##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920890_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3794107 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.93024788178088 31.0 30.0 33.0 23.0 34.0 2 28.94235033434745 31.0 30.0 34.0 22.0 34.0 3 29.018125740786964 31.0 30.0 34.0 23.0 34.0 4 32.53366866037252 35.0 33.0 37.0 25.0 37.0 5 32.50582890782996 35.0 33.0 37.0 25.0 37.0 6 32.64356013154084 35.0 33.0 37.0 25.0 37.0 7 32.48215060882574 35.0 33.0 37.0 25.0 37.0 8 32.429557205424096 35.0 33.0 37.0 25.0 37.0 9 33.72626022407908 37.0 33.0 39.0 25.0 39.0 10-11 33.53212574131409 37.0 33.0 39.0 23.0 39.0 12-13 33.364298371131866 37.0 33.0 39.0 22.5 39.0 14-15 34.15747315507971 38.0 33.0 40.0 22.0 41.0 16-17 34.05370578636818 38.0 33.0 40.0 20.5 41.0 18-19 33.939308907207945 38.0 33.0 40.0 19.0 41.0 20-21 33.847734789767394 38.0 33.0 40.0 18.0 41.0 22-23 33.62795711876339 38.0 32.0 40.0 18.0 41.0 24-25 33.433743302442444 38.0 32.0 40.0 18.0 41.0 26-27 33.493200771617666 38.0 32.0 40.0 17.5 41.0 28-29 33.34759615371944 38.0 32.0 40.0 16.0 41.0 30-31 33.10973135443993 38.0 32.0 40.0 15.5 41.0 32-33 32.89001338127786 38.0 31.5 40.0 12.5 41.0 34-35 32.563096533650736 37.5 31.0 40.0 9.0 41.0 36-37 32.25737189278004 37.0 30.0 40.0 9.0 41.0 38-39 32.073299197940386 37.0 30.0 40.0 8.0 41.0 40-41 31.88511380938914 37.0 30.0 40.0 7.5 41.0 42-43 31.660273682318394 37.0 30.0 40.0 4.0 41.0 44-45 31.39061984809601 36.5 30.0 40.0 2.0 41.0 46-47 31.14654067478856 36.0 29.5 39.5 2.0 41.0 48-49 30.85897155773414 36.0 29.0 39.0 2.0 40.0 50-51 29.69604033307442 34.5 27.0 38.0 2.0 39.5 52-53 30.159099756543505 35.0 28.5 38.5 2.0 39.5 54-55 30.82244464903072 36.0 29.0 39.0 2.0 40.0 56-57 30.785140745898836 36.0 29.0 39.0 2.0 41.0 58-59 30.554708789182804 35.5 29.0 39.0 2.0 41.0 60-61 30.235893848012193 35.0 28.0 39.0 2.0 40.0 62-63 29.85693036595963 35.0 28.0 39.0 2.0 40.0 64-65 29.438298656310955 34.5 28.0 38.0 2.0 40.0 66-67 29.060886527449014 34.0 26.5 38.0 2.0 40.0 68-69 28.622412467545065 34.0 26.0 37.0 2.0 40.0 70-71 28.28850280184507 34.0 26.0 37.0 2.0 39.0 72-73 27.83189417167202 34.0 26.0 36.0 2.0 39.0 74-75 27.39124713667801 33.0 25.0 36.0 2.0 39.0 76-77 26.977345525574265 33.0 24.5 35.0 2.0 37.5 78-79 26.50891250563044 33.0 23.5 35.0 2.0 37.0 80-81 26.053684042121112 32.0 22.0 35.0 2.0 36.5 82-83 25.58374987842989 32.0 20.0 35.0 2.0 36.0 84-85 25.18056198731348 32.0 18.5 35.0 2.0 35.5 86-87 24.727123273012594 32.0 16.5 34.5 2.0 35.0 88-89 24.198584805331002 31.0 8.5 34.0 2.0 35.0 90-91 23.703753478750073 31.0 2.0 34.0 2.0 35.0 92-93 23.167501997176146 31.0 2.0 34.0 2.0 35.0 94-95 22.535497681008998 30.5 2.0 34.0 2.0 35.0 96-97 21.888504594098162 30.0 2.0 34.0 2.0 35.0 98 21.492540932556725 30.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 164863.0 3 29116.0 4 21891.0 5 18110.0 6 16723.0 7 17053.0 8 19564.0 9 22539.0 10 25133.0 11 27172.0 12 27630.0 13 28340.0 14 26434.0 15 27444.0 16 29696.0 17 31535.0 18 32998.0 19 33327.0 20 34780.0 21 37077.0 22 40583.0 23 45783.0 24 52315.0 25 59614.0 26 69294.0 27 80628.0 28 93965.0 29 108201.0 30 126625.0 31 149166.0 32 178241.0 33 216611.0 34 271728.0 35 345754.0 36 441514.0 37 498525.0 38 310791.0 39 33342.