##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920882_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4967649 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.26270515489319 31.0 30.0 34.0 27.0 34.0 2 30.28147540214697 31.0 30.0 34.0 26.0 34.0 3 30.422777454687317 31.0 30.0 34.0 27.0 34.0 4 34.060961030056674 35.0 35.0 37.0 30.0 37.0 5 33.576662119243935 35.0 35.0 37.0 28.0 37.0 6 33.51416776829442 35.0 35.0 37.0 28.0 37.0 7 33.3254157046925 35.0 35.0 37.0 27.0 37.0 8 33.261033740507834 35.0 35.0 37.0 27.0 37.0 9 34.59847646240706 38.0 35.0 39.0 27.0 39.0 10-11 34.40774096559559 38.0 34.0 39.0 27.0 39.0 12-13 34.229770158882 37.0 34.0 39.0 26.0 39.0 14-15 35.14302198082031 38.5 34.0 40.0 26.0 41.0 16-17 35.02052178002109 38.0 34.0 40.0 25.5 41.0 18-19 34.92757600224975 38.5 34.0 40.0 25.0 41.0 20-21 34.80948422483151 38.5 34.0 40.0 25.0 41.0 22-23 34.664874672103444 38.0 34.0 40.0 24.5 41.0 24-25 34.49391432446214 38.0 33.5 40.0 24.0 41.0 26-27 34.3192445762573 38.0 33.0 40.0 23.0 41.0 28-29 34.26336915108132 38.0 33.0 40.0 23.5 41.0 30-31 34.26195188106084 38.0 33.0 40.0 23.0 41.0 32-33 34.12435308935877 38.0 33.0 40.0 22.0 41.0 34-35 33.96635893558502 38.0 33.0 40.0 21.5 41.0 36-37 33.78196607691083 38.0 33.0 40.0 19.5 41.0 38-39 33.605183961266185 38.0 33.0 40.0 18.5 41.0 40-41 33.382060004642035 38.0 32.0 40.0 17.0 41.0 42-43 33.41668694789024 38.0 32.0 40.0 17.0 41.0 44-45 33.28991863152972 38.0 32.0 40.0 15.5 41.0 46-47 33.06174369404924 38.0 32.0 40.0 14.5 41.0 48-49 32.80779902122714 37.5 31.5 40.0 12.5 41.0 50-51 32.564288056583706 37.0 31.0 40.0 9.0 41.0 52-53 32.30885787220474 37.0 31.0 40.0 8.0 41.0 54-55 32.035300702606 37.0 31.0 40.0 7.5 41.0 56-57 31.717971619975565 36.0 30.0 39.5 6.5 41.0 58-59 31.39651915825776 36.0 30.0 39.0 2.0 41.0 60-61 31.071921647443286 35.5 29.0 39.0 2.0 40.0 62-63 30.75977036622354 35.0 29.0 39.0 2.0 40.0 64-65 30.359284643500377 35.0 29.0 38.5 2.0 40.0 66-67 29.93688322182183 34.5 28.0 38.0 2.0 40.0 68-69 29.50049631123294 34.0 28.0 37.5 2.0 40.0 70-71 29.07741891586946 34.0 27.5 37.0 2.0 39.0 72-73 28.6345726117123 34.0 26.0 36.0 2.0 39.0 74-75 28.1821176375384 33.5 26.0 36.0 2.0 39.0 76-77 26.71983165477271 31.5 25.0 34.5 2.0 36.5 78-79 27.56221615093981 33.0 26.0 35.0 2.0 37.0 80-81 27.5834964386574 33.0 26.0 35.0 2.0 37.0 82-83 27.24454857821074 33.0 26.0 35.0 2.0 36.0 84-85 26.918598314816524 33.0 25.5 35.0 2.0 36.0 86-87 26.38244328453963 33.0 24.0 35.0 2.0 35.5 88-89 26.016790538139873 32.5 23.5 35.0 2.0 35.0 90-91 25.658745414581425 32.0 22.0 35.0 2.0 35.0 92-93 25.354393798756718 32.0 20.0 35.0 2.0 35.0 94-95 24.97491902105 32.0 18.5 34.0 2.0 35.0 96-97 24.459794160175164 32.0 11.5 34.0 2.0 35.0 98-99 23.881247648535556 32.0 2.0 34.0 2.0 35.0 100-101 21.688674360849568 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 122223.0 3 54873.0 4 28660.0 5 20097.0 6 16931.0 7 16394.0 8 18771.0 9 21464.0 10 24661.0 11 27469.0 12 30707.0 13 33290.0 14 35740.0 15 38101.0 16 39961.0 17 41397.0 18 40783.0 19 39172.0 20 40020.0 21 41428.0 22 44480.0 23 50721.0 24 58849.0 25 69771.0 26 83204.0 27 98486.0 28 116199.0 29 137535.0 30 162833.0 31 192368.0 32 231371.0 33 282533.0 34 357417.0 35 465398.0 36 626815.0 37 759313.0 38 463268.0 39 34945.