##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920879_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4083011 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.837229926639925 31.0 30.0 33.0 23.0 34.0 2 28.861334686583014 31.0 30.0 34.0 22.0 34.0 3 28.94561366599306 31.0 30.0 34.0 22.0 34.0 4 32.43629639988724 35.0 33.0 37.0 25.0 37.0 5 32.42097290455499 35.0 33.0 37.0 25.0 37.0 6 32.55362402893355 35.0 33.0 37.0 25.0 37.0 7 32.40064991252779 35.0 33.0 37.0 25.0 37.0 8 32.34788762508845 35.0 33.0 37.0 24.0 37.0 9 33.63965392206879 37.0 33.0 39.0 24.0 39.0 10-11 33.461407280068556 37.0 33.0 39.0 23.0 39.0 12-13 33.30926527016459 37.0 33.0 39.0 22.0 39.0 14-15 34.11120690098557 38.0 33.0 40.0 20.5 41.0 16-17 34.01843737379106 38.0 33.0 40.0 19.0 41.0 18-19 33.921576503222745 38.0 33.0 40.0 18.5 41.0 20-21 33.834601596713796 38.0 33.0 40.0 18.0 41.0 22-23 33.633307257805576 38.0 32.0 40.0 18.0 41.0 24-25 33.46146459071504 38.0 32.0 40.0 18.0 41.0 26-27 33.51415168854554 38.0 32.0 40.0 17.0 41.0 28-29 33.365085472461374 38.0 32.0 40.0 16.0 41.0 30-31 33.14134360647081 38.0 32.0 40.0 15.5 41.0 32-33 32.909083394583064 38.0 31.5 40.0 12.5 41.0 34-35 32.597995817302476 37.5 31.0 40.0 9.0 41.0 36-37 32.31414757393502 37.0 30.5 40.0 9.0 41.0 38-39 32.13583015083721 37.0 30.0 40.0 8.0 41.0 40-41 31.96151724793296 37.0 30.0 40.0 7.5 41.0 42-43 31.749346132057937 37.0 30.0 40.0 4.0 41.0 44-45 31.490801151405176 37.0 30.0 40.0 2.0 41.0 46-47 31.262956798303996 36.5 30.0 40.0 2.0 41.0 48-49 30.979954621724016 36.0 29.0 39.0 2.0 40.5 50-51 29.824765718240776 34.5 27.5 38.0 2.0 39.5 52-53 30.274102861834074 35.5 28.5 38.5 2.0 39.5 54-55 30.95450661288936 36.0 29.0 39.0 2.0 40.5 56-57 30.928971535957167 36.0 29.0 39.0 2.0 41.0 58-59 30.704151544044336 36.0 29.0 39.0 2.0 41.0 60-61 30.400790005219186 35.0 28.5 39.0 2.0 40.5 62-63 30.030464404822816 35.0 28.0 39.0 2.0 40.0 64-65 29.63218210776312 35.0 28.0 38.5 2.0 40.0 66-67 29.264102643857683 34.0 27.5 38.0 2.0 40.0 68-69 28.822449412945495 34.0 26.0 37.5 2.0 40.0 70-71 28.501461299026623 34.0 26.0 37.0 2.0 39.0 72-73 28.047229483339624 34.0 26.0 36.0 2.0 39.0 74-75 27.61204329353999 33.5 26.0 36.0 2.0 39.0 76-77 27.193375917919397 33.0 25.0 35.5 2.0 38.0 78-79 26.729242585924943 33.0 24.5 35.0 2.0 37.0 80-81 26.283509522751714 33.0 23.5 35.0 2.0 36.5 82-83 25.809733062193562 32.0 21.5 35.0 2.0 36.0 84-85 25.414714900351726 32.0 20.0 35.0 2.0 36.0 86-87 24.959288010735214 32.0 18.0 34.5 2.0 35.0 88-89 24.430280986262346 31.5 11.5 34.0 2.0 35.0 90-91 23.944247027500047 31.0 4.5 34.0 2.0 35.0 92-93 23.421661734440587 31.0 2.0 34.0 2.0 35.0 94-95 22.802838885322622 31.0 2.0 34.0 2.0 35.0 96-97 22.165528331909954 30.0 2.0 34.0 2.0 35.0 98 21.780070394128256 30.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 185766.0 3 31247.0 4 22802.0 5 18365.0 6 17072.0 7 17440.0 8 20273.0 9 23038.0 10 25583.0 11 27570.0 12 28713.0 13 29293.0 14 27321.0 15 28448.0 16 30931.0 17 33944.0 18 35235.0 19 34710.0 20 35968.0 21 38323.0 22 42140.0 23 47253.0 24 54139.0 25 62575.0 26 73168.0 27 84662.0 28 98192.0 29 114913.0 30 133854.0 31 158457.0 32 189536.0 33 230866.0 34 288999.0 35 368342.0 36 476607.0 37 551477.0 38 357721.0 39 38065.