##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920880_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3525421 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.60526671849972 31.0 30.0 33.0 22.0 34.0 2 28.632842999460205 31.0 28.0 34.0 16.0 34.0 3 28.709443212597872 31.0 28.0 34.0 20.0 34.0 4 32.185654706203884 35.0 32.0 37.0 22.0 37.0 5 32.15596208225911 35.0 32.0 37.0 22.0 37.0 6 32.28190079993283 35.0 32.0 37.0 23.0 37.0 7 32.118905231460296 35.0 32.0 37.0 22.0 37.0 8 32.06247395701109 35.0 32.0 37.0 22.0 37.0 9 33.33021531329166 37.0 33.0 39.0 22.0 39.0 10-11 33.14197694403023 37.0 32.5 39.0 19.0 39.0 12-13 32.97427059066137 37.0 32.0 39.0 18.0 39.0 14-15 33.74297325057064 38.0 32.5 40.0 17.0 41.0 16-17 33.64563310311024 38.0 32.0 40.0 17.0 41.0 18-19 33.54011662720566 38.0 32.0 40.0 17.5 41.0 20-21 33.4524902132256 38.0 32.0 40.0 17.5 41.0 22-23 33.23651274556997 38.0 32.0 40.0 16.0 41.0 24-25 33.05418246501624 38.0 32.0 40.0 15.0 41.0 26-27 33.09557610282573 38.0 32.0 40.0 12.0 41.0 28-29 32.94803840449127 38.0 32.0 40.0 10.0 41.0 30-31 32.713597042736176 38.0 31.0 40.0 9.5 41.0 32-33 32.478227281224 37.5 31.0 40.0 9.0 41.0 34-35 32.16072704508199 37.0 30.5 40.0 8.0 41.0 36-37 31.87399320535051 37.0 30.0 40.0 6.5 41.0 38-39 31.691690864722254 37.0 30.0 40.0 2.0 41.0 40-41 31.512196557517527 37.0 30.0 40.0 2.0 41.0 42-43 31.29313534468649 37.0 30.0 40.0 2.0 41.0 44-45 31.02988607601759 36.0 29.5 40.0 2.0 41.0 46-47 30.799832275350944 36.0 29.0 39.0 2.0 41.0 48-49 30.510331957516563 36.0 28.0 39.0 2.0 40.0 50-51 29.386217844620543 34.5 26.5 38.0 2.0 39.5 52-53 29.839140630296352 35.0 28.0 38.5 2.0 39.5 54-55 30.502293484948325 36.0 28.0 39.0 2.0 40.0 56-57 30.46954051728857 36.0 28.0 39.0 2.0 41.0 58-59 30.241525763873305 35.5 28.0 39.0 2.0 41.0 60-61 29.930425898070048 35.0 28.0 39.0 2.0 40.5 62-63 29.552579535890892 35.0 27.5 39.0 2.0 40.0 64-65 29.15020957780645 34.5 26.5 38.5 2.0 40.0 66-67 28.776272535960956 34.0 26.0 38.0 2.0 40.0 68-69 28.3356068679457 34.0 26.0 37.5 2.0 40.0 70-71 28.01742501108378 34.0 26.0 37.0 2.0 39.0 72-73 27.557511145477378 34.0 25.0 36.0 2.0 39.0 74-75 27.116178890407696 33.0 24.0 36.0 2.0 39.0 76-77 26.698339006887405 33.0 23.5 35.5 2.0 38.0 78-79 26.242250500011203 33.0 22.0 35.0 2.0 37.0 80-81 25.79014676545014 32.0 20.0 35.0 2.0 37.0 82-83 25.31373018995462 32.0 18.5 35.0 2.0 36.0 84-85 24.913037478360742 32.0 17.5 35.0 2.0 36.0 86-87 24.458382559132655 31.5 9.5 34.5 2.0 35.0 88-89 23.932411476530035 31.0 4.5 34.0 2.0 35.0 90-91 23.443508165407763 31.0 2.0 34.0 2.0 35.0 92-93 22.926677551418685 31.0 2.0 34.0 2.0 35.0 94-95 22.311021151800027 30.0 2.0 34.0 2.0 35.0 96-97 21.6813667076925 30.0 2.0 34.0 2.0 35.0 98 21.294415900966154 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 180974.0 3 30144.0 4 22053.0 5 17776.0 6 16164.0 7 16329.0 8 18784.0 9 21649.0 10 23881.0 11 25502.0 12 26525.0 13 26643.0 14 25443.0 15 26279.0 16 28132.0 17 30406.0 18 31343.0 19 31224.0 20 32348.0 21 34577.0 22 37197.0 23 41942.0 24 47844.0 25 54977.0 26 64262.0 27 73303.0 28 85448.0 29 98750.0 30 115105.0 31 135172.0 32 161661.0 33 195895.0 34 243659.0 35 310806.0 36 400135.0 37 460847.0 38 299409.0 39 32830.