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.23479979704316 17.58550138964063 11.965088883562771 25.21460992975344 2 16.509648596934404 19.842407216714992 38.011580741717935 25.636363444632675 3 19.4563627678723 23.71271562382362 28.519549155219625 28.311372453084456 4 13.168674921115272 14.990576010080375 35.70055173177348 36.14019733703088 5 14.603705450458799 36.885969571955854 33.66266159840159 14.84766337918375 6 34.56147626013607 34.05207287344582 17.015359607472305 14.371091258945798 7 30.289546384360698 31.192665387292013 20.521072776735064 17.99671545161222 8 27.51968491483928 33.51580803043307 20.070731789608644 18.893775265119007 9 27.544188922452634 15.244140452549177 19.145690935969913 38.065979689028275 10-11 26.219562658502426 25.118960830298363 27.135114306242365 21.526362204956847 12-13 26.543704416153137 22.309224422405276 27.372798160416128 23.774273001025463 14-15 23.462814774985635 23.990018397566672 24.695662602333172 27.851504225114525 16-17 24.17873632764777 27.2873620903566 25.199604415428116 23.334297166567517 18-19 23.960692668976055 25.989996515746967 26.87060422853589 23.178706586741093 20-21 24.656761911996686 25.518544939286524 26.35275101521032 23.47194213350647 22-23 24.279160864324993 25.333455744770045 26.232203678912164 24.1551797119928 24-25 24.147149490272323 25.506704611133607 26.367681462696694 23.97846443589737 26-27 23.814258283351005 25.915731641055668 26.2865767776037 23.983433297989627 28-29 23.840126204079244 25.92671560977739 26.466780249283122 23.766377936860252 30-31 23.820928331750896 25.772118772310087 26.267511025747552 24.13944187019146 32-33 23.72140633901228 25.845956903194445 26.222034409009197 24.210602348784075 34-35 24.34967625776104 25.783970789490002 25.878370543891986 23.98798240885697 36-37 24.279121794849722 25.490511857231667 26.0426017491102 24.18776459880841 38-39 24.057430902006384 25.690768127326752 26.256138815263263 23.9956621554036 40-41 23.98785589921858 25.462006856078872 26.482223590572435 24.06791365413011 42-43 24.087350827300348 25.31803593761434 26.15234310127831 24.442270133807 44-45 23.94123308648672 25.56633272365858 26.134315868852674 24.358118321002028 46-47 23.88997828470036 25.603296111011296 26.03756241461855 24.469163189669793 48-49 24.10925376009076 25.573802760856957 26.01899729502055 24.297946184031733 50-51 23.725699379674023 25.725597524251842 26.160057197772147 24.38864589830199 52-53 24.1075550491938 25.387311155535414 26.24141279165802 24.26372100361277 54-55 23.54237413986458 25.286409592353813 26.51894002012613 24.652276247655468 56-57 23.542921517861124 25.69634441428604 26.44308576523225 24.317648302620587 58-59 23.693508127161543 25.151183237298515 26.504856822273815 24.650451813266127 60-61 23.570093660750768 25.31179672399083 26.715675896541285 24.402433718717116 62-63 23.383397939867173 25.337297437316053 26.638000866006696 24.64130375681008 64-65 23.247056550106645 25.041285396345756 26.752817710928767 24.958840342618824 66-67 23.285851793044714 25.48363537004743 26.37153633435943 24.858976502548423 68-69 23.401124655615398 24.939048407611118 26.700574897192357 24.959252039581127 70-71 23.01200489829582 25.03626175225304 26.803475785005602 25.148257564445537 72-73 23.2263663848086 24.954581892900283 26.7188991428415 25.10015257944962 74-75 23.092472889102318 24.970584879299174 26.73766049073637 25.19928174086214 76-77 22.98859495462825 24.84072323491252 26.932902063845038 25.23777974661419 78-79 23.00651097359185 24.883104588752257 26.843007462928302 25.267376974727583 80-81 22.87985585368292 25.08829305731207 26.902776874174528 25.12907421483048 82-83 23.027047225936396 24.810832853781967 26.770774270940876 25.391345649340757 84-85 22.857944543373858 24.541221170251465 26.93148720332911 25.66934708304557 86-87 22.90999654131855 24.464895969842836 27.11883902534991 25.506268463488702 88-89 22.738300674964748 24.372971623863524 27.131490423373027 25.7572372777987 90-91 22.67404302700544 24.46145494674355 27.271414487843487 