##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920890_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3794107 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.321654871620648 31.0 30.0 34.0 27.0 34.0 2 30.324966849906975 31.0 30.0 34.0 26.0 34.0 3 30.463311393168407 31.0 30.0 34.0 27.0 34.0 4 34.117083413830976 35.0 35.0 37.0 30.0 37.0 5 33.66524507611409 35.0 35.0 37.0 28.0 37.0 6 33.61719108079978 35.0 35.0 37.0 28.0 37.0 7 33.42706913642657 35.0 35.0 37.0 28.0 37.0 8 33.36292729751691 35.0 35.0 37.0 27.0 37.0 9 34.696895211442374 38.0 35.0 39.0 27.0 39.0 10-11 34.50795509984299 37.5 34.0 39.0 27.0 39.0 12-13 34.32383983899241 37.0 34.0 39.0 27.0 39.0 14-15 35.241507290121234 38.0 34.0 40.0 27.0 41.0 16-17 35.12051926843392 38.0 34.0 40.0 26.0 41.0 18-19 35.015645578788366 38.5 34.0 40.0 25.5 41.0 20-21 34.902436726217786 38.0 34.0 40.0 25.0 41.0 22-23 34.75884536203117 38.0 34.0 40.0 25.0 41.0 24-25 34.57880233741431 38.0 33.5 40.0 24.0 41.0 26-27 34.40689614183258 38.0 33.0 40.0 24.0 41.0 28-29 34.35150656004166 38.0 33.0 40.0 23.5 41.0 30-31 34.341651144788486 38.0 33.0 40.0 24.0 41.0 32-33 34.20916911410248 38.0 33.0 40.0 23.0 41.0 34-35 34.038423929530715 38.0 33.0 40.0 22.5 41.0 36-37 33.84698494270194 38.0 33.0 40.0 21.5 41.0 38-39 33.67550308939627 38.0 33.0 40.0 19.5 41.0 40-41 33.44959762600264 38.0 32.0 40.0 18.5 41.0 42-43 33.48028890592701 38.0 32.0 40.0 18.5 41.0 44-45 33.34233747229585 38.0 32.0 40.0 17.5 41.0 46-47 33.10513923302638 38.0 32.0 40.0 15.0 41.0 48-49 32.84693394255881 37.0 31.5 40.0 14.5 41.0 50-51 32.592582128021164 37.0 31.0 40.0 12.0 41.0 52-53 32.332867918590594 37.0 31.0 40.0 9.0 41.0 54-55 32.05281374510524 36.5 31.0 40.0 8.0 41.0 56-57 31.738821941500333 36.0 30.0 39.0 7.5 41.0 58-59 31.413266942656072 36.0 30.0 39.0 6.5 40.5 60-61 31.08470425320108 35.0 29.0 39.0 2.0 40.0 62-63 30.7767453579986 35.0 29.0 39.0 2.0 40.0 64-65 30.376066621210207 35.0 29.0 38.0 2.0 40.0 66-67 29.947265720234036 34.5 28.0 38.0 2.0 40.0 68-69 29.512571732953234 34.0 28.0 37.0 2.0 39.5 70-71 29.092461414504125 34.0 27.5 37.0 2.0 39.0 72-73 28.651854441638044 34.0 26.5 36.0 2.0 39.0 74-75 28.207492566762085 33.5 26.0 36.0 2.0 38.5 76-77 26.757786878440697 31.5 25.0 34.5 2.0 36.0 78-79 27.609008127604202 33.0 26.0 35.0 2.0 37.0 80-81 27.64122756685565 33.0 26.0 35.0 2.0 37.0 82-83 27.303586193009316 33.0 26.0 35.0 2.0 36.0 84-85 26.98551806788791 33.0 25.5 35.0 2.0 36.0 86-87 26.446079538610796 33.0 24.5 35.0 2.0 35.0 88-89 26.08714079492223 32.0 23.5 35.0 2.0 35.0 90-91 25.731932968680113 32.0 22.5 35.0 2.0 35.0 92-93 25.43093684495456 32.0 20.0 34.0 2.0 35.0 94-95 25.053613669830607 32.0 19.0 34.0 2.0 35.0 96-97 24.52942062519586 32.0 14.0 34.0 2.0 35.0 98-99 23.927075725592346 32.0 2.0 34.0 2.0 35.0 100-101 21.716946965386057 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 82392.0 3 38127.0 4 20505.0 5 14857.0 6 12800.0 7 12616.0 8 14072.0 9 16170.0 10 18413.0 11 20931.0 12 23547.0 13 25229.0 14 27378.0 15 29330.0 16 30907.0 17 32369.0 18 31289.0 19 30045.0 20 30667.0 21 32294.0 22 35023.0 23 39718.0 24 46474.0 25 54633.0 26 66003.0 27 77649.0 28 91707.0 29 108406.0 30 127825.0 31 151313.0 32 181644.0 33 221973.0 34 280601.0 35 363431.0 36 482273.0 37 567285.0 38 330166.0 39 24043.