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.242796305640056 18.09468705117502 12.837718553919364 24.82479808926556 2 15.944965722030535 19.543790769192356 39.53926822784189 24.97197528093522 3 19.554942242810565 23.48026359838809 28.795723732366156 28.169070426435187 4 13.115156859023624 15.434289032762502 36.87606263296654 34.574491475247335 5 14.377160327625042 36.848482922648245 34.38462775904142 14.389728990685288 6 33.642597478354304 35.01983060219832 17.320333665947626 14.017238253499755 7 29.423840176572885 31.302423621730043 20.91171639398676 18.36201980771031 8 26.45918425819966 34.67555117804218 20.018717273848072 18.84654728991009 9 26.571663355950964 15.9220416511957 19.668629647352756 37.83766534550058 10-11 25.530848172820285 25.506453912789667 27.802393445659447 21.1603044687306 12-13 26.135732150774544 22.757547932238314 27.58902451097614 23.517695406011 14-15 23.19842611953963 24.42903078163997 25.211333108009686 27.161209990810708 16-17 23.347355679731102 27.316030989957607 25.945501348644402 23.39111198166689 18-19 23.21612382159713 26.768304837898445 27.30664048505967 22.708930855444756 20-21 24.100246478648334 26.081188207348653 27.029318397470064 22.78924691653295 22-23 23.64560518032381 25.973951303002718 26.761017075238602 23.619426441434868 24-25 23.403188811315843 26.044390628676595 27.007837630789204 23.544582929218357 26-27 23.332767967457634 26.327395099200423 26.882182246044863 23.45765468729708 28-29 23.33045969059737 26.414112494953386 26.852765189330484 23.402662625118758 30-31 23.66946536245021 26.21028645574657 26.669695812116544 23.450552369686672 32-33 23.38783259605935 26.309176734674423 26.6116709072215 23.691319762044728 34-35 23.678469515600106 26.198590466150296 26.713646384718153 23.409293633531444 36-37 23.708027115841094 26.07175290654159 26.641442186375073 23.57877779124224 38-39 23.602009707678107 26.17168585335769 26.618908226788367 23.60739621217584 40-41 23.653470578577977 25.996974744503575 26.770105094423087 23.57944958249536 42-43 23.567706942326254 25.848314012178257 26.74093727507972 23.843041770415766 44-45 23.454372937892956 26.134327089320553 26.680192251853292 23.7311077209332 46-47 23.549932708008864 25.990330060416827 26.572881761898138 23.886855469676167 48-49 23.34574164446693 25.98641517042407 26.72916244540602 23.938680739702985 50-51 23.33503957945186 26.139040311310417 26.76247274218431 23.76344736705341 52-53 23.38345528303548 25.970528054225277 26.836319175314365 23.80969748742487 54-55 23.154546528255548 25.989069942084285 26.9093444031074 23.94703912655277 56-57 23.21478166619903 25.996185799151988 26.892693911094085 23.896338623554897 58-59 23.115255933628916 25.83985631636375 26.991264998731147 24.053622751276187 60-61 23.283332436034716 25.769561750809068 27.05883743712144 23.888268376034777 62-63 23.074538437889238 25.74839683412386 