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.42297302366707 18.97433301372797 13.510593969825328 25.092099992779637 2 15.99625899494912 20.513969485364203 38.296345011493365 25.193426508193312 3 18.91954629746511 24.44126213523821 29.1491738646112 27.49001770268548 4 13.485809036804719 16.508700726535277 36.263727856599125 33.74176238006088 5 14.41850240129873 37.110090930467024 34.26533304129074 14.206073626943505 6 33.757575305687375 35.46424963540393 17.085464300014852 13.692710758893837 7 29.55645590483624 31.337147699929684 20.96012050291258 18.146275892321487 8 26.681088328209228 34.84610959790935 19.85888189864473 18.613920175236693 9 26.888849332526704 15.509458282339562 19.18641253742259 38.41527984771114 10-11 25.62279183010138 25.36080924293995 27.833899069543133 21.182499857415532 12-13 26.344015322200416 22.540077737575174 27.65670475753436 23.459202182690053 14-15 23.336607641121894 24.17121351395635 24.998090434983794 27.494088409937962 16-17 23.80130230924159 27.183748962978026 25.62585667306329 23.389092054717093 18-19 23.699106087153428 26.474474699532585 26.86400400670228 22.962415206611702 20-21 24.450724051061158 25.76599789359641 26.59515768827241 23.188120367070024 22-23 24.103868039120204 25.606727630724546 26.4025517626677 23.88685256748755 24-25 23.8577139918744 25.76474836967348 26.520991870170878 23.85654576828124 26-27 23.74106574073841 26.04506598246007 26.355315736332024 23.858552540469493 28-29 23.819412237010287 26.076210503336828 26.398404556430883 23.705972703222 30-31 23.97790926290951 25.870517940921495 26.254657398968334 23.89691539720066 32-33 23.78089324038764 25.94223703568266 26.169872498365905 24.1069972255638 34-35 24.098324017847077 25.957870914743165 26.15185517774592 23.791949889663837 36-37 24.19333225878646 25.809451428383884 26.100696586253175 23.896519726576482 38-39 24.03518435864099 25.875684792238278 26.194038739524167 23.89509210959656 40-41 24.11622378899491 25.685428373038306 26.300924321160906 23.89742351680588 42-43 24.015160849477873 25.660971885667898 26.181980123229216 24.141887141625013 44-45 23.898360867327096 25.727845925213572 26.22421994736339 24.14957326009594 46-47 23.88878093180278 25.800936978009307 26.101130394596016 24.209151695591892 48-49 23.89578188999054 25.725672614943946 26.20640269493913 24.17214280012639 50-51 23.81248581226334 25.84976174669095 26.188294355961062 24.149458085084643 52-53 23.941124827195654 25.74227607103464 26.138173418559656 24.17842568321005 54-55 23.63077826881499 25.62679722337482 26.30811890469107 24.43430560311912 56-57 23.604081096092496 25.720564376752304 26.297235309239802 24.3781192179154 58-59 23.581601991278646 25.526841023327506 26.33100427653038 24.56055270886347 60-61 23.644309782248126 25.55123561323801 26.405901619077333 24.398552985436528 62-63 23.47716488447128 25.622020230347776 26.356496991277577 24.544317893903365 64-65 23.36411458113144 25.42907529427396 26.290124836178936 24.91668528841566 66-67 23.339789382107295 25.56091853446518 