 34.0 27.0 34.0 4 34.168298895036045 35.0 35.0 37.0 30.0 37.0 5 33.72197986018501 35.0 35.0 37.0 28.0 37.0 6 33.67837529269214 35.0 35.0 37.0 29.0 37.0 7 33.49795249541033 35.0 35.0 37.0 28.0 37.0 8 33.431964774794245 35.0 35.0 37.0 28.0 37.0 9 34.78429556078656 38.0 35.0 39.0 27.0 39.0 10-11 34.59628477809012 38.0 34.5 39.0 27.0 39.0 12-13 34.41778123418023 37.0 34.0 39.0 27.0 39.0 14-15 35.341034097046524 38.5 34.0 40.0 27.0 41.0 16-17 35.220552730297705 38.0 34.0 40.0 26.5 41.0 18-19 35.12192514530905 38.5 34.0 40.0 26.0 41.0 20-21 35.00269412211547 38.0 34.0 40.0 25.0 41.0 22-23 34.8642551863438 38.0 34.0 40.0 25.0 41.0 24-25 34.69310598206572 38.0 34.0 40.0 24.5 41.0 26-27 34.51104992175124 38.0 33.0 40.0 24.0 41.0 28-29 34.458647236066334 38.0 33.5 40.0 24.0 41.0 30-31 34.4517947551601 38.0 33.0 40.0 24.0 41.0 32-33 34.30988781616253 38.0 33.0 40.0 24.0 41.0 34-35 34.14972490184338 38.0 33.0 40.0 23.0 41.0 36-37 33.96325129958412 38.0 33.0 40.0 22.0 41.0 38-39 33.78131403742734 38.0 33.0 40.0 20.5 41.0 40-41 33.54691243305964 38.0 32.5 40.0 19.0 41.0 42-43 33.58055291089348 38.0 33.0 40.0 19.0 41.0 44-45 33.4431768094709 38.0 32.0 40.0 18.0 41.0 46-47 33.20198635598926 38.0 32.0 40.0 15.5 41.0 48-49 32.93848625750813 37.5 32.0 40.0 14.5 41.0 50-51 32.67152055433873 37.0 31.0 40.0 12.5 41.0 52-53 32.40361829277171 37.0 31.0 40.0 9.0 41.0 54-55 32.12702937446703 37.0 31.0 40.0 8.0 41.0 56-57 31.805756264557008 36.0 30.0 39.5 7.5 41.0 58-59 31.470211291412163 36.0 30.0 39.0 6.5 40.5 60-61 31.137057095918365 35.0 29.0 39.0 2.0 40.0 62-63 30.8075104421041 35.0 29.0 39.0 2.0 40.0 64-65 30.395314978782817 35.0 28.5 38.0 2.0 40.0 66-67 29.954179889193206 34.5 28.0 38.0 2.0 40.0 68-69 29.503453753090586 34.0 28.0 37.0 2.0 40.0 70-71 29.05726141746237 34.0 27.5 37.0 2.0 39.0 72-73 28.600680309924922 34.0 26.0 36.0 2.0 39.0 74-75 28.136278699913596 33.5 26.0 36.0 2.0 38.5 76-77 26.710869410631332 31.5 25.0 34.5 2.0 36.0 78-79 27.536880337804398 33.0 26.0 35.0 2.0 37.0 80-81 27.553755037634467 33.0 26.0 35.0 2.0 37.0 82-83 27.19808054910145 33.0 26.0 35.0 2.0 36.0 84-85 26.86073173457162 33.0 25.0 35.0 2.0 36.0 86-87 26.306883012879304 32.5 24.0 35.0 2.0 35.0 88-89 25.91811844035232 32.0 23.5 35.0 2.0 35.0 90-91 25.53740166701187 32.0 21.0 34.5 2.0 35.0 92-93 25.205925460222936 32.0 20.0 34.0 2.0 35.0 94-95 24.80952450825746 32.0 18.5 34.0 2.0 35.0 96-97 24.25469915848013 31.5 6.5 34.0 2.0 35.0 98-99 23.62842123174219 31.0 2.0 34.0 2.0 35.0 100-101 21.40869684346805 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 74520.0 3 34638.0 4 18555.0 5 13407.0 6 11256.0 7 11372.0 8 12905.0 9 14964.0 10 17430.0 11 19282.0 12 22158.0 13 24033.0 14 26364.0 15 28242.0 16 29726.0 17 31194.0 18 30344.0 19 29765.0 20 29756.0 21 30995.0 22 33191.0 23 37630.0 24 43976.0 25 50949.0 26 61002.0 27 72797.0 28 85737.0 29 101124.0 30 119284.0 31 141150.0 32 169720.0 33 207431.0 34 260034.0 35 336414.0 36 448867.0 37 532832.0 38 309193.0 39 21587.