##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920886_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4847211 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.452868876556025 31.0 28.0 33.0 20.0 34.0 2 28.4814160142812 31.0 28.0 33.0 16.0 34.0 3 28.5532633095609 31.0 28.0 34.0 18.0 34.0 4 32.01200814241427 35.0 32.0 37.0 22.0 37.0 5 31.970749777552495 35.0 32.0 37.0 22.0 37.0 6 32.09434951356564 35.0 32.0 37.0 22.0 37.0 7 31.92743971739625 35.0 32.0 37.0 20.0 37.0 8 31.864703228310052 35.0 32.0 37.0 19.0 37.0 9 33.11258989963507 37.0 32.0 39.0 19.0 39.0 10-11 32.916966684553245 37.0 32.0 39.0 18.0 39.0 12-13 32.739966137228194 37.0 32.0 39.0 17.0 39.0 14-15 33.47833207590922 38.0 32.0 40.0 17.0 41.0 16-17 33.35730526275832 38.0 32.0 40.0 17.0 41.0 18-19 33.23977953507698 38.0 32.0 40.0 16.5 41.0 20-21 33.14746057062504 38.0 32.0 40.0 15.5 41.0 22-23 32.9169314065346 38.0 32.0 40.0 11.0 41.0 24-25 32.71687553935655 38.0 31.0 40.0 10.0 41.0 26-27 32.751577350356726 38.0 31.5 40.0 10.0 41.0 28-29 32.588433843709296 38.0 31.0 40.0 9.5 41.0 30-31 32.34023235217117 37.0 31.0 40.0 8.5 41.0 32-33 32.08993780134597 37.0 30.0 40.0 8.0 41.0 34-35 31.757553261040215 37.0 30.0 40.0 5.0 41.0 36-37 31.44932921220058 37.0 30.0 40.0 2.0 41.0 38-39 31.24899225554654 37.0 30.0 40.0 2.0 41.0 40-41 31.051432256611072 36.0 29.5 40.0 2.0 41.0 42-43 30.81839329874437 36.0 29.0 39.5 2.0 41.0 44-45 30.533788502295444 36.0 28.0 39.0 2.0 40.0 46-47 30.281599975738626 36.0 28.0 39.0 2.0 40.0 48-49 29.97676447342606 35.0 27.0 39.0 2.0 40.0 50-51 28.859033369911067 34.0 25.5 38.0 2.0 39.5 52-53 29.320617980112686 34.5 27.0 38.5 2.0 39.5 54-55 29.96787998294277 35.0 28.0 39.0 2.0 40.0 56-57 29.916796689890333 35.0 28.0 39.0 2.0 40.0 58-59 29.66909713647704 35.0 27.5 39.0 2.0 40.0 60-61 29.34116742596928 35.0 27.0 39.0 2.0 40.0 62-63 28.947361998477064 34.5 26.0 38.5 2.0 40.0 64-65 28.519602509566845 34.0 26.0 38.0 2.0 40.0 66-67 28.13378187993054 34.0 25.5 37.5 2.0 40.0 68-69 27.683928655055453 34.0 24.5 37.0 2.0 39.5 70-71 27.351293042535183 33.5 24.0 36.5 2.0 39.0 72-73 26.887072896145845 33.0 22.5 36.0 2.0 39.0 74-75 26.445607587538483 33.0 22.0 35.5 2.0 38.5 76-77 26.023147950439956 32.5 20.5 35.0 2.0 37.0 78-79 25.558830634771212 32.0 19.0 35.0 2.0 37.0 80-81 25.105767316504274 32.0 17.5 35.0 2.0 36.0 82-83 24.629289915376077 31.5 11.5 35.0 2.0 36.0 84-85 24.222500320287274 31.0 7.0 34.0 2.0 35.0 86-87 23.754505941664185 31.0 2.0 34.0 2.0 35.0 88-89 23.214062891010933 31.0 2.0 34.0 2.0 35.0 90-91 22.707142519688126 30.0 2.0 34.0 2.0 35.0 92-93 22.161094287003394 30.0 2.0 34.0 2.0 35.0 94-95 21.515525525915834 29.5 2.0 34.0 2.0 35.0 96-97 20.861745548110036 29.0 2.0 34.0 2.0 35.0 98 20.45802565640324 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 258410.0 3 44343.0 4 32902.0 5 26720.0 6 24479.0 7 24925.0 8 28928.0 9 33284.0 10 35850.0 11 38116.0 12 39579.0 13 39434.0 14 37275.0 15 39024.0 16 42048.0 17 44719.0 18 46436.0 19 45941.0 20 48144.0 21 50154.0 22 55046.0 23 61985.0 24 70552.0 25 80647.0 26 92630.0 27 107089.0 28 123506.0 29 142177.0 30 165442.0 31 193622.0 32 229281.0 33 276563.0 34 340556.0 35 428447.0 36 539352.0 37 585390.0 38 341316.0 39 32898.