##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920880_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3525421 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.228782888625215 31.0 30.0 34.0 26.0 34.0 2 30.246823287204563 31.0 30.0 34.0 26.0 34.0 3 30.385627702336826 31.0 30.0 34.0 27.0 34.0 4 34.02412704752142 35.0 35.0 37.0 30.0 37.0 5 33.55386377967341 35.0 35.0 37.0 28.0 37.0 6 33.48664400648887 35.0 35.0 37.0 28.0 37.0 7 33.304743178190634 35.0 33.0 37.0 27.0 37.0 8 33.239502459422575 35.0 33.0 37.0 27.0 37.0 9 34.5673313910594 38.0 34.0 39.0 27.0 39.0 10-11 34.38100867953076 37.5 34.0 39.0 27.0 39.0 12-13 34.20295334940139 37.0 34.0 39.0 26.0 39.0 14-15 35.110581970210085 38.0 34.0 40.0 26.0 41.0 16-17 34.995084275041194 38.0 34.0 40.0 25.5 41.0 18-19 34.906958346251415 38.5 34.0 40.0 25.0 41.0 20-21 34.79523991602705 38.0 34.0 40.0 25.0 41.0 22-23 34.64770434509808 38.0 34.0 40.0 24.5 41.0 24-25 34.476176462328894 38.0 33.0 40.0 24.0 41.0 26-27 34.29749269661694 38.0 33.0 40.0 23.0 41.0 28-29 34.24618222901605 38.0 33.0 40.0 23.5 41.0 30-31 34.23672662073551 38.0 33.0 40.0 23.0 41.0 32-33 34.09419414021758 38.0 33.0 40.0 22.0 41.0 34-35 33.931846863112234 38.0 33.0 40.0 21.0 41.0 36-37 33.748928851334355 38.0 33.0 40.0 19.0 41.0 38-39 33.58062781721672 38.0 32.5 40.0 18.5 41.0 40-41 33.35906080436918 38.0 32.0 40.0 17.0 41.0 42-43 33.3957097606215 38.0 32.0 40.0 17.0 41.0 44-45 33.26202969801337 38.0 32.0 40.0 15.5 41.0 46-47 33.031796486150164 38.0 32.0 40.0 14.5 41.0 48-49 32.78498894174625 37.5 31.5 40.0 11.5 41.0 50-51 32.53640699933426 37.0 31.0 40.0 9.0 41.0 52-53 32.290683013461376 37.0 31.0 40.0 8.0 41.0 54-55 32.023129436172304 37.0 31.0 40.0 7.5 41.0 56-57 31.7067964365107 36.0 30.0 39.5 6.5 41.0 58-59 31.388949716927424 36.0 30.0 39.0 2.0 41.0 60-61 31.067996276189426 35.5 29.0 39.0 2.0 40.0 62-63 30.754517261909996 35.0 29.0 39.0 2.0 40.0 64-65 30.361222248349915 35.0 28.5 38.5 2.0 40.0 66-67 29.932319005304613 34.5 28.0 38.0 2.0 40.0 68-69 29.492397645557794 34.0 28.0 37.5 2.0 40.0 70-71 29.07454244471795 34.0 27.5 37.0 2.0 39.0 72-73 28.630007309765276 34.0 26.0 36.0 2.0 39.0 74-75 28.18095810401084 33.5 26.0 36.0 2.0 39.0 76-77 26.717416870212098 31.5 25.0 34.5 2.0 36.5 78-79 27.56145365333672 33.0 26.0 35.0 2.0 37.0 80-81 27.580834175549533 33.0 26.0 35.0 2.0 37.0 82-83 27.235212191678666 33.0 26.0 35.0 2.0 36.0 84-85 26.90793326527527 33.0 25.5 35.0 2.0 36.0 86-87 26.36015159607888 33.0 24.0 35.0 2.0 35.5 88-89 25.997555894742785 32.0 23.5 35.0 2.0 35.0 90-91 25.627474704439557 32.0 21.5 35.0 2.0 35.0 92-93 25.322417804852243 32.0 20.0 34.0 2.0 35.0 94-95 24.951977933982917 32.0 18.5 34.0 2.0 35.0 96-97 24.42913087543303 32.0 11.5 34.0 2.0 35.0 98-99 23.83710371045047 32.0 2.0 34.0 2.0 35.0 100-101 21.651878456502075 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 85614.0 3 38536.0 4 20103.0 5 13922.0 6 11861.0 7 11731.0 8 13238.0 9 15265.0 10 17405.0 11 19729.0 12 21820.0 13 23990.0 14 25824.0 15 27533.0 16 28872.0 17 29644.0 18 29540.0 19 28153.0 20 28508.0 21 29644.0 22 32315.0 23 36523.0 24 42720.0 25 50112.0 26 59935.0 27 70463.0 28 83443.0 29 98338.0 30 115664.0 31 138037.0 32 165069.0 33 201371.0 34 252730.0 35 327693.0 36 440342.0 37 534420.0 38 330552.0 39 24762.