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.26658429652617 18.91477383903917 12.653622116461943 25.16501974797272 2 16.603248142448276 20.91145558098388 36.953412225854464 25.531884050713384 3 19.292646711107444 24.514565474055022 28.873097056855073 27.319690757982457 4 13.586558396455079 15.923075605065906 35.309594197588304 35.18077180089072 5 14.542047107943404 37.22328827783986 33.68086160723699 14.553803006979734 6 34.505013362899085 34.580027129495186 16.74743685373846 14.167522653867273 7 30.073528266691934 31.420169555544238 20.531851910898215 17.974450266865613 8 27.410040521514933 33.96774376574316 19.920619526593647 18.701596186148265 9 27.333202591020537 15.282861345665694 19.129720745505686 38.25421531780808 10-11 26.244705073972618 25.317009493858773 27.10368832679414 21.33459710537447 12-13 26.510641211687343 22.433417635877657 27.42504829178171 23.63089286065329 14-15 23.41562259746658 24.09503117661285 24.657594251876738 27.831751974043833 16-17 24.140780835715603 27.425727663572157 25.224294635997442 23.2091968647148 18-19 23.96933696185176 26.099376984758166 26.858936466372768 23.07234958701731 20-21 24.68823225573063 25.524205126393255 26.3433296059454 23.444233011930717 22-23 24.25289562176318 25.46788618127453 26.239480433490886 24.039737763471408 24-25 24.122225036719964 25.66676455141118 26.394847719775537 23.816162692093318 26-27 23.803792369553804 26.01537715138818 26.316970081638452 23.863860397419568 28-29 23.81700026446649 25.94915915213573 26.521704050134197 23.712136533263582 30-31 23.836534129360366 25.87086108166492 26.25217792712219 24.040426861852524 32-33 23.775573036525085 25.88715744591883 26.26068562821482 24.076583889341272 34-35 24.288649499070477 25.87569081455221 25.934082504426172 23.901577181951144 36-37 24.263197473899 25.584338806508228 26.104902262537085 24.047561457055693 38-39 24.01520328701477 25.73499867118884 26.36949281598286 23.88030522581353 40-41 23.945077043779765 25.502917350352 26.525136772217838 24.026868833650393 42-43 24.067843343380023 25.43545456031202 26.217530370711685 24.279171725596278 44-45 23.863296480740146 25.639397171352236 26.171932104333557 24.325374243574064 46-47 23.82230750713791 25.671361643460717 26.114822991175068 24.39150785822631 48-49 23.98702720028341 25.69234305379537 26.06769389084882 24.2529358550724 50-51 23.71143450672138 25.72807836921306 26.175550717201297 24.384936406864266 52-53 24.075269483253752 25.452635657586587 26.189910736761085 24.282184122398576 54-55 23.53847181882416 25.376851074844865 26.428426731526088 24.656250374804888 56-57 23.495141613380518 25.75037820545515 26.30375284980232 24.450727331362014 58-59 23.61566786861831 25.229848376442764 26.426550457654034 24.72793329728489 60-61 23.525300717266123 25.477216271916557 26.461129026836684 24.53635398398064 62-63 23.27404475671387 25.575603973132 26.35649719636268 