FastQCFastQC Report
Mon 15 Aug 2016
SRR2920883_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920883_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2793067
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA29250.049.2440031
GTATCAA52000.042.5095181
TCAACGC69900.031.2370934
ATCAACG71350.030.5357573
CAACGCA72800.029.9889975
TATCAAC75200.029.2249072
AACGCAG77100.028.6252736
GTACATG111350.023.9502051
TACATGG113400.023.3148232
ACGCAGA96600.022.4538147
TATACCG2354.7002686E-922.2157155
CGCAGAG98000.021.6956088
ACATGGG119700.021.4135953
GCAGAGT107350.019.0547359
CATGGGG85150.018.786044
GTGGTAT16450.018.2058621
TAAGGCG10050.017.9453955
TAAGGTA8350.017.6224044
AGAGTAC94700.017.43995310-11
TGGTATC16800.016.669892
Produced by FastQC (version 0.11.5)