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.237180525596315 19.503391906601074 13.535625676747179 24.723801891055427 2 15.993947956853946 20.657703009087424 38.49665047096503 24.8516985630936 3 19.305106382978725 24.394808510638295 29.172141843971634 27.127943262411346 4 13.454216989150428 16.437735536458575 36.460221076605166 33.64782639778583 5 14.250863074047073 37.16503223939703 34.4563555439565 14.127749142599406 6 33.50217195870411 35.6402834308145 17.050741884756988 13.806802725724406 7 29.218675214707023 31.546132007004697 20.91512699208492 18.32006578620336 8 26.331420184370042 35.14476135244078 19.92336990648584 18.600448556703345 9 26.2724608304251 15.965915837182735 19.689006726958 38.07261660543417 10-11 25.476511946325843 25.731595405402373 27.851052842245966 20.940839806025817 12-13 26.05808095257635 22.861017443936593 27.71241308523131 23.368488518255738 14-15 23.077342490292217 24.555432750932727 25.237689420293396 27.129535338481663 16-17 23.306179332777955 27.53177230944775 25.958533854273846 23.203514503500454 18-19 23.19802048918035 26.92145501936944 27.289029387639584 22.591495103810626 20-21 24.02571357672481 26.197171188751383 27.036711608721642 22.740403625802166 22-23 23.612671115286787 26.129267564613983 26.77275657126278 23.485304748836448 24-25 23.338491194928572 26.24808992616273 26.983482544252407 23.42993633465629 26-27 23.320352525438885 26.44105417027376 26.922214495550854 23.3163788087365 28-29 23.301521044988625 26.472879628099143 26.90620116158718 23.319398165325055 30-31 23.610839210639355 26.29804339474785 26.75981551245626 23.331301882156538 32-33 23.394816641068324 26.328236080920075 26.63639508023824 23.640552197773356 34-35 23.61072928289967 26.31472555606718 26.787885184280462 23.28665997675269 36-37 23.68493999524479 26.192448746706674 26.656592578805714 23.46601867924282 38-39 23.55576161713953 26.29928748910776 26.668396562491754 23.476554331260957 40-41 23.6337298956091 26.08741109835295 26.803362480391062 23.475496525646886 42-43 23.57123100163831 25.95234008751835 26.793480804828402 23.682948106014937 44-45 23.42604153263395 26.170984299392693 26.72937849155968 23.67359567641368 46-47 23.48275077843212 26.084537863077383 26.613504249082386 23.819207109408108 48-49 23.272663109911342 26.04989953542047 26.801844928531573 23.87559242613662 50-51 23.269463372896197 26.18715187807642 26.747565495894705 23.79581925313268 52-53 23.35096882190672 26.026162893364273 26.762961417469473 23.859906867259532 54-55 23.145145527370584 26.07251560067824 26.81781908518196 23.964519786769216 56-57 23.182351542026044 26.1233924360226 26.694898246180376 23.999357775770985 58-59 23.022947279917897 26.0020003982642 