24.793854073791444 64-65 23.08873575749301 25.233187403676016 26.461561210985078 25.216515627845897 66-67 23.189822958856162 25.70830893783092 26.081897959320894 25.01997014399202 68-69 23.30583598912945 25.188779057504885 26.381001889274508 25.12438306409116 70-71 22.924832987238197 25.261416723763357 26.398469079341247 25.415281209657202 72-73 23.171577749129906 25.226498513214164 26.25746590096163 25.3444578366943 74-75 23.08889950235842 25.257608558448585 26.143204545871225 25.510287393321775 76-77 22.960055322951696 25.165694750197982 26.41125375573226 25.462996171118064 78-79 22.9453847496074 25.256798467656704 26.268468961093035 25.529347821642855 80-81 22.829960754851275 25.490841151059225 26.26290624989703 25.41629184419247 82-83 22.943240594444102 25.293489509608396 26.05101614218663 25.712253753760876 84-85 22.712249845595498 24.983491964244056 26.168591000596532 26.135667189563915 86-87 22.763918382274444 24.976944070675604 26.298240403184124 25.96089714386583 88-89 22.538852339627187 25.005052302603488 26.249669147112975 26.206426210656353 90-91 22.44167037525251 25.101387099195243 26.29448585258186 26.16245667297038 92-93 22.550461909005236 24.771425994446037 26.27426024069999 26.403851855848735 94-95 22.308856376883657 24.652722821500973 26.460605503114547 26.577815298500823 96-97 22.520806179319944 24.501304051587464 26.446548381697678 26.531341387394914 98-99 22.304206010846144 24.50543295620029 26.392978340658544 26.79738269229502 100-101 22.295845829197333 24.39009025488663 26.632743108582623 26.681320807333414 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 58.0 1 50.0 2 93.0 3 156.5 4 143.5 5 155.0 6 276.5 7 521.0 8 770.0 9 800.5 10 661.0 11 610.5 12 623.5 13 646.5 14 732.0 15 790.5 16 855.5 17 966.0 18 1048.5 19 1162.0 20 1314.5 21 1505.0 22 1803.5 23 2235.5 24 2748.5 25 3427.0 26 4554.0 27 6253.0 28 8541.5 29 11943.5 30 16696.0 31 22658.5 32 30192.0 33 36358.5 34 41329.0 35 47969.0 36 57681.0 37 69167.0 38 80009.5 39 87314.5 40 92848.0 41 103198.0 42 115736.5 43 126545.0 44 134118.0 45 141714.5 46 149764.5 47 157118.5 48 170476.5 49 179458.5 50 178540.5 51 176625.0 52 173724.5 53 171528.0 54 167543.0 55 156418.5 56 140352.0 57 124182.0 58 110549.0 59 97086.0 60 82190.5 61 66883.5 62 54035.5 63 42892.5 64 33052.5 65 25186.5 66 18786.0 67 15165.0 68 11113.5 69 7245.5 70 5616.0 71 4683.5 72 4045.0 73 3460.0 74 2684.0 75 2074.5 76 1328.0 77 668.5 78 329.5 79 160.0 80 77.0 81 42.0 82 23.0 83 17.0 84 11.5 85 6.0 86 3.5 87 2.5 88 2.0 89 2.0 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18808114794864772 2 0.0 3 0.011702358420571692 4 0.013494611512010599 5 0.007037229050208652 6 0.10901115862046062 7 0.1448562204492388 8 0.12551042972694235 9 0.14453994049192603 10-11 0.11581117770268473 12-13 0.11553443274003607 14-15 0.11827552570341322 16-17 0.06731491758139661 18-19 0.0798079758952502 20-21 0.03848072813971772 22-23 0.08577776008952832 24-25 0.0588412503917259 26-27 0.06780251584892044 28-29 0.04127453442931367 30-31 0.02466983667039438 32-33 0.03216830732501746 34-35 0.02000470730003134 36-37 