##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920885_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3213217 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.512688685513613 31.0 28.0 33.0 22.0 34.0 2 28.509621976978213 31.0 28.0 33.0 16.0 34.0 3 28.583060527813714 31.0 28.0 34.0 18.0 34.0 4 32.065685573056534 35.0 32.0 37.0 22.0 37.0 5 32.042545834906264 35.0 32.0 37.0 22.0 37.0 6 32.17549421654373 35.0 32.0 37.0 23.0 37.0 7 32.018040487150415 35.0 32.0 37.0 22.0 37.0 8 31.9574457622999 35.0 32.0 37.0 21.0 37.0 9 33.20676505819557 37.0 33.0 39.0 19.0 39.0 10-11 33.0049483119254 37.0 32.0 39.0 18.5 39.0 12-13 32.83648552214183 37.0 32.0 39.0 17.0 39.0 14-15 33.575879251230155 38.0 32.0 40.0 17.0 41.0 16-17 33.480289846592996 38.0 32.0 40.0 17.0 41.0 18-19 33.38962479035808 38.0 32.0 40.0 17.5 41.0 20-21 33.30690395326553 38.0 32.0 40.0 16.5 41.0 22-23 33.08346183902301 38.0 32.0 40.0 14.5 41.0 24-25 32.88999217917744 38.0 32.0 40.0 11.0 41.0 26-27 32.92863740606377 38.0 32.0 40.0 10.0 41.0 28-29 32.77399845699808 38.0 31.5 40.0 10.0 41.0 30-31 32.515539411125985 37.5 31.0 40.0 9.0 41.0 32-33 32.25949539044515 37.0 30.5 40.0 8.5 41.0 34-35 31.92135156137914 37.0 30.0 40.0 5.0 41.0 36-37 31.604901878709093 37.0 30.0 40.0 2.0 41.0 38-39 31.401160737043284 37.0 30.0 40.0 2.0 41.0 40-41 31.1993050889498 36.5 30.0 40.0 2.0 41.0 42-43 30.94086813931334 36.0 29.5 40.0 2.0 41.0 44-45 30.64768859370531 36.0 29.0 39.0 2.0 40.5 46-47 30.368843125129736 36.0 28.0 39.0 2.0 40.0 48-49 30.05362522979307 35.0 27.5 39.0 2.0 40.0 50-51 28.913098461759663 34.0 25.5 38.0 2.0 39.5 52-53 29.36053789706702 34.5 27.0 38.5 2.0 39.5 54-55 30.003573677096817 35.0 28.0 39.0 2.0 40.0 56-57 29.959416528668932 35.0 28.0 39.0 2.0 41.0 58-59 29.727586247676392 35.0 28.0 39.0 2.0 40.5 60-61 29.420332800430224 35.0 27.0 39.0 2.0 40.0 62-63 29.042702375843277 35.0 26.0 38.5 2.0 40.0 64-65 28.638925102163967 34.0 26.0 38.0 2.0 40.0 66-67 28.268614911473456 34.0 26.0 38.0 2.0 40.0 68-69 27.836874384767665 34.0 25.0 37.0 2.0 40.0 70-71 27.515233954009332 34.0 24.5 36.5 2.0 39.0 72-73 27.065336701505068 33.0 23.5 36.0 2.0 39.0 74-75 26.62793378100514 33.0 22.0 36.0 2.0 39.0 76-77 26.22010682751896 33.0 21.0 35.0 2.0 37.5 78-79 25.75083771186322 32.0 20.0 35.0 2.0 37.0 80-81 25.293123215767874 32.0 18.0 35.0 2.0 36.5 82-83 24.82055833764106 32.0 13.5 35.0 2.0 36.0 84-85 24.41681296345687 31.5 7.5 35.0 2.0 35.5 86-87 23.958886530228117 31.0 3.5 34.0 2.0 35.0 88-89 23.42315894009026 31.0 2.0 34.0 2.0 35.0 90-91 22.915154656532692 31.0 2.0 34.0 2.0 35.0 92-93 22.380122630995665 30.0 2.0 34.0 2.0 35.0 94-95 21.736479360093014 30.0 2.0 34.0 2.0 35.0 96-97 21.09794358737676 29.0 2.0 34.0 2.0 35.0 98 20.69975168188143 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 169235.0 3 27980.0 4 20635.0 5 16583.0 6 15550.0 7 15972.0 8 18457.0 9 21017.0 10 22950.0 11 24689.0 12 25985.0 13 25961.0 14 25085.0 15 26502.0 16 29628.0 17 32034.0 18 32843.0 19 30606.0 20 30702.0 21 32836.0 22 35637.0 23 39704.0 24 45380.0 25 51868.0 26 59555.0 27 68973.0 28 80068.0 29 92198.0 30 106953.0 31 125469.0 32 150268.0 33 180974.0 34 223652.0 35 282738.0 36 357363.0 37 393903.0 38 245976.0 39 27286.