26.826725003106123 24.14832731871178 60-61 23.257589825220272 25.978154059290937 26.79040803214743 23.97384808334136 62-63 22.946046373217467 25.97216767253222 26.86288668874564 24.218899265504675 64-65 22.911722776495814 25.89121221882145 26.73292702835837 24.46413797632436 66-67 22.85416130174182 26.06324120205531 26.561276486766992 24.521321009435884 68-69 22.892864529443237 25.857281503921502 26.646152675593854 24.603701291041407 70-71 22.724909520116515 25.655389562480664 26.697966920954634 24.921733996448186 72-73 22.83670483938937 25.633212680854566 26.61891174396513 24.911170735790936 74-75 22.67812850694867 25.68719515362937 26.604576730369107 25.030099609052847 76-77 22.591602506429293 25.560153279366315 26.76325014587473 25.084994068329657 78-79 22.54107522828009 25.583693141824703 26.75574218583108 25.11948944406412 80-81 22.623154851084486 25.60492627915336 26.635409553481836 25.13650931628032 82-83 22.53644750739078 25.51311332961324 26.755453402708255 25.19498576028773 84-85 22.508928472643227 25.390422980806303 26.62134509933307 25.4793034472174 86-87 22.340091815706504 25.386158364176513 26.71955369671694 25.554196123400036 88-89 22.385151072992734 25.35242182611992 26.606663332830976 25.65576376805637 90-91 22.249061296045696 25.359995312879512 26.646919896314525 25.744023494760267 92-93 22.26424885510438 25.123427832293004 26.72525693256787 25.887066380034753 94-95 22.045239062711637 25.131372269533873 26.774328743051285 26.049059924703204 96-97 22.066101261241023 25.027373882989558 26.786989774932785 26.119535080836638 98-99 22.003134485008367 24.945763481122174 26.73478852863586 26.316313505233595 100-101 22.07407615431246 24.808729171967727 26.84420933968411 26.2729853340357 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 104.0 1 72.5 2 68.0 3 109.0 4 101.0 5 96.0 6 172.0 7 337.5 8 521.0 9 557.0 10 481.5 11 420.0 12 411.5 13 485.5 14 565.5 15 623.0 16 677.0 17 742.5 18 885.0 19 1048.5 20 1182.0 21 1358.0 22 1683.0 23 2147.5 24 2656.0 25 3298.5 26 4393.5 27 5796.0 28 7534.0 29 10607.0 30 15084.0 31 21265.0 32 29487.0 33 38275.0 34 47689.5 35 57947.0 36 68363.0 37 78856.5 38 88675.0 39 97510.5 40 105051.0 41 113401.5 42 121735.5 43 129137.0 44 136529.5 45 142255.0 46 147532.5 47 152336.0 48 156558.5 49 158845.0 50 157945.0 51 154671.5 52 149981.0 53 145486.5 54 139381.0 55 130737.0 56 120658.5 57 108546.5 58 96726.0 59 83649.5 60 67548.5 61 53047.0 62 41406.0 63 31414.5 64 23610.0 65 17908.5 66 13130.5 67 9428.0 68 6793.0 69 4875.5 70 3466.0 71 2528.5 72 1927.5 73 1557.0 74 1220.5 75 845.0 76 575.0 77 365.5 78 193.5 79 91.5 80 45.5 81 22.0 82 8.0 83 4.5 84 4.5 85 3.5 86 1.0 87 0.5 88 1.