0.02397138509799539 38-39 0.03276133224497886 40-41 0.024748906659722566 42-43 0.012782981608056916 44-45 0.026949688029357103 46-47 0.035054361935496284 48-49 0.008513202184334812 50-51 0.015194616282566622 52-53 0.00716901236575563 54-55 0.012295383340533095 56-57 0.005363580942762025 58-59 0.0036503978406513047 60-61 0.0233124685202605 62-63 0.009870570334468691 64-65 0.0071162990395368395 66-67 0.04139313941330595 68-69 0.09220878588822087 70-71 0.021981457033236014 72-73 0.044753613959753906 74-75 0.0876754398334048 76-77 0.23877818943957035 78-79 0.08040100081521159 80-81 0.01698686937400553 82-83 0.011728715083681087 84-85 0.01317833155469785 86-87 0.25911235502846913 88-89 0.6206730595631594 90-91 0.2660705140893496 92-93 0.3527575790561521 94-95 0.0014627948025714614 96-97 0.004269779423722104 98-99 0.003479079530440233 100-101 0.004875982675238205 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3794107.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.86374256759247 #Duplication Level Percentage of deduplicated Percentage of total 1 70.30218000562688 29.4311236569611 2 12.73317600425502 10.661168046199556 3 5.858867445286696 7.358223554013911 4 3.2459009253467417 5.435422429545047 5 1.9939911883545147 4.173796689566059 6 1.2553251937463 3.1531566449764945 7 0.8993714209226509 2.635573754670899 8 0.6281474897186601 2.103728384324914 9 0.47330561476755606 1.783290997118255 >10 2.3415887413023313 17.052358415504802 >50 0.15479492642459072 4.504016846037504 >100 0.10472826035749032 8.56881811063402 >500 0.006974310505871632 2.092209231928787 >1k 0.0016484733846138723 1.0471132385186415 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.63566631093957E-5 2 2.63566631093957E-5 0.0 0.0 0.0 2.63566631093957E-5 3 2.63566631093957E-5 0.0 0.0 0.0 2.63566631093957E-5 4 2.63566631093957E-5 0.0 0.0 5.27133262187914E-5 2.63566631093957E-5 5 2.63566631093957E-5 0.0 0.0 5.27133262187914E-5 2.63566631093957E-5 6 5.27133262187914E-5 0.0 0.0 5.27133262187914E-5 2.63566631093957E-5 7 7.90699893281871E-5 0.0 0.0 5.27133262187914E-5 2.63566631093957E-5 8 7.90699893281871E-5 0.0 0.0 5.27133262187914E-5 2.63566631093957E-5 9 7.90699893281871E-5 0.0 0.0 1.054266524375828E-4 2.63566631093957E-5 10-11 7.90699893281871E-5 0.0 0.0 1.581399786563742E-4 2.63566631093957E-5 12-13 1.054266524375828E-4 0.0 0.0 2.2403163642986348E-4 2.63566631093957E-5 14-15 1.054266524375828E-4 0.0 0.0 2.63566631093957E-4 2.63566631093957E-5 16-17 1.054266524375828E-4 0.0 0.0 4.612416044144248E-4 2.63566631093957E-5 18-19 1.317833155469785E-4 0.0 0.0 5.007765990785183E-4 2.63566631093957E-5 20-21 1.7131831021107206E-4 0.0 0.0 5.798465884067055E-4 2.63566631093957E-5 22-23 1.8449664176576992E-4 0.0 0.0 7.511648986177775E-4 2.63566631093957E-5 24-25 2.63566631093957E-4 0.0 0.0 0.001133336513704015 2.63566631093957E-5 26-27 2.63566631093957E-4 0.0 0.0 0.002029463059423469 2.63566631093957E-5 28-29 3.689932835315398E-4 0.0 0.0 0.00809149557458448 2.63566631093957E-5 30-31 3.9534994664093553E-4 0.0 0.0 0.032669083924095975 2.63566631093957E-5 32-33 3.9534994664093553E-4 