FastQCFastQC Report
Mon 15 Aug 2016
SRR2920884_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920884_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3075822
Sequences flagged as poor quality0
Sequence length101
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA65350.032.5226481
TCAACGC78350.026.5984234
CAACGCA79000.026.3134885
GGTATCA46450.025.9999161
ATCAACG80200.025.9848733
GTACATG95300.025.4948221
AACGCAG82500.025.3697436
TATCAAC83550.025.2818362
TACATGG96500.024.5944842
ACATGGG100600.023.0277883
ACGCAGA96750.021.3878387
CGCAGAG98250.020.8184248
CATGGGG66800.019.8270514
GTATAGG6200.019.1722151
TAAGGCG8000.018.3909055
GCAGAGT108800.018.0145859
AGAGTAC80100.017.92122510-11
GTGTAAG13400.017.7414531
CTAGACG2704.9110713E-717.5819344
TATACCG1350.0094491417.5779255
Produced by FastQC (version 0.11.5)