26.20026371289429 24.89902837053323 68-69 23.448929918019534 25.39267804233745 26.245717349984975 24.912674689658044 70-71 23.251004342545112 25.26201498724217 26.237086754759208 25.24989391545351 72-73 23.295055824262402 25.278783980943516 26.148926929762737 25.277233265031345 74-75 23.148234801567604 25.370396357068607 26.06675853309614 25.414610308267648 76-77 23.150748305497327 25.174798009227377 26.295634274989972 25.378819410285324 78-79 23.08344434048856 25.144480546953 26.273620751206174 25.498454361352263 80-81 23.031605371169526 25.24261025276968 26.20786685388259 25.5179175221782 82-83 23.004787228206244 25.198746424074308 26.181911450622657 25.61455489709679 84-85 22.881240253143456 25.034074990346255 26.164609684826978 25.920075071683314 86-87 22.80912741718903 25.029129689839696 26.23941708730551 25.922325805665764 88-89 22.761201172768175 24.903082137426413 26.24920098154056 26.08651570826485 90-91 22.585149243993055 24.915414157013327 26.26528562690107 26.23415097209255 92-93 22.625358159676942 24.74300281800428 26.27797574807216 26.353663274246625 94-95 22.419486563597175 24.615321281741014 26.378632120584903 26.586560034076907 96-97 22.44986721007281 24.467307809416635 26.402361783476675 26.680463197033884 98-99 22.26494790063007 24.41473073310735 26.349917770152402 26.97040359611018 100-101 22.306972845264227 24.217213728594366 26.506950137134556 26.96886328900685 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 51.0 1 41.0 2 59.5 3 94.0 4 89.0 5 84.5 6 165.5 7 379.0 8 570.5 9 600.0 10 528.0 11 481.5 12 516.5 13 559.0 14 617.0 15 686.5 16 775.0 17 895.0 18 1042.0 19 1175.0 20 1347.5 21 1627.0 22 2017.0 23 2481.5 24 3031.0 25 3890.5 26 5124.5 27 6900.5 28 9324.0 29 12997.5 30 18454.0 31 25968.0 32 36017.0 33 46453.5 34 56535.5 35 68347.0 36 83013.0 37 97580.0 38 110216.0 39 122981.0 40 135904.0 41 148585.0 42 160897.5 43 173092.5 44 184172.5 45 194062.5 46 202634.5 47 210325.0 48 218461.5 49 223729.5 50 222694.0 51 219988.5 52 217537.5 53 215627.5 54 210559.0 55 197546.5 56 180463.0 57 162983.0 58 146840.0 59 127914.0 60 107528.0 61 89479.5 62 72882.5 63 56408.5 64 41820.0 65 31084.5 66 23051.5 67 17371.0 68 12776.0 69 9118.0 70 6951.5 71 5750.5 72 4833.5 73 3748.0 74 2635.5 75 1812.0 76 1190.5 77 699.0 78 369.0 79 186.0 80 105.0 81 59.5 82 31.5 83 20.5 84 11.5 85 5.5 86 2.5 87 4.0 88 3.0 89 1.5 90 1.0 91 0.0 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19025096177286277 2 0.0 3 0.012198929513739798 4 0.013084660369522888 5 0.006783893145429558 6 0.10685134960219612 7 0.14302540296224633 8 0.12341854265468435 9 0.14244162580729838 10-11 0.11429954088946301 12-13 0.11471221094727103 14-15 0.11647360753547605 16-17 0.0667015725144832 18-19 0.07983655850081195 20-21 0.0370195237223886 22-23 0.08410417080594865 24-25 0.057290682171787906 26-27 0.06565479968492138 28-29 0.04042153541846455 30-31 0.024629356864786543 32-33 0.03210774352213693 34-35 0.02031141894284399 36-37 0.024448184644285456 38-39 0.03292301851439182 40-41 0.025112482786122773 42-43 0.012984009135911172 44-45 0.02684368400424426 46-47 0.03389933548042545 48-49 0.008303726772966447 