##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920889_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3552774 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.9046528149553 31.0 30.0 33.0 23.0 34.0 2 28.928045521612127 31.0 30.0 34.0 22.0 34.0 3 29.001981268721288 31.0 30.0 34.0 23.0 34.0 4 32.51938260075085 35.0 33.0 37.0 25.0 37.0 5 32.489790512990695 35.0 33.0 37.0 25.0 37.0 6 32.61632431446526 35.0 33.0 37.0 25.0 37.0 7 32.46251295466585 35.0 33.0 37.0 25.0 37.0 8 32.40471839751135 35.0 33.0 37.0 25.0 37.0 9 33.69334497494071 37.0 33.0 39.0 25.0 39.0 10-11 33.50431423445454 37.0 33.0 39.0 23.0 39.0 12-13 33.349933319710175 37.0 33.0 39.0 22.0 39.0 14-15 34.132440172102136 38.0 33.0 40.0 21.5 41.0 16-17 34.02781305537589 38.0 33.0 40.0 20.0 41.0 18-19 33.919140789704045 38.0 33.0 40.0 19.0 41.0 20-21 33.82660141061604 38.0 33.0 40.0 18.0 41.0 22-23 33.60839009179869 38.0 32.0 40.0 18.0 41.0 24-25 33.40952267158001 38.0 32.0 40.0 17.5 41.0 26-27 33.43916148339298 38.0 32.0 40.0 17.0 41.0 28-29 33.27767147586647 38.0 32.0 40.0 16.0 41.0 30-31 33.029909163937816 38.0 32.0 40.0 14.5 41.0 32-33 32.78177812605024 38.0 31.0 40.0 11.0 41.0 34-35 32.453079903196766 37.0 31.0 40.0 9.0 41.0 36-37 32.14042435572879 37.0 30.0 40.0 8.0 41.0 38-39 31.929970777764076 37.0 30.0 40.0 8.0 41.0 40-41 31.72356628932772 37.0 30.0 40.0 4.5 41.0 42-43 31.47831623964823 37.0 30.0 40.0 2.0 41.0 44-45 31.193456859344277 36.0 30.0 40.0 2.0 41.0 46-47 30.914441363284013 36.0 29.0 39.0 2.0 40.5 48-49 30.601952727643244 36.0 28.5 39.0 2.0 40.0 50-51 29.434010015835515 34.0 27.0 38.0 2.0 39.5 52-53 29.87642445030278 34.5 28.0 38.5 2.0 39.5 54-55 30.52569344405245 36.0 29.0 39.0 2.0 40.0 56-57 30.474457001768194 35.5 28.5 39.0 2.0 41.0 58-59 30.22471806537652 35.0 28.0 39.0 2.0 40.5 60-61 29.897600016212685 35.0 28.0 39.0 2.0 40.0 62-63 29.505283054874866 35.0 28.0 38.5 2.0 40.0 64-65 29.08287552205685 34.0 26.5 38.0 2.0 40.0 66-67 28.698154174737823 34.0 26.0 37.5 2.0 40.0 68-69 28.257071797980956 34.0 26.0 37.0 2.0 39.5 70-71 27.9321041811272 34.0 26.0 36.5 2.0 39.0 72-73 27.480974303459774 33.5 25.0 36.0 2.0 39.0 74-75 27.055685219493277 33.0 24.5 35.5 2.0 38.5 76-77 26.6476221116232 33.0 23.5 35.0 2.0 37.5 78-79 26.20196894032663 32.5 22.5 35.0 2.0 37.0 80-81 25.77328082225326 32.0 20.5 35.0 2.0 36.0 82-83 25.305943609134722 32.0 19.5 35.0 2.0 36.0 84-85 24.921071534524852 32.0 17.5 35.0 2.0 35.5 86-87 24.47296042472727 31.5 12.5 34.0 2.0 35.0 88-89 23.9467292318622 31.0 4.5 34.0 2.0 35.0 90-91 23.452162310352417 31.0 2.0 34.0 2.0 35.0 92-93 22.922418650890826 31.0 2.0 34.0 2.0 35.0 94-95 22.29599785970062 30.0 2.0 34.0 2.0 35.0 96-97 21.658979293363437 30.0 2.0 34.0 2.0 35.0 98 21.266592527416606 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 157170.0 3 27668.0 4 20690.0 5 17259.0 6 16154.0 7 16779.0 8 19182.0 9 22310.0 10 24205.0 11 26446.0 12 27486.0 13 27688.0 14 25827.0 15 27203.0 16 29882.0 17 32033.0 18 32812.0 19 31945.0 20 32982.0 21 35196.0 22 38585.0 23 42859.0 24 49198.0 25 56316.0 26 65788.0 27 76259.0 28 88122.0 29 102759.0 30 119483.0 31 141027.0 32 169241.0 33 205174.0 34 256452.0 35 327451.0 36 413611.0 37 449840.0 38 270190.0 39 29502.