27.152125500408612 24.024939227578283 64-65 23.011296286164985 25.666254068988152 27.053214842574608 24.269234802272248 66-67 23.00647259613206 25.84542604821658 26.876649605719116 24.27145174993224 68-69 23.012755439191345 25.626449805401364 26.9628057978544 24.397988957552887 70-71 22.891388060445152 25.419706600422803 27.103316226662205 24.585589112469837 72-73 22.97171904110601 25.444635795845088 27.06219328560129 24.52145187744761 74-75 22.873511331273015 25.431864071402586 27.130046502308037 24.56457809501636 76-77 22.848009718160814 25.357913168415298 27.18208914272183 24.611987970702067 78-79 22.79661038657566 25.346220611770974 27.19311478013422 24.664054221519145 80-81 22.927925235134705 25.30855024936804 27.12120823939332 24.642316276103937 82-83 22.873569058719564 25.245340309650206 27.251287599858642 24.62980303177159 84-85 22.966577659791444 25.1399043758448 27.211637721285463 24.681880243078293 86-87 22.818297785865905 25.069360680662516 27.32564626109785 24.78669527237373 88-89 22.89917829726428 24.959450165167702 27.32272287033463 24.818648667233383 90-91 22.878054140781064 24.967511033438086 27.398952552871258 24.755482272909596 92-93 22.97279141412517 24.75724562703398 27.413702752454444 24.856260206386406 94-95 22.905510991766157 24.71176423785672 27.46057756891462 24.922147201462504 96-97 23.038113017625484 24.558708155273695 27.480423403327425 24.922755423773395 98 23.07291602916106 24.408254842457005 27.426067614923937 25.092761513458 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 99.0 1 80.5 2 103.5 3 156.0 4 166.0 5 199.0 6 294.0 7 546.5 8 801.0 9 944.5 10 1064.0 11 1123.5 12 1254.5 13 1434.5 14 1631.5 15 1786.5 16 1887.0 17 1995.5 18 2015.0 19 2001.5 20 2016.0 21 2119.0 22 2296.0 23 2679.5 24 3243.5 25 4056.0 26 5356.0 27 6941.0 28 9264.0 29 13139.0 30 18821.0 31 26341.0 32 35704.0 33 45629.0 34 55973.0 35 66634.5 36 77480.0 37 88188.5 38 97791.0 39 106036.0 40 114373.0 41 122711.5 42 129893.5 43 136763.5 44 142662.0 45 148197.5 46 153953.5 47 158276.5 48 159884.0 49 158679.0 50 157366.0 51 155372.5 52 150762.0 53 145972.0 54 139749.0 55 130765.0 56 119814.5 57 108676.0 58 96785.5 59 82316.5 60 66952.0 61 52568.0 62 40924.0 63 31621.0 64 23683.5 65 17615.5 66 12976.0 67 9507.0 68 6790.5 69 4789.5 70 3511.0 71 2535.5 72 2020.0 73 1606.0 74 1185.0 75 848.5 76 572.0 77 344.5 78 203.0 79 114.0 80 65.0 81 42.0 82 25.5 83 12.5 84 7.5 85 7.0 86 8.5 87 7.5 88 7.0 89 6.5 90 3.0 91 1.0 92 2.0 93 3.5 94 3.5 95 1.5 96 0.0 97 1.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.38216712273512865 2 0.024224057211890436 3 0.018862995369914686 4 0.01611155093249856 5 0.022181747938756817 6 0.02320290257532363 7 0.015062030889360449 8 0.009502411201385593 9 0.0 10-11 4.254810985695042E-5 12-13 0.005219234809119251 14-15 0.0034463968984129838 16-17 0.00608437970954391 18-19 0.03739978856425942 20-21 0.07952241732264033 22-23 0.09868324946155367 24-25 0.06495678104827764 26-27 0.07455847117266279 28-29 0.05725557316416961 30-31 0.05318513732118802 32-33 0.020564919764192703 