FastQCFastQC Report
Mon 15 Aug 2016
SRR2920884_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920884_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3075822
Sequences flagged as poor quality0
Sequence length98
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA69300.030.4803751
GTACATG93550.026.8589941
TCAACGC80450.025.7102094
TACATGG94250.025.6455882
CAACGCA80300.025.5297855
ATCAACG82000.025.0005073
AACGCAG83100.024.8306986
TATCAAC84100.024.5414312
ACATGGG98350.023.4557193
GGTATCA47850.023.3703521
ACGCAGA93500.021.5279227
CATGGGG65750.021.1349894
CGCAGAG95050.020.9832258
GAGTACA66800.018.7384361
AGTACAT67950.018.089592
AGAGTAC72900.017.7363310-11
GCAGAGT107000.017.6113689
TAAGGCG6550.017.5046675
GCGTACG1600.001510312317.193589
TCGCGTA1650.001855632316.6725649
Produced by FastQC (version 0.11.5)