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.03481537498033 17.820319387879916 12.632151954302294 24.512713282837456 2 16.199816439374317 19.602585614702868 38.80415319992343 25.393444745999393 3 19.275640453575615 24.059867161430702 28.89772364814248 27.766768736851205 4 13.216020746468615 15.392434982190007 36.110301757858956 35.28124251348242 5 14.455055692630284 37.11704630298007 33.72745915254409 14.700438851845554 6 33.8098604456314 34.62324487204068 17.17721735306447 14.389677329263456 7 29.68041388605972 31.640646772975796 20.70153777205751 17.977401568906973 8 27.41112978974712 33.66928605449032 19.930645711564075 18.98893844419848 9 27.539072285487343 15.236375857287854 19.26548100160607 37.959070855618734 10-11 26.037946420717905 25.023921458522885 27.277344665328272 21.660787455430935 12-13 26.470705796351236 22.564661851597577 27.315242905401316 23.649389446649874 14-15 23.703093311640696 24.12400268530807 24.694264728028116 27.478639275023113 16-17 23.755397485770903 27.136686577079196 25.537581138215042 23.57033479893486 18-19 23.882857977912543 26.137415043370186 27.03080767153651 22.94891930718076 20-21 24.63700839767097 25.4900988718508 26.479479323555534 23.39341340692269 22-23 24.276630352331086 25.20539064968426 26.57223878238064 23.945740215604015 24-25 23.951045479796967 25.646992058479555 26.57455657673224 23.827405884991236 26-27 23.68407488162258 25.7509019667932 26.530864882571798 24.034158269012423 28-29 23.871834222759368 25.846947191059805 26.524186713426833 23.75703187275399 30-31 23.910085369476786 25.737862341542677 26.405428276544722 23.94662401243581 32-33 23.6110061276999 25.829212939718033 26.175186651121145 24.384594281460924 34-35 24.253533257091224 25.775029296737117 26.220452652237142 23.750984793934514 36-37 24.285639733284945 25.42394622818147 26.25879200941001 24.03162202912357 38-39 24.06848460867624 25.527935884174653 26.1956229326066 24.207956574542507 40-41 24.04295209101758 25.549247064581813 26.45097687985734 23.95682396454326 42-43 24.162303901674147 25.455688024337274 26.175629035157232 24.20637903883134 44-45 23.964223098451466 25.525047645553812 26.298424341403525 24.212304914591197 46-47 24.143207446597348 25.512637343153706 26.165770059026492 24.178385151222454 48-49 23.91129121116628 25.66256271341207 25.915252771990733 24.510893303430922 50-51 23.737994343199656 25.9024698461013 26.17177738881723 24.187758421881814 52-53 24.094418543250782 25.439557845753143 26.21877499053734 24.247248620458738 54-55 23.781036964503176 25.447003524467178 26.43453559463087 24.33742391639878 56-57 23.652559868840395 25.679243099545733 26.307798629934325 24.36039840167954 58-59 23.608084178260842 25.235860585618614 26.38024605961864 24.7758091765019 60-61 23.409947891512385 25.29855911087473 26.72978333958349 