50-51 0.01553048534628755 52-53 0.006562460431483787 54-55 0.012319710994073856 56-57 0.005193603654364469 58-59 0.0037744212604392943 60-61 0.023099458113888482 62-63 0.010216100211589023 64-65 0.006824153638874244 66-67 0.04069329374921618 68-69 0.08967018402467646 70-71 0.02197216429743728 72-73 0.04429660791251556 74-75 0.08622791183515582 76-77 0.2473302763540661 78-79 0.08062163812298333 80-81 0.016808756013156324 82-83 0.011645347728875368 84-85 0.013346353576913344 86-87 0.26334388762168986 88-89 0.6265237338628393 90-91 0.26899042182730704 92-93 0.35614432501169063 94-95 0.00124807529678526 96-97 0.004358198415387238 98-99 0.003432207066159465 100-101 0.0053345153814208695 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4967649.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.109041616880454 #Duplication Level Percentage of deduplicated Percentage of total 1 72.03559310052722 36.096345325709855 2 13.387962658289364 13.417159560189267 3 5.579860478776373 8.388043828421754 4 2.7865728314610925 5.585299759206092 5 1.6464278949189064 4.125046195284218 6 1.0398371793683787 3.1263146697449806 7 0.7008001404342851 2.4581496381496084 8 0.502373590062114 2.0138767305315293 9 0.35307715034413195 1.5923121858507299 >10 1.8268219554568432 16.088723237407603 >50 0.10106354560302375 3.433473749223607 >100 0.03831791882367824 3.1486480806973223 >500 0.0010090286383417986 0.3371638530954559 >1k 2.8252729622880795E-4 0.1894431864880308 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0130246722342903E-5 2 0.0 0.0 0.0 0.0 2.0130246722342903E-5 3 0.0 0.0 0.0 0.0 2.0130246722342903E-5 4 0.0 0.0 0.0 6.039074016702871E-5 2.0130246722342903E-5 5 0.0 0.0 0.0 1.0065123361171451E-4 2.0130246722342903E-5 6 2.0130246722342903E-5 0.0 0.0 1.0065123361171451E-4 4.0260493444685805E-5 7 1.2078148033405742E-4 0.0 0.0 1.4091172705640032E-4 4.0260493444685805E-5 8 1.4091172705640032E-4 0.0 0.0 1.4091172705640032E-4 4.0260493444685805E-5 9 1.4091172705640032E-4 0.0 0.0 1.6104197377874322E-4 4.0260493444685805E-5 10-11 1.6104197377874322E-4 0.0 0.0 1.8117222050108612E-4 4.0260493444685805E-5 12-13 1.6104197377874322E-4 0.0 0.0 2.2143271394577194E-4 2.2143271394577194E-4 14-15 2.2143271394577194E-4 0.0 0.0 2.2143271394577194E-4 2.8182345411280064E-4 16-17 2.2143271394577194E-4 0.0 0.0 2.8182345411280064E-4 3.6234444100217224E-4 18-19 2.6169320739045774E-4 0.0 0.0 3.522793176410008E-4 3.6234444100217224E-4 20-21 3.12018824196315E-4 0.0 0.0 4.328003045303724E-4 3.6234444100217224E-4 22-23 3.2208394755748644E-4 0.0 0.0 5.938422783091156E-4 3.8247468772451514E-4 24-25 4.3280030453037244E-4 0.0 0.0 9.964472127559736E-4 3.8247468772451514E-4 26-27 4.629956746138868E-4 0.0 0.0 0.0013889870238416604 4.126700578080295E-4 28-29 5.636469082256013E-4 0.0 0.0 0.00443871940227661 4.3280030453037244E-4 30-31 6.039074016702871E-4 1.0065123361171451E-5 0.0 0.02191177355727025 4.629956746138868E-4 32-33 6.341027717538014E-4 2.0130246722342903E-5 0.0 0.06067256362114151 4.931910446974012E-4 34-35 6.844283885596587E-4 2.0130246722342903E-5 0.0 0.10969977951340765 5.233864147809155E-4 36-37 8.555354856995734E-4 