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.30877682107991 18.569026001029602 12.989348039158868 25.132849138731622 2 16.458116171617906 19.73468787688786 38.31277269256448 25.494423258929753 3 20.486397245583337 23.051842862787154 28.16108822035333 28.300671671276174 4 13.959268592315935 15.483218042540988 35.17365866681869 35.383854698324384 5 14.618268058820858 36.746046998326264 34.086894781058554 14.548790161794326 6 35.34240987489152 34.360508343578246 16.25277403637547 14.044307745154757 7 30.534949768979697 30.547807779803033 19.802834414254022 19.114408036963248 8 27.132043144913386 35.214114091714585 18.911640853857005 18.74220190951503 9 26.57906018108895 15.846314313464566 18.810027289659516 38.764598215786975 10-11 26.234861791787527 25.38303277629106 26.83152631842873 21.550579113492685 12-13 26.745363234978157 22.129934938877803 27.1140132636602 24.010688562483836 14-15 23.318774714137778 23.951304081522238 24.45500527814101 28.27491592619897 16-17 23.922793899639412 27.120626413623878 25.245508170428334 23.711071516308387 18-19 23.939331552455823 26.345097687033793 26.627310007961135 23.088260752549246 20-21 24.469035579422147 25.540237613935368 26.59695822320534 23.393768583437144 22-23 23.95544363399692 25.499400060467014 26.40900356941781 24.13615273611825 24-25 23.81359769027902 25.68724603664343 26.55697722565534 23.94217904742221 26-27 23.67860359371424 25.975088901146954 26.38356755816536 23.96273994697345 28-29 23.85860284762467 26.036580942081212 26.269065159661935 23.835751050632187 30-31 23.985540748568553 25.86451239965204 26.221138935601747 23.928807916177664 32-33 23.759954847786997 25.86234418061901 26.180633974217564 24.197066997376425 34-35 24.0028415850219 25.940371872824112 26.235537706743795 23.82124883541019 36-37 24.185061522857428 25.679493495747824 26.21221317875788 23.92323180263687 38-39 23.960691058075238 25.818210610151233 26.351370137844377 23.869728193929156 40-41 24.175800447769788 25.706541435640712 26.22634277307917 23.891315343510332 42-43 24.000576854177673 25.665015642654076 26.153210945610468 24.181196557557787 44-45 23.880452305552797 25.859624279239107 26.333477331446353 23.92644608376174 46-47 24.108072235778675 25.775579388377466 26.080864203019622 24.03548417282423 48-49 23.824422880546507 25.883445737867554 26.153487536635478 24.13864384495046 50-51 23.94260740650011 26.003142004462248 26.13952695518375 23.91472363385389 52-53 23.9878473388257 25.798894114605943 26.13399251492697 24.079266031641396 54-55 23.577662539245775 25.74112251737397 26.42723392246093 24.253981020919323 56-57 23.733805805401296 25.875817769965327 26.274363781104746 24.116012643528627 58-59 23.733740667052235 