24.561709658029397 62-63 23.325887764369853 25.315240567788322 26.702995542971564 24.655876124870257 64-65 23.36140078907741 25.262165979891726 26.573342164306418 24.80309106672445 66-67 23.357391612281667 25.390147721272672 26.507680813481304 24.744779852964356 68-69 23.585974656745933 25.069224446013692 26.469862675766798 24.87493822147358 70-71 23.17103742134301 25.057406979790514 26.713583694002686 25.05797190486379 72-73 23.210605588610505 25.011671298941433 26.668783928317747 25.108939184130307 74-75 23.220092859870824 25.163683700388905 26.638852473945374 24.977370965794897 76-77 23.1944385812554 24.912728686139104 26.776441566799104 25.11639116580639 78-79 23.14794551879833 24.886266891247967 26.79476083644768 25.171026753506027 80-81 23.100220342075282 24.87771325480999 26.852192321748003 25.16987408136672 82-83 23.10892937325791 24.767269790257583 26.85681486355588 25.26698597292863 84-85 22.818806161256425 24.848638715673484 26.952517501258814 25.380037621811276 86-87 23.022747850169118 24.6326026588455 26.951239157311758 25.393410333673632 88-89 22.901603802233033 24.59580087711245 26.81941511712488 25.683180203529638 90-91 22.78653704912653 24.57859966230075 27.01177400275 25.62308928582272 92-93 22.930311248972068 24.427506461290992 27.051276330890396 25.590905958846548 94-95 22.702371970540046 24.072697295540973 27.41415997658206 25.810770757336925 96-97 22.96571161243578 23.73442240854526 27.383970040076385 25.91589593894258 98 22.9253709931623 23.758557714926674 27.30109799121912 26.014973300691903 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 252.0 1 180.0 2 198.0 3 293.0 4 256.0 5 278.0 6 459.5 7 830.5 8 1255.0 9 1415.0 10 1321.5 11 1268.5 12 1366.0 13 1557.0 14 1776.5 15 1923.5 16 2032.5 17 2125.0 18 2195.0 19 2260.5 20 2345.0 21 2444.5 22 2669.5 23 3083.5 24 3666.5 25 4656.0 26 6127.5 27 8325.5 28 11762.5 29 16201.5 30 21790.0 31 29808.5 32 36554.0 33 42304.0 34 50047.5 35 58250.0 36 68105.5 37 78095.0 38 85212.0 39 90701.0 40 96895.0 41 103861.5 42 112391.0 43 121241.5 44 129414.5 45 137729.0 46 145198.5 47 151211.5 48 155209.0 49 156323.0 50 155986.0 51 155889.5 52 155330.0 53 155503.5 54 151700.0 55 143076.5 56 132621.5 57 120268.5 58 110080.5 59 97704.5 60 82194.0 61 67540.0 62 54800.5 63 42094.0 64 30704.5 65 23469.5 66 18104.5 67 14079.5 68 10581.5 69 8046.0 70 5996.0 71 4397.5 72 3719.0 73 3123.5 74 2381.0 75 1735.5 76 1186.5 77 729.5 78 395.0 79 191.5 80 100.5 81 63.5 82 54.0 83 48.0 84 30.0 85 21.5 86 19.0 87 16.0 88 11.0 89 5.5 90 3.0 91 5.0 92 4.5 93 3.0 94 3.5 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3607040582936038 2 0.02291167408903578 3 0.01809853370915234 4 0.015621595969797121 5 0.02189838137748137 6 0.023221291306455182 7 0.013848333724576908 8 0.008162635731966064 9 0.0 10-11 4.222052964810033E-5 12-13 0.004982022498475839 14-15 0.003068025154428624 16-17 0.0054605218344876425 18-19 0.03535265682534267 20-21 0.07382963284464478 22-23 0.09168891688579121 24-25 0.05999537262995056 26-27 0.06972016795889635 