2.0130246722342903E-5 0.0 0.19163994879670443 5.233864147809155E-4 38-39 9.259913492277736E-4 2.0130246722342903E-5 0.0 0.3347056122523955 5.233864147809155E-4 40-41 9.259913492277736E-4 2.0130246722342903E-5 0.0 0.5028032375073199 5.233864147809155E-4 42-43 0.0010065123361171452 2.0130246722342903E-5 0.0 0.6822643870370069 5.233864147809155E-4 44-45 0.0010669030762841738 2.0130246722342903E-5 0.0 0.8961885189553449 5.636469082256013E-4 46-47 0.0011977496799794028 2.0130246722342903E-5 0.0 1.1495276739560303 6.2403764839263E-4 48-49 0.001268205543507603 2.0130246722342903E-5 0.0 1.4236009830807288 6.743632651984872E-4 50-51 0.001268205543507603 2.0130246722342903E-5 0.0 1.7226961888813 7.246888820043445E-4 52-53 0.001268205543507603 2.0130246722342903E-5 0.0 2.028857111281413 8.25340115616059E-4 54-55 0.0012883357902299458 2.0130246722342903E-5 0.0 2.3685952852143943 9.058611025054307E-4 56-57 0.0013487265303969746 2.0130246722342903E-5 0.0 2.7609337938328573 9.461215959501165E-4 58-59 0.0013487265303969746 2.0130246722342903E-5 0.0 3.18153516884949 9.461215959501165E-4 60-61 0.001358791653758146 2.0130246722342903E-5 0.0 3.63897489536801 9.461215959501165E-4 62-63 0.0013889870238416604 2.0130246722342903E-5 0.0 4.101477378937199 0.001026642582839488 64-65 0.0014191823939251748 2.0130246722342903E-5 0.0 4.594809335361657 0.0010367077062006596 66-67 0.0015500289976204036 2.0130246722342903E-5 0.0 5.148048906031807 0.0010568379529230024 68-69 0.0015902894910650894 2.0130246722342903E-5 0.0 5.755006040080529 0.0010669030762841738 70-71 0.0016104197377874324 2.0130246722342903E-5 0.0 6.4050922277318705 0.0010870333230065168 72-73 0.0016305499845097752 2.0130246722342903E-5 0.0 7.066592265274781 0.001157489186534717 74-75 0.0016406151078709465 2.0130246722342903E-5 0.0 7.749249192122873 0.0011977496799794028 76-77 0.001650680231232118 2.0130246722342903E-5 0.0 8.484224630202334 0.00124807529678526 78-79 0.001650680231232118 2.0130246722342903E-5 0.0 9.287864339851708 0.001268205543507603 80-81 0.0017714617115661756 2.0130246722342903E-5 0.0 10.124094918944554 0.0012782706668687744 82-83 0.0017714617115661756 2.0130246722342903E-5 0.0 10.980918740434358 0.0013185311603134602 84-85 0.0018419175750943755 2.0130246722342903E-5 0.0 11.839081223331199 0.0013285962836746316 86-87 0.0019224385619837471 2.0130246722342903E-5 0.0 12.729200472899755 0.0013889870238416604 88-89 0.0019325036853449187 2.0130246722342903E-5 0.0 13.672755462392773 0.0014292475172863462 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6905 0.0 43.380848 1 GGTATCA 3965 0.0 43.169846 1 TCAACGC 8740 0.0 33.72807 4 ATCAACG 8810 0.0 33.460083 3 CAACGCA 8895 0.0 32.763145 5 TATCAAC 9560 0.0 30.932825 2 AACGCAG 9535 0.0 30.912495 6 GTACATG 14505 0.0 26.322008 1 ACGCAGA 11210 0.0 25.7426 7 TACATGG 14780 0.0 25.146456 2 CGCAGAG 11705 0.0 24.24675 8 ACATGGG 15500 0.0 23.64269 3 GCAGAGT 13800 0.0 19.80901 9 CATGGGG 10840 0.0 19.793402 4 AGAGTAC 11640 0.0 18.794376 10-11 GAGTACA 11340 0.0 17.484137 1 AGTACAT 10705 0.0 17.470243 2 GTATATA 1855 0.0 17.173233 1 CAGAGTA 13095 0.0 15.727664 10-11 GTATAGC 1675 0.0 15.328517 1 >>END_MODULE