FastQCFastQC Report
Mon 15 Aug 2016
SRR2920892_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920892_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4035923
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA34100.044.4855231
GTATCAA60200.041.3920751
TCAACGC74800.031.7361954
ATCAACG75300.031.7146173
CAACGCA77100.030.7233075
TATCAAC82500.029.4053552
AACGCAG82050.028.8701576
GTACATG130350.027.1786351
TACATGG132650.026.55562
ACATGGG138100.024.8216113
ACGCAGA99750.023.413337
CGCAGAG104600.022.0994438
CATGGGG98600.020.8495854
GTATAGG8650.018.6915451
AGTACAT93500.018.3804652
GCAGAGT119800.018.2653569
GAGTACA102550.018.0383281
GTATAGA10650.016.9674421
AGAGTAC101500.016.7168210-11
GTGGTAT21650.016.4734951
Produced by FastQC (version 0.11.5)