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.23126706764015 17.795369323747636 12.979669807823498 24.99369380078872 2 16.075183113617626 19.362158960882454 39.22497464421945 25.33768328128047 3 19.60476497338887 23.22331288672696 28.74364899600333 28.428273143880844 4 13.49845814500762 15.324480778138982 36.082398711630304 35.094662365223094 5 14.77456121145814 36.45298606495455 33.89587189935386 14.876580824233454 6 34.01811360935024 34.430488147120975 17.108116250660327 14.443281992868462 7 29.85750238266349 31.108000941716924 20.514325177495277 18.520171498124306 8 26.960189108594456 34.10748959248682 19.813817084022887 19.11850421489583 9 27.0089335908835 15.696283904290528 19.265800477841793 38.028982026984174 10-11 25.792386647363458 25.10786880899982 27.418972676535923 21.680771867100802 12-13 26.465299294692223 22.428100323460345 27.271133959787598 23.835466422059838 14-15 23.644277561293883 23.981638268736315 24.84065782449589 27.53342634547391 16-17 23.80010986375347 26.89994919446142 25.562561733887296 23.73737920789781 18-19 23.70872981926794 26.278686164754127 26.934055938247 23.078528077730937 20-21 24.56761317932785 25.598249517287623 26.592919860661706 23.24121744272281 22-23 24.216738105472402 25.34386496862822 26.464249432032844 23.975147493866533 24-25 23.887918749701957 25.490788471649907 26.588599764703112 24.032693013945025 26-27 23.78136002584025 25.801765688438977 26.463276899145292 23.953597386575478 28-29 23.832181020043937 25.94184942876995 26.36322783683954 23.86274171434658 30-31 24.103231181132205 25.667311839187533 26.23106203295602 23.998394946724243 32-33 23.844028799305356 25.747044918233314 26.15944813161907 24.249478150842265 34-35 24.21257566685418 25.757051501330785 26.166538754729423 23.863834077085617 36-37 24.270125424129866 25.46662191418078 26.144068372176022 24.119184289513328 38-39 24.039214930303363 25.647570981789 26.170710331950346 24.142503755957296 40-41 24.217684268526614 25.491562224712354 26.29480746150728 23.995946045253753 42-43 24.041726296430667 25.39849810693845 26.227371682998335 24.33240391363255 44-45 24.03466641698881 25.49489865882391 26.24875868814725 24.221676236040032 46-47 24.009229443199807 25.501484331686168 26.12483838997629 24.364447835137735 48-49 23.878694422495187 25.5468092223473 26.139698077176003 24.434798277981507 50-51 23.883495366820195 25.668637316687764 26.1950679451228 24.252799371369235 52-53 23.936123639473706 25.48238383904951 26.31952956287732 24.261962958599465 54-55 23.660069156250227 25.416921831884203 26.4775801736885 24.44542883817707 56-57 23.626411647332276 25.51694018234747 26.415407650621468 24.441240519698784 58-59 23.58636900250217 25.301564462426946 26.47230636558866 24.639760169482223 60-61 23.526434470722197 25.24432700578943 26.67661198227868 24.552626541209698 62-63 23.466773026511007 25.26821354507532 