25.593087538407524 92-93 22.865628870974056 24.09031118003421 27.240457635742597 25.803602313249137 94-95 22.68745180014874 23.950380468071465 27.442522503842763 25.919645227937032 96-97 22.912843951775212 23.74294059494447 27.45949222533182 25.8847232279485 98 22.786263640070853 23.776181980799308 27.266892372561763 26.170662006568072 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 51.0 1 51.5 2 114.5 3 207.5 4 213.0 5 241.5 6 384.0 7 657.5 8 1071.0 9 1304.5 10 1232.5 11 1251.5 12 1432.0 13 1606.0 14 1764.5 15 1912.0 16 2065.5 17 2160.0 18 2188.5 19 2189.0 20 2211.0 21 2278.0 22 2463.5 23 2818.0 24 3385.0 25 4309.0 26 5674.0 27 7695.5 28 10654.0 29 14956.0 30 20657.5 31 27927.0 32 34534.5 33 40396.5 34 47355.0 35 56525.5 36 68125.0 37 80067.5 38 87548.0 39 93563.0 40 103534.5 41 114050.0 42 125961.0 43 135599.5 44 142665.0 45 150866.0 46 158327.5 47 170746.0 48 180748.0 49 180075.5 50 178239.0 51 177045.0 52 176112.5 53 174372.5 54 166641.5 55 155462.5 56 140195.0 57 123553.5 58 110313.5 59 95600.5 60 80183.0 61 65993.5 62 54264.0 63 42756.5 64 31746.5 65 24534.0 66 19194.5 67 14855.5 68 10472.0 69 7312.0 70 5701.5 71 4945.5 72 4306.5 73 3314.0 74 2769.0 75 1997.5 76 1173.5 77 670.0 78 330.5 79 178.0 80 100.5 81 54.0 82 35.0 83 26.0 84 24.0 85 19.5 86 12.5 87 8.0 88 6.5 89 7.0 90 6.5 91 4.5 92 4.5 93 7.0 94 4.5 95 1.5 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3688087868897741 2 0.024063633418878277 3 0.018317880861030013 4 0.015734927876309236 5 0.021876030380798432 6 0.022297736990548763 7 0.015471361245215278 8 0.008934908794085143 9 0.0 10-11 2.63566631093957E-5 12-13 0.005416294268980816 14-15 0.0033472962148932543 16-17 0.00600931918894222 18-19 0.035014826940832196 20-21 0.07636843135947405 22-23 0.09518708881958257 24-25 0.06392808637183928 26-27 0.07292888682369791 28-29 0.05675907400608365 30-31 0.05167223802597027 32-33 0.01950393070095282 34-35 0.32464819784998156 36-37 0.49592697306638955 38-39 0.45112064578041683 40-41 0.46014780289538487 42-43 0.4122841026887223 44-45 0.38927473579421984 46-47 0.38860264088493024 48-49 0.37982587206950147 50-51 0.3753057043462401 52-53 0.4321174916785425 54-55 0.4330795098820355 56-57 0.4047197403763257 58-59 0.39101427555943996 60-61 0.4049174153496462 62-63 0.3871925594085776 64-65 0.43329036318691067 66-67 0.45242530060433195 68-69 0.39755072801057006 70-71 0.35867464992421144 72-73 0.34595755997392796 74-75 0.32849627066395337 76-77 0.3269148708773896 78-79 0.3272047941715929 80-81 0.34129243060356496 82-83 0.337233504484718 84-85 0.3371412561638351 86-87 0.3246877328446457 88-89 0.36465761245004424 90-91 0.34552267503262296 92-93 0.3362846646127798 94-95 0.34197770384440923 96-97 0.3421358438230656 98 0.33696993785362406 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3794107.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.2146169631403 #Duplication Level Percentage of deduplicated Percentage of total 1 72.32090271216353 31.976410118468458 2 12.130172380274322 10.72661850981386 3 5.406669836849602 7.171615076474082 4 2.94182718150898 5.2028704800869665 5 1.8121823511397468 4.006247426150346 6 1.1895580079127903 3.1557511005180143 7 0.8193870662486805 2.5360219695115678 8 0.5723403417251282 2.0244647185543494 9 0.4460098801170158 1.7748140410034985 >10 2.1225651300051243 16.26639949352522 >50 0.13781589525612456 4.2448119165625435 >100 0.09279848124650347 7.94224703302866 >500 0.0060840642795287215 1.8676907476922369 >1k 0.0016866712728467223 1.1040373686101577 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.63566631093957E-5 0.0 0.0 0.0 0.0 3 2.63566631093957E-5 