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.83710610937219 17.601105980541096 12.187126675634032 25.374661234452677 2 16.260612722503687 19.77008391207177 38.61929818415482 25.350005181269726 3 20.072117622274156 22.960447991534018 28.80582134230884 28.161613043882983 4 13.532595795382088 15.218670947238103 36.21770556504498 35.031027692334824 5 14.511401050444872 36.396420452318424 34.37191333829812 14.720265158938581 6 33.84748913303362 34.70873786407767 17.092052710176343 14.351720292712372 7 29.3878529832075 31.216058718142044 20.698688865275432 18.697399433375026 8 26.71268090889028 34.196155486303134 20.05812892560688 19.033034679199705 9 26.651777328055203 15.923836599999364 19.363332599397847 38.06105347254759 10-11 25.553828480235357 25.23422362004702 27.735123385061094 21.476824514656524 12-13 26.354958847567794 22.528695627042023 27.439702351947194 23.676643173442987 14-15 23.245860893495436 24.241014811581806 25.00867033759943 27.504453957323328 16-17 23.46405550530386 27.268214974058125 25.749985120436293 23.517744400201725 18-19 23.419193017379985 26.544491233443075 27.10974044866396 22.926575300512976 20-21 24.114147125794442 25.954812728712152 26.883803809397754 23.04723633609565 22-23 23.728695347763114 25.777489264936175 26.772756423142436 23.721058964158274 24-25 23.45774318333791 25.821222767386086 27.02318104403108 23.69785300524492 26-27 23.377318239348867 26.120161684847883 26.8103149089861 23.692205166817157 28-29 23.410799827089846 26.444581511356297 26.65531576197604 23.489302899577822 30-31 23.6727679100353 26.10709013316827 26.521485083092795 23.698656873703637 32-33 23.452628293841553 26.1311582752573 26.479228645292434 23.936984785608715 34-35 23.74558585241354 26.06275913668188 26.596997095592567 23.594657915312016 36-37 23.80604421076422 25.904156093487302 26.538608405052873 23.751191290695612 38-39 23.63466162257909 25.916103941901287 26.628729372996172 23.82050506252345 40-41 23.7691001906712 25.763180092917604 26.76383781319391 23.70388190321729 42-43 23.66853163538775 25.71049404657215 26.57966622430543 24.041308093734663 44-45 23.558128577197124 25.806552360304565 26.727641426703148 23.90767763579516 46-47 23.56134617574217 25.793811907910218 26.63351795914985 24.011323957197764 48-49 23.35145275215952 25.833136516766004 26.634807996576193 24.180602734498283 50-51 23.27021841551444 25.95716765269895 26.75540260532834 24.017211326458277 52-53 23.39849015094677 25.79042328743312 26.671018901467892 24.140067660152216 54-55 23.132442260110995 25.64594976577067 26.984380241650907 24.237227732467428 56-57 23.103118050415116 25.792776115005033 26.873730758223964 24.230375076355887 58-59 23.083341725531945 25.546184574511845 26.923046182422667 24.447427517533544 60-61 22.96540846663982 25.496779430166672 27.10301211672144 24.43479998647207 