26.69326905619344 24.571744372220238 64-65 23.40181058640137 25.163996835079715 26.56180899482281 24.8723835836961 66-67 23.341311197756482 25.220595223375884 26.556121441661908 24.881972137205725 68-69 23.50759436700833 24.99425379329918 26.554187065829932 24.943964773862554 70-71 23.310583339226444 24.933271527290206 26.64348146248394 25.112663670999407 72-73 23.291848979213654 24.918181286437708 26.678506521841534 25.11146321250711 74-75 23.32226428749461 25.061845473056284 26.617898276565917 24.99799196288319 76-77 23.291856934162116 24.849136739838272 26.74660540845124 25.11240091754837 78-79 23.2673529673569 24.862287894376212 26.7505635794176 25.119795558849283 80-81 23.293442425922592 24.85441663184067 26.74391292109911 25.10822802113763 82-83 23.293439629130987 24.750945567329012 26.81675320263121 25.13886160090879 84-85 23.284401663969366 24.738428744360665 26.799105284177237 25.178064307492726 86-87 23.25220366040921 24.669187008598527 26.93243350102032 25.146175829971934 88-89 23.262280512556124 24.519368614650684 26.889150123576798 25.32920074921639 90-91 23.27084197540092 24.52303292393528 26.946345454882376 25.25977964578143 92-93 23.368063092620318 24.309278800851832 27.031389694481422 25.291268412046424 94-95 23.30204105801597 24.213386650699615 27.0659961829801 25.418576108304315 96-97 23.464781176820367 24.004788052684315 27.08983768633907 25.440593084156248 98 23.48867888512597 23.95226428508432 26.975776048004857 25.583280781784858 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 107.0 1 94.0 2 138.0 3 219.5 4 235.0 5 264.0 6 398.0 7 801.0 8 1279.0 9 1449.0 10 1457.0 11 1593.5 12 1809.5 13 2003.0 14 2282.0 15 2575.0 16 2749.5 17 2879.5 18 2935.5 19 2896.5 20 2949.5 21 3053.0 22 3193.5 23 3541.0 24 4141.5 25 5083.5 26 6450.0 27 8267.5 28 10651.5 29 14398.5 30 20072.0 31 28233.5 32 37866.5 33 48516.5 34 61032.0 35 75033.5 36 90011.0 37 104367.0 38 116945.0 39 129487.5 40 142473.0 41 153624.0 42 165639.0 43 178322.5 44 189702.5 45 200448.5 46 209328.0 47 216925.5 48 223516.0 49 225258.0 50 224054.0 51 222882.5 52 219570.0 53 215187.0 54 206818.0 55 194477.5 56 178688.0 57 160192.0 58 143320.0 59 125101.0 60 105749.0 61 87521.0 62 70784.0 63 54721.0 64 39973.5 65 29567.5 66 22423.5 67 16791.5 68 12308.0 69 9197.0 70 6821.0 71 5044.0 72 3857.5 73 2968.5 74 2326.5 75 1692.5 76 1080.5 77 613.5 78 322.5 79 175.5 80 106.0 81 74.0 82 55.0 83 34.5 84 21.5 85 17.0 86 11.5 87 11.0 88 12.0 89 10.5 90 8.0 91 7.0 92 6.5 93 5.0 94 4.0 95 3.5 96 1.5 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3843240989509225 2 0.024261374221175847 3 0.019186290838174778 4 0.016009206118735082 5 0.022363375557614473 6 0.02333300530965126 7 0.015349032670539822 8 0.009737558360880102 9 0.0 10-11 7.220647089635669E-5 12-13 0.005136974643769375 14-15 0.003579377914433682 16-17 0.006158180446446421 18-19 0.03669120242547725 20-21 0.07730218469961386 22-23 0.09740652923918516 24-25 0.06432565035852576 26-27 0.07436234981311934 28-29 0.05679554696504856 30-31 0.051823615683328 32-33 