25.628245993483358 26.311727404343856 24.326285935120552 60-61 23.725770064377954 25.605951256328353 26.417992973717347 24.250285705576346 62-63 23.61257801146588 25.71299117997206 26.39572599679495 24.27870481176711 64-65 23.380256252332565 25.58510431901094 26.313901699624182 24.72073772903231 66-67 23.390404674862733 25.709910087935974 26.259883975327114 24.63980126187418 68-69 23.637925285806947 25.54045697195531 26.29202194972498 24.529595792512765 70-71 23.46253027226374 25.369896333769727 26.252087359109876 24.915486034856656 72-73 23.456882309698006 25.436154019014108 26.272495830289095 24.83446784099879 74-75 23.406374431666297 25.599231343537554 26.127146047975785 24.867248176820357 76-77 23.39276266410739 25.302036516347414 26.378400257624683 24.92680056192051 78-79 23.348725940843305 25.423204924165887 26.266967204468926 24.961101930521885 80-81 23.398323698728625 25.39787636519632 26.22922527335677 24.974574662718275 82-83 23.321804922927566 25.522461350898283 26.228022644789494 24.92771108138465 84-85 23.327536101000252 25.382790192635092 26.22564897840537 25.06402472795929 86-87 23.186914366214477 25.41756543828298 26.214765075987668 25.180755119514874 88-89 23.149166321066307 25.41547646919434 26.12633653633049 25.309020673408867 90-91 23.13148591403738 25.407006955232735 26.09370231920788 25.367804811522003 92-93 23.09002715935722 25.32267046670172 26.201537128148246 25.38576524579282 94-95 23.02421546884076 25.198668035634746 26.250296822172093 25.526819673352403 96-97 23.08308031199827 25.020420193903302 26.278352111163738 25.618147382934687 98-99 22.818046982452834 25.152072434902895 26.21674879349472 25.81313178914955 100-101 23.169770865615337 24.92303819715372 26.268815040801258 25.63837589642969 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 69.0 1 41.0 2 34.5 3 67.0 4 60.0 5 52.0 6 105.5 7 228.5 8 357.0 9 408.5 10 365.5 11 316.0 12 332.5 13 361.5 14 438.5 15 538.0 16 592.5 17 638.0 18 711.5 19 846.0 20 999.0 21 1255.0 22 1610.0 23 2012.0 24 2602.5 25 3333.5 26 4516.0 27 6367.5 28 8633.5 29 12018.5 30 16487.5 31 22471.0 32 30523.0 33 36619.0 34 41304.0 35 48057.5 36 56311.5 37 64738.5 38 72705.5 39 80627.0 40 89847.5 41 99666.0 42 108323.5 43 117541.5 44 126799.0 45 134285.5 46 141194.0 47 148941.0 48 156496.5 49 162421.5 50 164009.0 51 161965.5 52 158896.0 53 155856.5 54 151253.5 55 141768.5 56 130425.5 57 118267.5 58 107058.5 59 95331.5 60 79784.5 61 65536.5 62 53346.5 63 40870.5 64 29909.0 65 21618.0 66 15796.5 67 11852.0 68 8954.5 69 6707.5 70 5051.0 71 3874.5 72 2906.5 73 2353.5 74 1829.5 75 1297.5 76 907.0 77 535.0 78 288.5 79 160.0 80 72.5 81 41.0 82 23.5 83 14.5 84 8.0 85 6.5 86 5.0 87 3.0 88 1.0 89 0.0 90 1.0 91 1.0 92 0.