62-63 22.97840565343844 25.41141837377329 27.143063007056963 24.467112965731307 64-65 22.814135555665448 25.32980822765766 27.053193224652418 24.802862992024473 66-67 22.8350021015455 25.42539070536135 26.967725773413036 24.77188141968011 68-69 22.969705257224202 25.244122827771665 26.97354344063162 24.812628474372513 70-71 22.77196713150471 25.077469592954294 27.07203658064397 25.078526694897025 72-73 22.74461202049324 25.0351316493575 27.203904166612386 25.016352163536876 74-75 22.76609290096579 25.08808252336815 27.143462232678928 25.002362342987134 76-77 22.784715714045756 24.945495152714944 27.21352101129147 25.056268121947827 78-79 22.765744298082698 24.997017211946538 27.249006832949984 24.988231657020783 80-81 22.81076631566632 24.88142339608506 27.256752973540156 25.051057314708462 82-83 22.79476635091364 24.821294422316488 27.324382990013724 25.059556236756148 84-85 22.809238205079208 24.762331954291934 27.300337520023543 25.12809232060531 86-87 22.875949102056133 24.680941728445184 27.346143912341393 25.096965257157294 88-89 22.893046135206554 24.451239060676063 27.367191518194755 25.288523285922633 90-91 22.91719027699104 24.462463945396472 27.431142451463554 25.18920332614894 92-93 23.100588385650664 24.207977369026434 27.46251929334736 25.22891495197554 94-95 23.040311389173052 24.0874351538831 27.545313013859236 25.32694044308461 96-97 23.221301138994043 23.91124304205143 27.461371426057312 25.40608439289721 98 23.340228260089482 23.74507581306228 27.42340781754923 25.49128810929901 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 132.0 1 107.0 2 144.5 3 244.5 4 257.0 5 284.5 6 454.0 7 797.5 8 1206.5 9 1371.5 10 1347.5 11 1447.5 12 1609.0 13 1799.5 14 2062.0 15 2257.0 16 2379.0 17 2530.5 18 2593.0 19 2602.0 20 2673.0 21 2798.0 22 3034.0 23 3402.0 24 4018.0 25 4827.0 26 5994.0 27 7568.0 28 9630.5 29 12903.0 30 17992.0 31 25641.5 32 34367.5 33 44032.5 34 55003.5 35 66705.0 36 79521.0 37 92424.5 38 104479.0 39 115928.5 40 127996.5 41 138480.5 42 148979.0 43 159896.0 44 168556.0 45 176122.5 46 183002.5 47 188179.0 48 191239.5 49 191705.0 50 190900.0 51 189035.0 52 184407.0 53 178440.5 54 169917.5 55 157714.5 56 141309.5 57 125066.0 58 111144.5 59 94452.5 60 77624.0 61 63311.0 62 50520.5 63 38412.5 64 27995.5 65 20908.0 66 15896.5 67 12236.5 68 9050.0 69 6489.0 70 4689.0 71 3401.5 72 2522.0 73 1845.0 74 1344.5 75 936.0 76 633.0 77 408.0 78 231.0 79 125.5 80 80.0 81 49.0 82 26.5 83 25.0 84 22.0 85 12.5 86 9.5 87 7.5 88 7.5 89 9.0 90 7.0 91 6.0 92 6.5 93 6.0 94 5.0 95 3.5 96 1.5 97 1.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3837853975901608 2 0.024491729265485693 3 0.019372957848999183 4 0.016899293193185127 5 0.02280179994616718 6 0.02240993227791941 7 0.014523595454433016 8 0.00886600599410582 9 0.0 10-11 1.2245864632742847E-5 12-13 0.004959575176260852 14-15 0.0030614661581857116 16-17 0.005633097731061709 18-19 0.03547626984105602 20-21 0.07594885245227113 22-23 0.09441561631844735 24-25 0.06334785774517873 26-27 0.07286289456481994 28-29 