0.020279703111748176 34-35 0.3386174028735287 36-37 0.5184940370864812 38-39 0.4719208633583312 40-41 0.4802658683519244 42-43 0.4312170441930422 44-45 0.40553217097419525 46-47 0.4047172693740792 48-49 0.3951963304258882 50-51 0.3907298444404421 52-53 0.45028986771980833 54-55 0.45192998613016844 56-57 0.4227585718880404 58-59 0.40852358191133004 60-61 0.4225728981057354 62-63 0.4038301613030669 64-65 0.450011357046351 66-67 0.4707965054543736 68-69 0.41494995782110583 70-71 0.3739366823519752 72-73 0.3605888004462772 74-75 0.34293947591718205 76-77 0.34064949926875476 78-79 0.3400099562408156 80-81 0.3558025429468616 82-83 0.3515836220044888 84-85 0.352243795452684 86-87 0.3380294358962298 88-89 0.38027022137059846 90-91 0.3588971059852769 92-93 0.3489738738420919 94-95 0.3561842057215995 96-97 0.3563389338735203 98 0.35139794822218384 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4847211.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.37876855974698 #Duplication Level Percentage of deduplicated Percentage of total 1 74.458150656059 40.48942541912606 2 12.557010821342654 13.656695705120612 3 5.0379089338714795 8.218658518202366 4 2.5659648140288813 5.5813602701812295 5 1.4850444854109135 4.0377445186544305 6 0.9351342062467025 3.0510867944275275 7 0.6145519687577011 2.339300549390832 8 0.4399766178540038 1.914030933918649 9 0.31214095797622243 1.5276456820626039 >10 1.501384615487283 14.068882954127956 >50 0.06941579257836104 2.5356726614938148 >100 0.022092435814195 1.9316380620974314 >500 8.412907879283586E-4 0.3000882563758949 >1k 3.824037846876696E-4 0.3477696748205775 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2378252153661147E-4 2 0.0 0.0 0.0 2.0630420256101912E-5 1.2378252153661147E-4 3 0.0 0.0 0.0 2.0630420256101912E-5 1.2378252153661147E-4 4 0.0 0.0 0.0 2.0630420256101912E-5 1.2378252153661147E-4 5 0.0 2.0630420256101912E-5 0.0 2.0630420256101912E-5 1.4441294179271338E-4 6 0.0 2.0630420256101912E-5 0.0 2.0630420256101912E-5 2.4756504307322293E-4 7 0.0 2.0630420256101912E-5 0.0 2.0630420256101912E-5 2.4756504307322293E-4 8 0.0 2.0630420256101912E-5 0.0 2.0630420256101912E-5 2.4756504307322293E-4 9 0.0 2.0630420256101912E-5 0.0 2.0630420256101912E-5 2.4756504307322293E-4 10-11 0.0 4.1260840512203824E-5 0.0 2.0630420256101912E-5 2.4756504307322293E-4 12-13 0.0 8.252168102440765E-5 0.0 2.0630420256101912E-5 7.736407596038216E-4 14-15 0.0 9.28368911524586E-5 0.0 4.1260840512203824E-5 9.593145419087389E-4 16-17 0.0 1.0315210128050955E-4 0.0 5.1576050640254775E-5 0.001155303534341707 18-19 0.0 1.0315210128050955E-4 0.0 8.252168102440763E-5 0.0012378252153661146 20-21 0.0 1.340977316646624E-4 0.0 1.4441294179271338E-4 0.0014234989976710318 22-23 0.0 1.4441294179271338E-4 0.0 2.681954633293248E-4 0.0015060206786954395 24-25 0.0 1.4441294179271338E-4 0.0 8.045863899879746E-4 0.0015060206786954395 26-27 0.0 1.4441294179271338E-4 0.0 0.0017329553015125606 0.001640118410360102 28-29 0.0 1.650433620488153E-4 0.0 0.0069833972566904975 0.0016916944610003567 30-31 0.0 