28-29 0.053155646826958315 30-31 0.048947667372030976 32-33 0.017605960863257837 34-35 0.3215515537999321 36-37 0.48949074723019254 38-39 0.446482101028661 40-41 0.45548914735358903 42-43 0.40807549255877235 44-45 0.38333426218498556 46-47 0.3828135423193257 48-49 0.3732294820892069 50-51 0.36986591322724155 52-53 0.4274124951376024 54-55 0.4283413467898605 56-57 0.3992514018623194 58-59 0.3859800820429332 60-61 0.3995469455698561 62-63 0.3808995449752785 64-65 0.42853837592821836 66-67 0.44687615930537655 68-69 0.39189095619366726 70-71 0.3513170272018429 72-73 0.3388056769161224 74-75 0.32134045115169163 76-77 0.3201864233413102 78-79 0.32000346771283505 80-81 0.33539988752450905 82-83 0.3311215405201682 84-85 0.33053045310509477 86-87 0.31734357434500476 88-89 0.3588463549890874 90-91 0.33915751466318994 92-93 0.328926072978467 94-95 0.3349354616983799 96-97 0.3352450789157993 98 0.328503867681986 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3552774.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.17323325467045 #Duplication Level Percentage of deduplicated Percentage of total 1 70.6507059939198 27.67616585506964 2 10.655795898273725 8.348439564744746 3 5.188901053906085 6.097980939602054 4 3.111008402155243 4.8747303117946785 5 2.16767991032905 4.24575153743915 6 1.5249686687096553 3.5842772019256555 7 1.1189787241574416 3.0683810197903103 8 0.8579340265408266 2.6886439791041945 9 0.6699456858868152 2.3619544759083957 >10 3.8146381089577663 26.134599518425034 >50 0.16410061825385286 4.341601115578446 >100 0.07098790613464837 4.929539796071674 >500 0.0029759185645003945 0.7960458848450366 >1k 0.0013790842105596678 0.8518887997009172 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.444105929620065E-5 2 0.0 0.0 0.0 0.0 8.444105929620065E-5 3 0.0 0.0 0.0 0.0 8.444105929620065E-5 4 0.0 0.0 0.0 0.0 8.444105929620065E-5 5 0.0 0.0 0.0 0.0 1.1258807906160088E-4 6 0.0 0.0 0.0 0.0 1.688821185924013E-4 7 0.0 0.0 0.0 0.0 1.688821185924013E-4 8 0.0 0.0 0.0 0.0 1.688821185924013E-4 9 0.0 0.0 0.0 0.0 1.688821185924013E-4 10-11 0.0 0.0 0.0 2.814701976540022E-5 2.3924966800590187E-4 12-13 0.0 0.0 0.0 2.814701976540022E-5 8.725576127274068E-4 14-15 0.0 0.0 0.0 2.814701976540022E-5 0.001027366221437108 16-17 0.0 0.0 0.0 9.851456917890077E-5 0.0011118072807333088 18-19 0.0 0.0 0.0 1.5480860870970123E-4 0.0011821748301468092 20-21 0.0 0.0 0.0 2.53323177888602E-4 0.0012666158894430097 22-23 1.407350988270011E-5 0.0 0.0 5.910874150734046E-4 0.00129476290920841 24-25 2.814701976540022E-5 0.0 0.0 0.0014495715179181114 0.00129476290920841 26-27 2.814701976540022E-5 0.0 0.0 0.0027302609172438212 0.0014073509882700109 28-29 2.814701976540022E-5 0.0 0.0 0.009161854933637772 0.0014636450278008115 30-31 2.814701976540022E-5 0.0 0.0 0.03339643895164736 0.0014917920475662119 32-33 2.814701976540022E-5 0.0 0.0 0.07931830169889782 0.0015762331068624124 34-35 2.814701976540022E-5 2.814701976540022E-5 0.0 0.1409321279653589 0.0017169682056894133 36-37 2.814701976540022E-5 