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.60711614441992 17.851284803866125 12.259358982129658 24.282240069584297 2 16.19054585978636 20.096094731288066 39.03014983867478 24.68320957025079 3 20.050027407374436 24.398664151185365 28.484495145579693 27.066813295860502 4 13.030238702351665 15.223842594898255 36.39625686026475 35.34966184248533 5 14.247533489907502 37.564042103821436 33.30105352937789 14.887370876893169 6 33.274791417186485 34.571159712038515 17.52360223911934 14.630446631655655 7 29.884415985418002 31.888693969735378 20.251418731993496 17.975471312853127 8 27.273194140375274 33.675474695462235 20.225266752611816 18.826064411550682 9 28.051451240299052 15.427124903173361 19.368906612905384 37.1525172436222 10-11 25.978933262210425 25.627774283529558 26.994628747451543 21.398663706808474 12-13 26.62259531217564 22.954177140888383 27.28948565022547 23.133741896710504 14-15 23.496650664988536 24.315439246298084 25.215364412037534 26.972545676675846 16-17 23.4564777367312 27.70883685160036 25.768152762365208 23.06653264930323 18-19 23.387348973642645 26.30014942108087 27.796181488940054 22.51632011633643 20-21 24.276011352531935 25.710930899832203 27.41890297789838 22.594154769737482 22-23 23.943703873076714 25.567969685646524 27.17385598844147 23.314470452835295 24-25 23.542001045098036 25.738715525934065 27.34841874425056 23.37086468471734 26-27 23.1278878268095 26.039586507425348 27.290438295651175 23.542087370113972 28-29 23.29706447200743 26.071620686407076 27.40632101095072 23.224993830634773 30-31 23.32524163769028 26.1740457720527 27.05171347052473 23.44899911973229 32-33 23.043992475215042 26.128316976041244 26.97128339232272 23.856407156420993 34-35 23.566394062817444 26.022982662295263 26.992449553090616 23.41817372179668 36-37 23.625682970359907 25.77935658052598 26.932987957197135 23.661972491916977 38-39 23.467923665141385 25.8802056355112 27.23397848366246 23.417892215684954 40-41 23.530752801896238 25.750019428023357 27.240621815582795 23.478605954497613 42-43 23.559010950163366 25.655117207975586 26.880724080451024 23.905147761410028 44-45 23.326731454245632 25.903714228841046 26.977118520395777 23.792435796517545 46-47 23.289634553623255 25.848595095039183 26.822118806203815 24.039651545133747 48-49 23.48734105231057 25.869712888042333 26.657670983594674 23.985275076052424 50-51 23.182727403955212 26.108688601728836 26.75240850132072 23.95617549299524 52-53 23.433808049690466 25.813319360911773 26.850902965658978 23.90196962373878 54-55 23.008644133052027 25.78263254407689 27.165922054145764 24.04280126872532 56-57 23.00252831362778 25.945179709669773 26.982758741934642 24.069533234767803 58-59 23.000143124821093 25.4863275170906 27.16516916853854 24.348360189549766 60-61 22.95131820324866 25.598538675666227 27.27240762685285 24.177735494232262 62-63 22.88135765351106 25.559935359653718 27.268407897896623 24.2902990889386 64-65 22.685811307211488 25.373604668393618 27.293539692037584 24.64704433235731 66-67 22.714821027622474 25.711950321349935 27.068504047928805 24.504724603098786 68-69 23.01336033913301 25.288826058700735 27.10981117139427 24.588002430771986 70-71 22.579984605368878 25.266422710079862 27.35838063975189 24.795212044799374 72-73 22.798557013025082 25.32344063592878 27.164703010585328 24.71329934046081 74-75 22.608023137124658 25.34660951089846 27.217756700117874 24.827610651859004 76-77 22.711089826956595 25.08168280076017 27.40515153223272 24.802075840050517 78-79 22.68931286315036 25.34965176913521 27.22908663019575 24.73194873751868 80-81 22.634650378459686 25.32725190854 27.24780129820075 24.790296414799563 82-83 22.86095989455964 25.10072427783035 27.088459340185704 24.949856487424302 84-85 22.66574510574318 24.925573440555883 