1.650433620488153E-4 0.0 0.029780011639683107 0.0017123248812564587 32-33 0.0 1.650433620488153E-4 0.0 0.08088156261404754 0.0017845313521528154 34-35 0.0 1.9598899243296816E-4 0.0 0.14858028668444595 0.0018773682433052739 36-37 0.0 2.4756504307322293E-4 0.0 0.26158341363724413 0.0018773682433052739 38-39 0.0 2.991410937134777E-4 0.0 0.4475047609852346 0.0020630420256101912 40-41 0.0 3.0945630384152865E-4 0.0 0.6616072624030602 0.0021249332863784967 42-43 0.0 3.0945630384152865E-4 0.0 0.8887585046328703 0.0021558789167626497 44-45 0.0 3.0945630384152865E-4 0.0 1.163988941269526 0.002248715807915108 46-47 0.0 3.0945630384152865E-4 0.0 1.4873295179434112 0.0023828135395797707 48-49 0.0 3.0945630384152865E-4 0.0 1.8353543924537223 0.002465335220604178 50-51 0.0 3.0945630384152865E-4 0.0 2.2079088366485387 0.0026819546332932484 52-53 0.0 3.3008672409763054E-4 0.0 2.59239797896151 0.0028882588358542676 54-55 0.0 3.8166277473788534E-4 0.0 3.0201903733920394 0.0028882588358542676 56-57 0.0 3.919779848659363E-4 0.0 3.511039647335344 0.0029604653067506243 58-59 0.0 4.126084051220382E-4 0.0 4.039395025304242 0.003042986987775032 60-61 0.0 4.5386924563424203E-4 0.0 4.600841597363927 0.0030945630384152864 62-63 0.0 4.5386924563424203E-4 0.0 5.170292772482981 0.003321497661232408 64-65 0.0 4.5386924563424203E-4 0.0 5.780561234078731 0.003424649762512917 66-67 1.0315210128050956E-5 4.5386924563424203E-4 0.0 6.469493488110999 0.0034555953928970705 68-69 2.0630420256101912E-5 4.5386924563424203E-4 0.0 7.219976600977345 0.003496856233409274 70-71 2.0630420256101912E-5 4.744996658903439E-4 0.0 8.006604210132384 0.0036000083346897833 72-73 2.0630420256101912E-5 4.951300861464459E-4 0.0 8.814347054419542 0.0038269429575069043 74-75 2.0630420256101912E-5 4.951300861464459E-4 0.0 9.645526056117632 0.004053877580324026 76-77 2.0630420256101912E-5 4.951300861464459E-4 0.0 10.551407809563067 0.004167344891732586 78-79 2.0630420256101912E-5 5.157605064025478E-4 0.0 11.525184276071332 0.004239551362628943 80-81 2.0630420256101912E-5 5.157605064025478E-4 0.0 12.525532723869457 0.004332388253781402 82-83 2.0630420256101912E-5 5.157605064025478E-4 0.0 13.544025626282824 0.004497431615830216 84-85 2.0630420256101912E-5 5.363909266586496E-4 0.0 14.575907671442401 0.004518062036086319 86 2.0630420256101912E-5 5.570213469147516E-4 0.0 15.364588007412923 0.004518062036086319 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4190 0.0 45.03989 1 GTATCAA 8000 0.0 43.09425 1 TCAACGC 10125 0.0 33.78564 4 ATCAACG 10215 0.0 33.487972 3 CAACGCA 10200 0.0 33.31244 5 TATCAAC 10610 0.0 32.241913 2 AACGCAG 11065 0.0 30.827808 6 GTACATG 15735 0.0 26.99992 1 ACGCAGA 12950 0.0 25.876797 7 TACATGG 16385 0.0 25.523825 2 CGCAGAG 13500 0.0 24.583082 8 ACATGGG 16755 0.0 24.275467 3 CATGGGG 11425 0.0 20.870628 4 GCAGAGT 15330 0.0 20.571848 9 GAGTACA 11585 0.0 18.633923 1 AGAGTAC 12865 0.0 18.100473 10-11 TATACCG 285 6.405753E-8 17.69849 5 TAAGGCG 1045 0.0 17.55222 5 GTATTAA 2185 0.0 17.484539 1 AGTACAT 11455 0.0 17.333654 2 >>END_MODULE