34-35 0.338087280923328 36-37 0.517555208299945 38-39 0.4723407502252922 40-41 0.48099219922953884 42-43 0.42972172685191357 44-45 0.40555440045316576 46-47 0.4036539182128886 48-49 0.39514429624149855 50-51 0.3918255436726564 52-53 0.45140708017567266 54-55 0.4517049169446713 56-57 0.421396480023237 58-59 0.4077243540558702 60-61 0.42219071140723335 62-63 0.40181016678575404 64-65 0.4523998694056681 66-67 0.47165998046758106 68-69 0.4142767629738406 70-71 0.3728916347863135 72-73 0.359857730466801 74-75 0.34171805296445446 76-77 0.340356513449032 78-79 0.33987430153731996 80-81 0.3557305638106768 82-83 0.3515183009348387 84-85 0.35163176256112394 86-87 0.3376334344181872 88-89 0.3796567842535686 90-91 0.3599570093898006 92-93 0.34895123164013603 94-95 0.35574474651396243 96-97 0.3560709486895324 98 0.35116373335269746 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3525421.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.01288704718946 #Duplication Level Percentage of deduplicated Percentage of total 1 70.94686153933152 33.354167879011825 2 11.73874456399355 11.037445445256761 3 5.486667445032284 7.738322305763829 4 3.1917977518891423 6.0022250874814995 5 2.1430189032044 5.037475281817015 6 1.4316753645637676 4.038431532148811 7 1.0175600867442463 3.348690619528489 8 0.7370758928815979 2.7721652557799104 9 0.5792404979702976 2.450859129381184 >10 2.6376209830073893 20.383087786483575 >50 0.07010704426292266 2.1896450294256926 >100 0.01926562343206054 1.4651395290730032 >500 1.8215184581532782E-4 0.050810005803293506 >1k 1.8215184091134395E-4 0.1315351130450324 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.1201947228430305E-4 2 0.0 0.0 0.0 0.0 3.1201947228430305E-4 3 0.0 0.0 0.0 0.0 3.1201947228430305E-4 4 0.0 0.0 0.0 0.0 3.1201947228430305E-4 5 0.0 0.0 0.0 0.0 3.1201947228430305E-4 6 0.0 0.0 0.0 0.0 5.389427248547053E-4 7 0.0 0.0 0.0 0.0 5.673081314260056E-4 8 0.0 0.0 0.0 0.0 5.956735379973059E-4 9 0.0 0.0 0.0 0.0 5.956735379973059E-4 10-11 0.0 0.0 0.0 2.8365406571300278E-5 6.524043511399064E-4 12-13 0.0 0.0 0.0 2.8365406571300278E-5 9.786065267098597E-4 14-15 2.8365406571300278E-5 0.0 0.0 2.8365406571300278E-5 0.0014182703285650139 16-17 2.8365406571300278E-5 0.0 0.0 2.8365406571300278E-5 0.001716107097563667 18-19 2.8365406571300278E-5 0.0 0.0 2.8365406571300278E-5 0.0017870206139919175 20-21 2.8365406571300278E-5 0.0 0.0 2.8365406571300278E-5 0.0019713957567053693 22-23 2.8365406571300278E-5 0.0 0.0 1.843751427134518E-4 0.0020848573829905705 24-25 2.8365406571300278E-5 0.0 0.0 4.963946149977549E-4 0.002340146042132273 26-27 2.8365406571300278E-5 0.0 0.0 0.001318991405565463 0.002467790371703124 28-29 2.8365406571300278E-5 0.0 0.0 0.0062687548522573616 0.0024961557782744244 30-31 2.8365406571300278E-5 0.0 0.0 0.02608199134231061 0.0025670692947026754 32-33 2.8365406571300278E-5 0.0 0.0 0.06980726557196999 0.0026663482177022263 34-35 2.8365406571300278E-5 2.8365406571300278E-5 0.0 0.13256572761097185 0.0028932714702726283 36-37 2.8365406571300278E-5 