27.31785793928067 25.09082351442026 86-87 22.77502529076771 24.818007182749785 27.430290930876687 24.976676595605817 88-89 22.714311823136413 24.664959847042304 27.38230208208042 25.238426247740858 90-91 22.671912208237444 24.715640047276715 27.498191515678528 25.114256228807314 92-93 22.973302378936104 24.504495669700113 27.47849763008975 25.043704321274035 94-95 22.8291843429197 24.301176022294527 27.60334605320796 25.26629358157781 96-97 23.080363563845196 24.066732184076958 27.608545290172216 25.24435896190563 98 23.063466939175278 23.995020388174858 27.466007215814827 25.475505456835034 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 178.0 1 143.0 2 219.0 3 363.0 4 357.0 5 388.0 6 608.0 7 1110.0 8 1690.0 9 1941.5 10 1813.0 11 1715.0 12 1780.0 13 1955.0 14 2259.5 15 2471.5 16 2625.0 17 2752.5 18 2835.5 19 2920.0 20 3047.0 21 3256.0 22 3588.5 23 4144.5 24 4851.0 25 5823.0 26 7265.0 27 9426.5 28 12448.0 29 16597.5 30 22273.5 31 29491.0 32 35969.5 33 41281.5 34 47835.5 35 56886.0 36 66661.5 37 75309.0 38 81772.5 39 88373.0 40 95579.5 41 101592.5 42 109619.5 43 117260.0 44 122026.5 45 125993.0 46 130336.0 47 138513.5 48 145519.0 49 145565.5 50 144407.0 51 140931.5 52 137165.0 53 135417.5 54 128606.5 55 119424.5 56 108846.0 57 97225.5 58 88571.0 59 78487.5 60 67155.0 61 55305.5 62 44090.0 63 33997.0 64 24930.5 65 18515.5 66 13510.5 67 10154.0 68 7513.5 69 5582.0 70 4230.0 71 3471.5 72 3055.0 73 2597.0 74 2174.5 75 1565.0 76 975.0 77 549.5 78 315.5 79 195.0 80 111.5 81 53.0 82 36.0 83 29.0 84 19.0 85 11.5 86 9.5 87 10.5 88 8.5 89 4.5 90 2.0 91 3.5 92 6.0 93 5.0 94 2.5 95 2.0 96 2.5 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3888626258357279 2 0.023714551491542588 3 0.01798820309988401 4 0.015965308287613316 5 0.02122483479951712 6 0.021909506889824123 7 0.015218393280005679 8 0.009803259474850282 9 0.0 10-11 0.0 12-13 0.0052906479705541205 14-15 0.0036256499327620884 16-17 0.0062398524593888305 18-19 0.03589860255314222 20-21 0.07716565672346437 22-23 0.09711451171831843 24-25 0.06333216835339786 26-27 0.07235739136199018 28-29 0.05553624296149311 30-31 0.052719750953639295 32-33 0.019715444054976678 34-35 0.3389126847019669 36-37 0.5197906023776172 38-39 0.47393313305637313 40-41 0.4828961131476648 42-43 0.4327127610740264 44-45 0.40825129457487624 46-47 0.4073643330033422 48-49 0.3981368205135227 50-51 0.3945889742273864 52-53 0.4523504014823774 54-55 0.45354857764041456 56-57 0.4249168356821217 58-59 0.41120783314665643 60-61 0.4249168356821217 62-63 0.4060883531986791 64-65 0.451727972309371 66-67 0.47377752576312154 68-69 0.41735432123009436 70-71 0.37660077112750245 72-73 0.3629851329679881 74-75 0.34515253716135574 76-77 0.3436898286047908 78-79 0.3433008103716618 80-81 0.3596084547044286 82-83 0.3550024788241815 84-85 0.3548779929895802 86-87 0.34113786899546467 88-89 0.383789828075726 90-91 0.36228490014835596 92-93 0.3517502863952232 94-95 0.3589704648020971 96-97 0.3586281287569436 98 0.3535708917262668 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3213217.