0.0 0.0 0.0 0.0 4 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 5 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 6 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 7 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 8 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 9 2.63566631093957E-5 0.0 0.0 2.63566631093957E-5 0.0 10-11 2.63566631093957E-5 0.0 0.0 7.90699893281871E-5 0.0 12-13 2.63566631093957E-5 0.0 0.0 1.317833155469785E-4 0.0 14-15 1.054266524375828E-4 0.0 0.0 1.7131831021107206E-4 0.0 16-17 1.054266524375828E-4 0.0 0.0 3.821716150862377E-4 0.0 18-19 1.317833155469785E-4 0.0 0.0 4.217066097503312E-4 0.0 20-21 1.581399786563742E-4 0.0 0.0 4.4806327285972696E-4 0.0 22-23 2.108533048751656E-4 0.0 0.0 6.325599146254969E-4 0.0 24-25 2.63566631093957E-4 0.0 0.0 0.0010938015190399217 0.0 26-27 2.63566631093957E-4 0.0 0.0 0.0020031063963140733 0.0 28-29 3.821716150862377E-4 0.0 0.0 0.007801572280381128 0.0 30-31 4.4806327285972696E-4 0.0 0.0 0.032102415667243964 0.0 32-33 4.4806327285972696E-4 0.0 0.0 0.0778839394882643 0.0 34-35 4.4806327285972696E-4 0.0 0.0 0.14479032879146528 0.0 36-37 4.7441993596912264E-4 0.0 0.0 0.2525495459142296 0.0 38-39 5.27133262187914E-4 0.0 0.0 0.4325919116145117 0.0 40-41 5.27133262187914E-4 0.0 0.0 0.6471219709934379 0.0 42-43 5.534899252973098E-4 0.0 0.0 0.8679117378608457 0.0 44-45 5.534899252973098E-4 0.0 0.0 1.1331783737253587 0.0 46-47 5.666682568520076E-4 0.0 0.0 1.4540312120875876 0.0 48-49 5.798465884067055E-4 0.0 0.0 1.802624438372455 0.0 50-51 5.798465884067055E-4 0.0 0.0 2.1905681626796505 0.0 52-53 5.798465884067055E-4 0.0 0.0 2.576060717317672 5.27133262187914E-5 54-55 5.798465884067055E-4 0.0 0.0 3.0023797431121473 5.27133262187914E-5 56-57 5.798465884067055E-4 0.0 0.0 3.501298197441453 5.27133262187914E-5 58-59 5.798465884067055E-4 0.0 0.0 4.043599719248824 5.27133262187914E-5 60-61 5.798465884067055E-4 0.0 0.0 4.628401360320097 5.27133262187914E-5 62-63 5.798465884067055E-4 0.0 0.0 5.209737100192482 5.27133262187914E-5 64-65 5.798465884067055E-4 0.0 0.0 5.817482216500483 6.589165777348925E-5 66-67 5.798465884067055E-4 0.0 0.0 6.51349579756185 7.90699893281871E-5 68-69 5.798465884067055E-4 0.0 0.0 7.276033596311333 7.90699893281871E-5 70-71 5.930249199614033E-4 0.0 0.0 8.100351413389237 7.90699893281871E-5 72-73 6.325599146254969E-4 0.0 0.0 8.91916068787728 7.90699893281871E-5 74-75 6.589165777348925E-4 0.0 0.0 9.739300973852345 7.90699893281871E-5 76-77 6.589165777348925E-4 0.0 0.0 10.625425165921783 7.90699893281871E-5 78-79 6.589165777348925E-4 0.0 0.0 11.58537437136064 7.90699893281871E-5 80-81 6.984515723989862E-4 0.0 0.0 12.607736155042543 7.90699893281871E-5 82-83 7.11629903953684E-4 2.63566631093957E-5 0.0 13.636489429528478 7.90699893281871E-5 84-85 7.11629903953684E-4 2.63566631093957E-5 0.0 14.641548063879062 7.90699893281871E-5 86 7.379865670630797E-4 2.63566631093957E-5 0.0 15.407762617132306 7.90699893281871E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6815 0.0 38.899014 1 GGTATCA 3855 0.0 33.667175 1 TCAACGC 8415 0.0 31.124018 4 CAACGCA 8490 0.0 30.741018 5 ATCAACG 8525 0.0 30.722418 3 AACGCAG 8950 0.0 29.259674 6 TATCAAC 9015 0.0 29.105717 2 GTACATG 14005 0.0 28.655985 1 TACATGG 14465 0.0 27.304405 2 ACATGGG 14885 0.0 26.069649 3 ACGCAGA 10840 0.0 23.901442 7 CATGGGG 8680 0.0 23.356956 4 CGCAGAG 11010 0.0 23.23808 8 CGTATCA 270 6.184564E-11 22.15548 92 GAGTACA 10555 0.0 21.58385 1 AGTACAT 10400 0.0 20.642418 2 GCAGAGT 12280 0.0 19.86426 9 CATGGGA 6790 0.0 18.171724 4 AGAGTAC 10120 0.0 17.693857 10-11 ATGGGGA 5110 0.0 16.965027 5 >>END_MODULE