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18463096100090692 2 0.0 3 0.01202090621830756 4 0.013177847896595374 5 0.0071391766977272585 6 0.1088653901179121 7 0.14605683236140826 8 0.1269249675350878 9 0.14456127360654838 10-11 0.11706274517992701 12-13 0.11723205371821303 14-15 0.11929197426735962 16-17 0.06761054295555143 18-19 0.08112700792871885 20-21 0.038291947742355295 22-23 0.08613571885301366 24-25 0.05924387935525051 26-27 0.06751177964155125 28-29 0.04049295874007358 30-31 0.025509153101760638 32-33 0.03223916749863001 34-35 0.020683859760609016 36-37 0.0246767194551877 38-39 0.03305749210034578 40-41 0.026355695793190748 42-43 0.013248393120881219 44-45 0.026962384722048992 46-47 0.034778795572920344 48-49 0.008479535959158265 50-51 0.015421186028885165 52-53 0.006772341531440878 54-55 0.012726358461165982 56-57 0.005502527494295713 58-59 0.0036824607077209776 60-61 0.023787849629186085 62-63 0.010059748983161138 64-65 0.007012195294012742 66-67 0.0416499004183614 68-69 0.0925694433078825 70-71 0.021798474304325327 72-73 0.045543996798939904 74-75 0.0875466233387305 76-77 0.23845696713100475 78-79 0.08015348383357422 80-81 0.01717070759117406 82-83 0.011456544424020818 84-85 0.01322017503116688 86-87 0.25792744903389725 88-89 0.6257784665499944 90-91 0.27034340850820554 92-93 0.3564085821369333 94-95 0.001058178364287637 96-97 0.004303258681436391 98-99 0.003386170765720439 100-101 0.005220346597152343 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3543826.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.08261635556774 #Duplication Level Percentage of deduplicated Percentage of total 1 68.40635687104998 31.52343899970651 2 13.550439724456096 12.488794305427103 3 6.248955998207343 8.639047256646384 4 3.4343067000248304 6.330473524184003 5 2.1923688034507687 5.051504523966843 6 1.402078252801963 3.8766860534614547 7 1.002777586565398 3.234743036815875 8 0.702644139448284 2.590374425014664 9 0.5552916273101035 2.3030361924111356 >10 2.390715164943547 18.31724482474162 >50 0.08331777541398877 2.585514758613293 >100 0.028780016158129078 2.2620691111629148 >500 0.0013525463708881226 0.4207765714338014 >1k 6.147937986746483E-4 0.3762964164142914 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.821808971433699E-5 0.0 3 0.0 0.0 0.0 2.821808971433699E-5 0.0 4 0.0 0.0 0.0 8.465426914301097E-5 0.0 5 0.0 0.0 0.0 8.465426914301097E-5 0.0 6 0.0 0.0 0.0 8.465426914301097E-5 0.0 7 0.0 0.0 0.0 8.465426914301097E-5 0.0 8 0.0 0.0 0.0 8.465426914301097E-5 0.0 9 0.0 0.0 0.0 8.465426914301097E-5 0.0 10-11 0.0 0.0 0.0 1.1287235885734796E-4 0.0 12-13 0.0 0.0 0.0 1.4109044857168494E-4 0.0 14-15 0.0 0.0 0.0 1.9752662800035894E-4 4.2327134571505486E-5 16-17 0.0 0.0 0.0 2.1163567285752743E-4 8.465426914301097E-5 18-19 0.0 0.0 0.0 2.680718522862014E-4 8.465426914301097E-5 20-21 0.0 0.0 0.0 3.103989868577069E-4 8.465426914301097E-5 22-23 0.0 0.0 0.0 4.2327134571505486E-4 1.1287235885734796E-4 24-25 0.0 0.0 0.0 