2.8365406571300278E-5 0.0 0.23611364429950354 0.0028932714702726283 38-39 2.8365406571300278E-5 2.8365406571300278E-5 0.0 0.4067457475291604 0.002964184986700879 40-41 2.8365406571300278E-5 2.8365406571300278E-5 0.0 0.607785566603251 0.00303509850312913 42-43 2.8365406571300278E-5 2.8365406571300278E-5 0.0 0.8129809177400373 0.003120194722843031 44-45 2.8365406571300278E-5 2.8365406571300278E-5 0.0 1.0636318329073322 0.003262021755699532 46-47 2.8365406571300278E-5 2.8365406571300278E-5 0.0 1.3545332599993023 0.0034038487885560335 48-49 2.8365406571300278E-5 2.8365406571300278E-5 0.0 1.671147928148156 0.003574041227983835 50-51 5.6730813142600556E-5 2.8365406571300278E-5 0.0 2.011220787531475 0.0036307720411264356 52-53 5.6730813142600556E-5 2.8365406571300278E-5 0.0 2.3576900460966224 0.0039569742166963885 54-55 5.6730813142600556E-5 2.8365406571300278E-5 0.0 2.7538696796779734 0.004198080172552441 56-57 5.6730813142600556E-5 2.8365406571300278E-5 0.0 3.203801758711938 0.004254810985695042 58-59 5.6730813142600556E-5 2.8365406571300278E-5 0.0 3.6998134407209804 0.004339907205408942 60-61 5.6730813142600556E-5 2.8365406571300278E-5 0.0 4.2230417303351855 0.0044250034251228434 62-63 5.6730813142600556E-5 2.8365406571300278E-5 0.0 4.758552240994764 0.004481734238265444 64-65 5.6730813142600556E-5 2.8365406571300278E-5 0.0 5.32478248697106 0.004552647754693695 66-67 7.09135164282507E-5 2.8365406571300278E-5 0.0 5.961415672057323 0.004623561271121946 68-69 8.509621971390084E-5 2.8365406571300278E-5 0.0 6.658382076920742 0.004680292084264546 70-71 8.509621971390084E-5 2.8365406571300278E-5 0.0 7.412221121959618 0.004850484523692348 72-73 8.509621971390084E-5 2.8365406571300278E-5 0.0 8.17184670993904 0.005431975358404003 74-75 8.509621971390084E-5 2.8365406571300278E-5 0.0 8.94359850922769 0.005602167797831805 76-77 8.509621971390084E-5 2.8365406571300278E-5 0.0 9.771939294626089 0.005630533204403106 78-79 8.509621971390084E-5 5.6730813142600556E-5 0.0 10.682837595850255 0.0056730813142600554 80-81 8.509621971390084E-5 5.6730813142600556E-5 0.0 11.636255641524798 0.005800725643830907 82-83 8.509621971390084E-5 5.6730813142600556E-5 0.0 12.61240856056624 0.00612692781940086 84-85 8.509621971390084E-5 5.6730813142600556E-5 0.0 13.579385270581868 0.00616947592925781 86 8.509621971390084E-5 5.6730813142600556E-5 0.0 14.324587049319783 0.006183658632543461 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5825 0.0 42.350407 1 TCAACGC 6765 0.0 35.92969 4 ATCAACG 6930 0.0 35.074223 3 GGTATCA 3230 0.0 34.767708 1 CAACGCA 7020 0.0 34.493896 5 TATCAAC 7205 0.0 33.799644 2 AACGCAG 7390 0.0 32.63719 6 ACGCAGA 8840 0.0 26.762447 7 GTACATG 10560 0.0 26.368183 1 CGCAGAG 8890 0.0 25.73262 8 TACATGG 10835 0.0 25.227194 2 ACATGGG 11595 0.0 22.861383 3 GCAGAGT 10545 0.0 20.520155 9 CATGGGG 7615 0.0 19.99464 4 GAGTACA 8060 0.0 19.7574 1 CGCCGTA 385 1.8189894E-12 19.12351 92 GTGTAGC 2075 0.0 18.63159 1 AGTACAT 7885 0.0 18.612291 2 AGAGTAC 8595 0.0 17.629066 10-11 GAGTACT 4065 0.0 16.358158 12-13 >>END_MODULE