0.0558166509960419 30-31 0.05195920363672789 32-33 0.019360711984366438 34-35 0.33922269619160955 36-37 0.5202043295989162 38-39 0.47453950038341797 40-41 0.4833075394604619 42-43 0.43365055837468963 44-45 0.40727296595576157 46-47 0.40626880505587665 48-49 0.39665580131917355 50-51 0.3927983539598595 52-53 0.451443799686065 54-55 0.45337864629803837 56-57 0.42482128997448204 58-59 0.40985684339327033 60-61 0.42489476516227853 62-63 0.40484828475847845 64-65 0.451921388406742 66-67 0.4735475853481659 68-69 0.41697169074489393 70-71 0.3743805735522143 72-73 0.36105707283179006 74-75 0.34184331122301653 76-77 0.3398839728817777 78-79 0.33875735333556534 80-81 0.3562077104372239 82-83 0.35212983751452054 84-85 0.35178695330480375 86-87 0.337251111985738 88-89 0.38145868330993965 90-91 0.3600896495258034 92-93 0.34903163376243657 94-95 0.3559383014153036 96-97 0.3564158901359805 98 0.3506970713524896 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4083011.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.043374730752504 #Duplication Level Percentage of deduplicated Percentage of total 1 73.53743752740954 39.742112930330954 2 12.671861909650984 13.696603634392341 3 5.309595792846611 8.608454253049091 4 2.718490481952916 5.876655992726616 5 1.6066260071095735 4.341374567719766 6 1.039153115360364 3.3695604729629416 7 0.6881482681870523 2.603289830956587 8 0.49088895231654134 2.122343648098347 9 0.35059651213120285 1.705267681596127 >10 1.5145995016743115 13.665613577862235 >50 0.052557577957012505 1.9139123954215878 >100 0.018951009884279918 1.754452602867408 >500 6.377837521552468E-4 0.21894557003362256 >1k 4.5555976733005336E-4 0.3814128419823604 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.347518779645708E-5 2 0.0 0.0 0.0 2.4491729265485693E-5 7.347518779645708E-5 3 0.0 0.0 0.0 2.4491729265485693E-5 7.347518779645708E-5 4 0.0 0.0 0.0 2.4491729265485693E-5 7.347518779645708E-5 5 0.0 0.0 0.0 2.4491729265485693E-5 9.796691706194277E-5 6 0.0 0.0 0.0 2.4491729265485693E-5 9.796691706194277E-5 7 0.0 0.0 0.0 2.4491729265485693E-5 9.796691706194277E-5 8 0.0 0.0 0.0 2.4491729265485693E-5 9.796691706194277E-5 9 0.0 0.0 0.0 2.4491729265485693E-5 9.796691706194277E-5 10-11 0.0 0.0 0.0 4.8983458530971386E-5 1.7144210485839985E-4 12-13 0.0 0.0 0.0 4.8983458530971386E-5 3.306383450840569E-4 14-15 0.0 1.2245864632742847E-5 0.0 6.122932316371423E-5 4.2860526214599966E-4 16-17 0.0 2.4491729265485693E-5 0.0 9.796691706194277E-5 4.898345853097139E-4 18-19 0.0 4.8983458530971386E-5 0.0 1.1021278169468562E-4 5.265721792079424E-4 20-21 0.0 4.8983458530971386E-5 0.0 1.9593383412388555E-4 5.63309773106171E-4 22-23 0.0 4.8983458530971386E-5 0.0 5.143263145751995E-4 6.122932316371423E-4 24-25 0.0 7.347518779645708E-5 0.0 0.0013103075157034844 6.612766901681137E-4 26-27 0.0 9.796691706194277E-5 0.0 0.0026573526253051974 7.347518779645708E-4 28-29 0.0 9.796691706194277E-5 0.0 0.01131517892065439 7.347518779645708E-4 30-31 0.0 9.796691706194277E-5 0.0 0.0515305983745819 7.714894718627993E-4 