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19149485976284816 2 0.0 3 0.011941836166517417 4 0.013870683813365836 5 0.006552408917970364 6 0.10537748541238053 7 0.13972799277022518 8 0.1233895185851562 9 0.1406640511870781 10-11 0.11415657874619797 12-13 0.11174551918763745 14-15 0.11400056901005583 16-17 0.06541062755341845 18-19 0.07750847345607802 20-21 0.03660555718026301 22-23 0.08241568879291296 24-25 0.056645716922886655 26-27 0.06441783832342293 28-29 0.038676231859967936 30-31 0.024025499365891337 32-33 0.03131540885471551 34-35 0.020196169478765798 36-37 0.02459280749731734 38-39 0.031882716986141514 40-41 0.024961557782744243 42-43 0.012650971330799924 44-45 0.02664929947373661 46-47 0.03374065111656168 48-49 0.008452891158247483 50-51 0.014877655746646998 52-53 0.006736784060683816 54-55 0.011743278320518316 56-57 0.0048930326335492975 58-59 0.0034889450082699345 60-61 0.02225266145518507 62-63 0.009856978783526846 64-65 0.006708418654112516 66-67 0.038959885925680934 68-69 0.08820223173345822 70-71 0.021061314379190458 72-73 0.043285610427804225 74-75 0.08367794938533582 76-77 0.24692086420316892 78-79 0.08025991789349414 80-81 0.016168281745641156 82-83 0.011913470759946117 84-85 0.013104817835940728 86-87 0.2622949145648137 88-89 0.6225923088334698 90-91 0.26671991798993655 92-93 0.35278056152726156 94-95 0.0010920681529950607 96-97 0.004623561271121945 98-99 0.0034322141951273334 100-101 0.005219234809119251 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3525421.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.19670860825068 #Duplication Level Percentage of deduplicated Percentage of total 1 68.04783150781797 30.07490180574371 2 12.644820797861792 11.177189204132908 3 6.170915543618445 8.182024683822878 4 3.5709181991290815 6.312913244432291 5 2.2916699454916767 5.064213440359068 6 1.5750706256538067 4.176776248766183 7 1.154436761198702 3.57156135989462 8 0.8205045635114168 2.90108808842032 9 0.6355865428592652 2.5281749907068733 >10 2.981562748541343 21.6659876291243 >50 0.08320460888621778 2.4579072254699863 >100 0.02296333626016761 1.6521065913489028 >500 2.5740958624108275E-4 0.07340787581553349 >1k 2.5740958387608014E-4 0.1617476119624009 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.7019243942780168E-4 2 0.0 0.0 0.0 5.6730813142600556E-5 1.7019243942780168E-4 3 0.0 0.0 0.0 5.6730813142600556E-5 1.7019243942780168E-4 4 0.0 0.0 0.0 5.6730813142600556E-5 1.7019243942780168E-4 5 0.0 0.0 0.0 5.6730813142600556E-5 1.9855784599910194E-4 6 0.0 0.0 0.0 5.6730813142600556E-5 2.836540657130028E-4 7 0.0 0.0 0.0 5.6730813142600556E-5 3.1201947228430305E-4 8 0.0 0.0 0.0 5.6730813142600556E-5 3.4038487885560336E-4 9 0.0 0.0 0.0 5.6730813142600556E-5 4.254810985695042E-4 10-11 0.0 0.0 0.0 5.6730813142600556E-5 4.5384650514080445E-4 12-13 0.0 0.0 0.0 5.6730813142600556E-5 7.658659774251076E-4 14-15 0.0 0.0 0.0 5.6730813142600556E-5 0.0010778854497094106 16-17 0.0 0.0 0.0 5.6730813142600556E-5 0.001517549251564565 18-19 0.0 0.0 0.0 5.6730813142600556E-5 0.001730289800849317 20-21 0.0 0.0 0.0 9.927892299955098E-5 0.001829568723848868 22-23 0.0 0.0 0.0 2.552886591417025E-4 0.002113222789561871 24-25 0.0 0.0 0.0 5.105773182834051E-4 0.0022975979322753227 26-27 0.0 0.0 0.0 0.0012764432957085125 0.0025245211848457247 28-29 0.0 