0.0 0.0 0.07837153775578812 2.63566631093957E-5 34-35 4.348849413050291E-4 0.0 0.0 0.14500118209634044 2.63566631093957E-5 36-37 5.534899252973098E-4 0.0 0.0 0.25318210582885514 2.63566631093957E-5 38-39 6.062032515161012E-4 0.0 0.0 0.43321129319758245 2.63566631093957E-5 40-41 6.062032515161012E-4 0.0 0.0 0.6492963956999631 2.63566631093957E-5 42-43 7.379865670630797E-4 0.0 0.0 0.8717729890063723 2.63566631093957E-5 44-45 7.906998932818711E-4 0.0 0.0 1.1367101665820178 2.63566631093957E-5 46-47 8.565915510553603E-4 0.0 0.0 1.4570490500136133 2.63566631093957E-5 48-49 8.961265457194539E-4 0.0 0.0 1.8030066099875413 2.63566631093957E-5 50-51 8.961265457194539E-4 1.317833155469785E-5 0.0 2.1855867533519744 2.63566631093957E-5 52-53 8.961265457194539E-4 2.63566631093957E-5 0.0 2.5657552620418977 2.63566631093957E-5 54-55 8.961265457194539E-4 2.63566631093957E-5 0.0 2.987119235171807 2.63566631093957E-5 56-57 8.961265457194539E-4 2.63566631093957E-5 0.0 3.480357828601038 2.63566631093957E-5 58-59 8.961265457194539E-4 2.63566631093957E-5 0.0 4.017427552781195 2.63566631093957E-5 60-61 9.093048772741518E-4 2.63566631093957E-5 0.0 4.595824524716884 2.63566631093957E-5 62-63 9.224832088288496E-4 2.63566631093957E-5 0.0 5.172323816908696 5.27133262187914E-5 64-65 9.224832088288496E-4 2.63566631093957E-5 0.0 5.774428607311286 5.27133262187914E-5 66-67 0.0010015531981570366 2.63566631093957E-5 0.0 6.462100304498529 5.27133262187914E-5 68-69 0.0010279098612664323 2.63566631093957E-5 0.0 7.214912494560643 5.27133262187914E-5 70-71 0.00104108819282113 2.63566631093957E-5 0.0 8.028924856362776 5.27133262187914E-5 72-73 0.001067444855930526 2.63566631093957E-5 0.0 8.836611619018651 5.27133262187914E-5 74-75 0.0010806231874852237 2.63566631093957E-5 0.0 9.652996080500628 5.27133262187914E-5 76-77 0.0010806231874852237 2.63566631093957E-5 0.0 10.534099328247727 5.27133262187914E-5 78-79 0.0010806231874852237 2.63566631093957E-5 0.0 11.485693471480904 5.27133262187914E-5 80-81 0.001238763166141598 2.63566631093957E-5 0.0 12.500451357855749 5.27133262187914E-5 82-83 0.001238763166141598 2.63566631093957E-5 0.0 13.521508486713739 5.27133262187914E-5 84-85 0.0012782981608056914 2.63566631093957E-5 0.0 14.521836100036188 5.27133262187914E-5 86-87 0.001317833155469785 2.63566631093957E-5 0.0 15.550668444511448 5.27133262187914E-5 88-89 0.001317833155469785 2.63566631093957E-5 0.0 16.651111842654938 5.27133262187914E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6870 0.0 40.287872 1 GGTATCA 3790 0.0 39.400208 1 TCAACGC 8455 0.0 31.667671 4 ATCAACG 8695 0.0 30.902775 3 CAACGCA 8680 0.0 30.732944 5 AACGCAG 9045 0.0 29.650188 6 TATCAAC 9225 0.0 29.48484 2 GTACATG 14545 0.0 28.183935 1 TACATGG 15020 0.0 26.673685 2 ACATGGG 15685 0.0 25.181955 3 ACGCAGA 11135 0.0 23.61542 7 CGCAGAG 11460 0.0 22.777018 8 AGTACAT 10805 0.0 21.570848 2 GAGTACA 11470 0.0 21.352655 1 CATGGGG 9535 0.0 20.911213 4 GCAGAGT 12800 0.0 19.131918 9 AGAGTAC 10865 0.0 17.863499 10-11 CATGGGA 6695 0.0 17.798105 4 GTATATA 1115 0.0 17.48707 1 GCACCGT 1035 0.0 17.427328 6 >>END_MODULE