7.477793774299303E-4 1.5519949342885346E-4 26-27 0.0 0.0 0.0 0.0010863964540019741 1.6930853828602194E-4 28-29 0.0 0.0 0.0 0.004063404918864527 1.6930853828602194E-4 30-31 0.0 0.0 0.0 0.01686030860431635 1.6930853828602194E-4 32-33 0.0 0.0 0.0 0.04239767979579133 1.6930853828602194E-4 34-35 0.0 0.0 0.0 0.07600542464556669 1.9752662800035894E-4 36-37 0.0 0.0 0.0 0.13718224314624927 2.2574471771469591E-4 38-39 0.0 0.0 0.0 0.2437619679973001 2.2574471771469591E-4 40-41 0.0 0.0 0.0 0.36789334465066853 2.2574471771469591E-4 42-43 0.0 0.0 0.0 0.4998411321549082 2.2574471771469591E-4 44-45 0.0 0.0 0.0 0.6570158918637654 2.2574471771469591E-4 46-47 0.0 0.0 0.0 0.8467402180581101 2.3985376257186443E-4 48-49 0.0 0.0 0.0 1.0540020870099152 2.821808971433699E-4 50-51 0.0 0.0 0.0 1.2882263406837695 2.821808971433699E-4 52-53 0.0 0.0 0.0 1.5286867921844922 2.821808971433699E-4 54-55 0.0 2.821808971433699E-5 0.0 1.7961942826764068 3.103989868577069E-4 56-57 0.0 2.821808971433699E-5 0.0 2.105295237407254 3.103989868577069E-4 58-59 0.0 2.821808971433699E-5 0.0 2.4478205194047336 3.103989868577069E-4 60-61 0.0 2.821808971433699E-5 0.0 2.825900594442278 3.103989868577069E-4 62-63 0.0 2.821808971433699E-5 0.0 3.211782971285836 3.103989868577069E-4 64-65 0.0 2.821808971433699E-5 0.0 3.6115486482688484 3.103989868577069E-4 66-67 0.0 2.821808971433699E-5 0.0 4.065366076099673 3.103989868577069E-4 68-69 0.0 2.821808971433699E-5 0.0 4.575210521058314 3.386170765720439E-4 70-71 0.0 2.821808971433699E-5 0.0 5.128426169907891 3.386170765720439E-4 72-73 0.0 2.821808971433699E-5 0.0 5.697556821356353 3.950532560007179E-4 74-75 0.0 2.821808971433699E-5 0.0 6.273191742483971 3.950532560007179E-4 76-77 0.0 2.821808971433699E-5 0.0 6.890998598689665 3.950532560007179E-4 78-79 0.0 2.821808971433699E-5 0.0 7.5716894678237585 3.950532560007179E-4 80-81 0.0 2.821808971433699E-5 0.0 8.296569865450504 3.950532560007179E-4 82-83 0.0 2.821808971433699E-5 0.0 9.038931369655282 5.079256148580658E-4 84-85 0.0 2.821808971433699E-5 0.0 9.772827446945758 5.079256148580658E-4 86-87 0.0 2.821808971433699E-5 0.0 10.526687822709128 5.079256148580658E-4 88-89 0.0 2.821808971433699E-5 0.0 11.34063862051918 5.079256148580658E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4710 0.0 41.498333 1 GGTATCA 2965 0.0 41.220963 1 ATCAACG 5960 0.0 32.419197 3 TCAACGC 5950 0.0 32.314106 4 CAACGCA 6050 0.0 31.695696 5 TATCAAC 6195 0.0 31.111021 2 AACGCAG 6325 0.0 30.243008 6 GTACATG 10060 0.0 26.42552 1 TACATGG 10450 0.0 24.43968 2 ACATGGG 10285 0.0 23.540731 3 ACGCAGA 8155 0.0 23.048653 7 CGCAGAG 8305 0.0 22.460268 8 CATGGGG 7185 0.0 19.557756 4 GAGTACA 7850 0.0 18.96201 1 GTATAGG 980 0.0 18.440268 1 GCAGAGT 9925 0.0 18.076365 9 GTGTAGC 2220 0.0 17.351688 1 AGTACAT 7540 0.0 16.935986 2 GTATAAT 1080 0.0 16.732836 1 AGAGTAC 8375 0.0 16.603352 10-11 >>END_MODULE