0.0 0.0 0.006226206742400411 0.0025812519979883253 30-31 0.0 0.0 0.0 0.025784154573311954 0.002623800107845276 32-33 0.0 0.0 0.0 0.06962289042925654 0.0027372617341304773 34-35 0.0 0.0 0.0 0.1326082757208288 0.002950002283415229 36-37 0.0 0.0 0.0 0.23632638484878826 0.002964184986700879 38-39 0.0 0.0 0.0 0.4077243540558702 0.00307764661298608 40-41 0.0 0.0 0.0 0.609047827195674 0.003106012019557381 42-43 0.0 0.0 0.0 0.8165407762647354 0.003162742832699981 44-45 0.0 0.0 0.0 1.067971740112741 0.0033045698655564826 46-47 0.0 2.8365406571300278E-5 0.0 1.3585327823258555 0.003559858524698185 48-49 0.0 2.8365406571300278E-5 0.0 1.6746936039695686 0.0038009644805542375 50-51 0.0 2.8365406571300278E-5 0.0 2.012681605969897 0.003971156919982039 52-53 0.0 2.8365406571300278E-5 0.0 2.3558746600760587 0.004212262875838092 54-55 0.0 2.8365406571300278E-5 0.0 2.7483242426932843 0.004368272611980243 56-57 0.0 2.8365406571300278E-5 0.0 3.1937320393791264 0.004453368831694143 58-59 0.0 2.8365406571300278E-5 0.0 3.6849074195677622 0.004538465051408045 60-61 0.0 2.8365406571300278E-5 0.0 4.204221283075128 0.004609378567836295 62-63 0.0 2.8365406571300278E-5 0.0 4.735547896265439 0.004793753710549747 64-65 0.0 2.8365406571300278E-5 0.0 5.296275253366903 0.004850484523692348 66-67 0.0 2.8365406571300278E-5 0.0 5.923803142943779 0.004921398040120598 68-69 0.0 2.8365406571300278E-5 0.0 6.610614732254673 0.004963946149977549 70-71 0.0 2.8365406571300278E-5 0.0 7.3546960774330215 0.005190869402547951 72-73 1.4182703285650139E-5 2.8365406571300278E-5 0.0 8.104819254211057 0.005701446720831356 74-75 2.8365406571300278E-5 2.8365406571300278E-5 0.0 8.875564081566427 0.005843273753687858 76-77 2.8365406571300278E-5 2.8365406571300278E-5 0.0 9.700004623561272 0.005914187270116108 78-79 2.8365406571300278E-5 2.8365406571300278E-5 0.0 10.606747392722742 0.0059567353799730586 80-81 2.8365406571300278E-5 2.8365406571300278E-5 0.0 11.557101974487587 0.00607019700625826 82-83 2.8365406571300278E-5 2.8365406571300278E-5 0.0 12.52758181221477 0.006353851071971262 84-85 2.8365406571300278E-5 2.8365406571300278E-5 0.0 13.491792895089691 0.006353851071971262 86-87 2.8365406571300278E-5 2.8365406571300278E-5 0.0 14.495743912571008 0.006524043511399064 88-89 2.8365406571300278E-5 2.8365406571300278E-5 0.0 15.554695453394077 0.0067367840606838165 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5630 0.0 40.638958 1 GGTATCA 3145 0.0 39.475327 1 TCAACGC 6665 0.0 33.33821 4 ATCAACG 6765 0.0 32.775223 3 CAACGCA 6965 0.0 32.169434 5 TATCAAC 7190 0.0 31.429064 2 AACGCAG 7315 0.0 30.435976 6 GTACATG 10740 0.0 25.42222 1 ACGCAGA 8805 0.0 24.638573 7 TACATGG 11010 0.0 24.405207 2 CGCAGAG 8810 0.0 24.243961 8 ACATGGG 11820 0.0 22.012007 3 CATGGGG 7485 0.0 19.980913 4 GCAGAGT 10645 0.0 19.217848 9 GAGTACA 8400 0.0 18.403904 1 AGTACAT 8160 0.0 17.628115 2 GTATAGG 820 0.0 17.402565 1 AGAGTAC 8715 0.0 17.398252 10-11 GTGTAGC 1950 0.0 17.075338 1 CAGAGTA 9685 0.0 15.655734 10-11 >>END_MODULE