32-33 0.0 9.796691706194277E-5 0.0 0.13373708765418463 8.082270657610278E-4 34-35 0.0 9.796691706194277E-5 0.0 0.24675417234976832 8.572105242919992E-4 36-37 0.0 9.796691706194277E-5 0.0 0.42357221178194226 8.572105242919992E-4 38-39 0.0 9.796691706194277E-5 0.0 0.7015166013513067 9.306857120884563E-4 40-41 0.0 9.796691706194277E-5 0.0 1.0155373081287316 9.306857120884563E-4 42-43 0.0 1.1021278169468562E-4 0.0 1.3447551329153902 9.306857120884563E-4 44-45 0.0 1.347045109601713E-4 0.0 1.7445091379866475 9.674233059866848E-4 46-47 0.0 1.4695037559291416E-4 0.0 2.2119215451538095 0.0010041608998849134 48-49 0.0 1.4695037559291416E-4 0.0 2.700249889113696 0.001028652629150399 50-51 0.0 1.4695037559291416E-4 0.0 3.232124527707616 0.0010531443584158846 52-53 0.0 1.4695037559291416E-4 0.0 3.7606315535275314 0.0011021278169468561 54-55 0.0 1.4695037559291416E-4 0.0 4.361315705492833 0.0011143736815795988 56-57 0.0 1.4695037559291416E-4 0.0 5.054933724156021 0.0011633571401105703 58-59 2.4491729265485693E-5 1.4695037559291416E-4 0.0 5.781982953266597 0.0011756030047433133 60-61 2.4491729265485693E-5 1.4695037559291416E-4 0.0 6.532654455253733 0.001187848869376056 62-63 4.8983458530971386E-5 1.4695037559291416E-4 0.0 7.295277921122427 0.0012245864632742846 64-65 4.8983458530971386E-5 1.4695037559291416E-4 0.0 8.109934065815644 0.0012245864632742846 66-67 4.8983458530971386E-5 1.59196240225657E-4 0.0 9.04534668165234 0.0012368323279070273 68-69 4.8983458530971386E-5 1.7144210485839985E-4 0.0 10.034126775558526 0.0012490781925397702 70-71 4.8983458530971386E-5 1.7144210485839985E-4 0.0 11.06171401448588 0.0012613240571725131 72-73 4.8983458530971386E-5 1.836879694911427E-4 0.0 12.099342862412078 0.0012980616510707417 74-75 4.8983458530971386E-5 1.9593383412388555E-4 0.0 13.16644750650929 0.0013715368388671988 76-77 4.8983458530971386E-5 1.9593383412388555E-4 0.0 14.327086064671391 0.00142052029739817 78-79 4.8983458530971386E-5 1.9593383412388555E-4 0.0 15.559215980559445 0.0014450120266636557 80-81 4.8983458530971386E-5 1.9593383412388555E-4 0.0 16.804681643032556 0.0014572578912963987 82-83 4.8983458530971386E-5 1.9593383412388555E-4 0.0 18.06833241448529 0.0015429789437255985 84-85 4.8983458530971386E-5 1.9593383412388555E-4 0.0 19.34937231371652 0.0015552248083583414 86 4.8983458530971386E-5 1.9593383412388555E-4 0.0 20.333205078311078 0.0015674706729910844 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5860 0.0 42.645405 1 GGTATCA 3400 0.0 35.19366 1 TCAACGC 7015 0.0 34.842804 4 CAACGCA 7155 0.0 34.032864 5 ATCAACG 7150 0.0 33.992523 3 TATCAAC 7260 0.0 33.478718 2 AACGCAG 7585 0.0 32.402233 6 ACGCAGA 9230 0.0 25.979042 7 GTACATG 10045 0.0 25.107338 1 CGCAGAG 9635 0.0 24.600618 8 TACATGG 10365 0.0 23.980572 2 ACATGGG 10720 0.0 22.244474 3 TAAGGCG 920 0.0 21.433556 5 GTATAGG 785 0.0 21.105852 1 GCAGAGT 11050 0.0 20.495628 9 CATGGGG 7090 0.0 19.27452 4 GAGTACA 7255 0.0 18.713484 1 AGAGTAC 8835 0.0 18.188044 10-11 AGTACAT 7410 0.0 17.14317 2 CGTATCA 595 0.0 17.01316 92 >>END_MODULE