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.239740260041685 #Duplication Level Percentage of deduplicated Percentage of total 1 73.37065704663497 33.19269467498363 2 11.129711902550023 10.070105512809148 3 5.090690585001754 6.90904559429157 4 2.8252454561462548 5.112534824276783 5 1.8259872123196144 4.130359360174847 6 1.2124442374390199 3.291039742891534 7 0.8750975284083088 2.7712429421177434 8 0.6197165922830569 2.2428654135778916 9 0.4741859985917281 1.930684627011444 >10 2.370868113719509 18.612273071036583 >50 0.12825840323626053 3.9863580241372945 >100 0.0725446533232127 5.943564433309597 >500 0.003687732248049459 1.1185931499432797 >1k 9.045380983182626E-4 0.6886386294387755 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4670 0.14533721189698673 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.1121458650318356E-5 0.0 5 0.0 0.0 0.0 3.1121458650318356E-5 0.0 6 0.0 0.0 0.0 3.1121458650318356E-5 0.0 7 0.0 0.0 0.0 3.1121458650318356E-5 0.0 8 0.0 0.0 0.0 3.1121458650318356E-5 0.0 9 0.0 0.0 0.0 3.1121458650318356E-5 0.0 10-11 0.0 0.0 0.0 4.6682187975477534E-5 0.0 12-13 0.0 0.0 0.0 6.224291730063671E-5 0.0 14-15 0.0 0.0 0.0 6.224291730063671E-5 0.0 16-17 0.0 0.0 0.0 7.780364662579589E-5 0.0 18-19 0.0 0.0 0.0 1.0892510527611425E-4 0.0 20-21 0.0 1.5560729325159178E-5 0.0 1.7116802257675096E-4 0.0 22-23 0.0 3.1121458650318356E-5 0.0 4.35700421104457E-4 0.0 24-25 0.0 3.1121458650318356E-5 0.0 0.0011826154287120976 0.0 26-27 0.0 3.1121458650318356E-5 0.0 0.0027075669025776973 0.0 28-29 0.0 3.1121458650318356E-5 0.0 0.010954753444912061 0.0 30-31 0.0 3.1121458650318356E-5 0.0 0.0420450906365801 0.0 32-33 0.0 3.1121458650318356E-5 0.0 0.10428800793721682 0.0 34-35 0.0 3.1121458650318356E-5 0.0 0.19365327645160596 0.0 36-37 0.0 3.1121458650318356E-5 0.0 0.3342600266337443 0.0 38-39 0.0 3.1121458650318356E-5 0.0 0.5677020879697823 0.0 40-41 0.0 3.1121458650318356E-5 0.0 0.841788774303136 0.0 42-43 0.0 3.1121458650318356E-5 0.0 1.11394593020017 0.0 44-45 0.0 3.1121458650318356E-5 0.0 1.4376713430807817 0.0 46-47 0.0 3.1121458650318356E-5 0.0 1.8225815436679191 0.0 48-49 0.0 3.1121458650318356E-5 0.0 2.2500970211473423 0.0 50-51 0.0 3.1121458650318356E-5 0.0 2.7269711320461703 0.0 52-53 0.0 3.1121458650318356E-5 0.0 3.1962982892222964 0.0 54-55 0.0 3.1121458650318356E-5 0.0 3.7018197028087427 0.0 56-57 0.0 3.1121458650318356E-5 0.0 4.2897507389012315 0.0 58-59 0.0 3.1121458650318356E-5 0.0 4.936999275181227 0.0 60-61 0.0 3.1121458650318356E-5 0.0 5.6383057851368275 0.0 62-63 0.0 3.1121458650318356E-5 0.0 6.327008104339047 0.0 64-65 0.0 3.1121458650318356E-5 0.0 7.028641389610474 0.0 66-67 0.0 3.1121458650318356E-5 0.0 7.81655891898991 0.0 68-69 0.0 3.1121458650318356E-5 0.0 8.695693443673427 0.0 70-71 0.0 3.1121458650318356E-5 0.0 9.646811902215132 0.0 72-73 0.0 3.1121458650318356E-5 0.0 10.573826791032165 0.0 74-75 0.0 3.1121458650318356E-5 0.0 11.502973499766744 0.0 76-77 0.0 3.1121458650318356E-5 0.0 12.492013455673863 0.0 78-79 0.0 3.1121458650318356E-5 0.0 13.577498811938316 0.0 80-81 0.0 3.1121458650318356E-5 0.0 14.727436709067579 0.0 82-83 0.0 3.1121458650318356E-5 0.0 15.889465292882491 0.0 84-85 0.0 3.1121458650318356E-5 0.0 17.021477229829173 0.0 86 0.0 3.1121458650318356E-5 0.0 17.86521109529795 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4000 0.0 50.27999 1 GTATCAA 7965 0.0 47.091827 1 ATCAACG 10365 0.0 36.101887 3 TCAACGC 10485 0.0 35.60123 4 CAACGCA 10715 0.0 34.794247 5 AACGCAG 11135 0.0 33.600163 6 TATCAAC 11280 0.0 33.01131 2 GTACATG 16480 0.0 29.434532 1 TACATGG 16555 0.0 28.365248 2 ACGCAGA 13150 0.0 28.065823 7 CGCAGAG 13285 0.0 27.847475 8 ACATGGG 17405 0.0 26.663403 3 GCAGAGT 14470 0.0 24.394732 9 GAGTACA 11675 0.0 22.863611 1 CATGGGA 9805 0.0 22.636372 4 CATGGGG 7195 0.0 22.307264 4 AGTACAT 12060 0.0 21.17989 2 GTCGTAC 160 6.3672436E-5 20.135008 1 GAGTACT 5420 0.0 19.459463 12-13 AGAGTAC 12975 0.0 19.1325 10-11 >>END_MODULE