2.814701976540022E-5 0.0 0.2431621037532925 0.0017169682056894133 38-39 2.814701976540022E-5 2.814701976540022E-5 0.0 0.4123960600927613 0.001801409264985614 40-41 2.814701976540022E-5 2.814701976540022E-5 0.0 0.6057379388612955 0.001801409264985614 42-43 2.814701976540022E-5 2.814701976540022E-5 0.0 0.8037944434405341 0.0018436297946337144 44-45 2.814701976540022E-5 2.814701976540022E-5 0.0 1.040046453841421 0.0019562178736953154 46-47 2.814701976540022E-5 2.814701976540022E-5 0.0 1.3317199461603806 0.002082879462639616 48-49 2.814701976540022E-5 2.814701976540022E-5 0.0 1.6455451430347103 0.002153247012053117 50-51 2.814701976540022E-5 2.814701976540022E-5 0.0 1.9937378510425936 0.0022658350911147177 52-53 2.814701976540022E-5 2.814701976540022E-5 0.0 2.337159639200242 0.002420643699824419 54-55 2.814701976540022E-5 2.814701976540022E-5 0.0 2.719579123242852 0.00253323177888602 56-57 2.814701976540022E-5 2.814701976540022E-5 0.0 3.172394303718728 0.00258952581841682 58-59 2.814701976540022E-5 2.814701976540022E-5 0.0 3.657634850964345 0.0026176728381822204 60-61 2.814701976540022E-5 2.814701976540022E-5 0.0 4.177017733185393 0.0026458198579476207 62-63 2.814701976540022E-5 2.814701976540022E-5 0.0 4.6972309524895195 0.0027584079370092216 64-65 2.814701976540022E-5 2.814701976540022E-5 0.0 5.2444090167289 0.0027584079370092216 66-67 2.814701976540022E-5 2.814701976540022E-5 0.0 5.871609058161313 0.0027724814468919217 68-69 2.814701976540022E-5 2.814701976540022E-5 0.0 6.575650463553268 0.002786554956774622 70-71 5.629403953080044E-5 2.814701976540022E-5 0.0 7.32292569130488 0.0028006284666573216 72-73 5.629403953080044E-5 2.814701976540022E-5 0.0 8.080488654780742 0.0029835840951324233 74-75 5.629403953080044E-5 2.814701976540022E-5 0.0 8.838206426865316 0.003208760253255625 76-77 5.629403953080044E-5 2.814701976540022E-5 0.0 9.65835428878955 0.0032369072730210253 78-79 5.629403953080044E-5 2.814701976540022E-5 0.0 10.567179336484674 0.0032369072730210253 80-81 5.629403953080044E-5 2.814701976540022E-5 0.0 11.526120152872094 0.003265054292786425 82-83 5.629403953080044E-5 2.814701976540022E-5 0.0 12.480346343448808 0.0034339364113788267 84-85 5.629403953080044E-5 2.814701976540022E-5 0.0 13.439610850563533 0.0035043039607923275 86 5.629403953080044E-5 2.814701976540022E-5 0.0 14.16884383864552 0.0035183774706750276 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3935 0.0 44.44364 1 GTATCAA 7605 0.0 42.361332 1 TCAACGC 9350 0.0 34.144184 4 ATCAACG 9510 0.0 33.473263 3 CAACGCA 9655 0.0 32.828033 5 AACGCAG 10025 0.0 31.657724 6 TATCAAC 10310 0.0 31.099682 2 GTACATG 14850 0.0 28.233372 1 TACATGG 15160 0.0 27.111044 2 ACGCAGA 11690 0.0 26.675316 7 CGCAGAG 12070 0.0 25.491404 8 ACATGGG 15940 0.0 25.46678 3 CATGGGG 10390 0.0 22.691683 4 GCAGAGT 13150 0.0 22.17705 9 GTATTAG 970 0.0 19.452835 1 GAGTACA 11130 0.0 18.690205 1 AGAGTAC 11695 0.0 18.427782 10-11 GGACCGT 450 0.0 18.34501 6 GTATATG 1015 0.0 17.683546 1 CAGAGTA 12495 0.0 17.633259 10-11 >>END_MODULE