##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920877_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3914341 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.485936713229634 31.0 28.0 33.0 20.0 34.0 2 28.51431824667294 31.0 28.0 34.0 16.0 34.0 3 28.59161963661316 31.0 28.0 34.0 18.0 34.0 4 32.05505830994285 35.0 32.0 37.0 22.0 37.0 5 32.018999622158624 35.0 32.0 37.0 22.0 37.0 6 32.14104008822941 35.0 32.0 37.0 23.0 37.0 7 31.974891814484227 35.0 32.0 37.0 21.0 37.0 8 31.915441705257667 35.0 32.0 37.0 19.0 37.0 9 33.167129537258 37.0 33.0 39.0 19.0 39.0 10-11 32.97170609305628 37.0 32.0 39.0 18.0 39.0 12-13 32.800186289339635 37.0 32.0 39.0 17.0 39.0 14-15 33.55129471346518 38.0 32.0 40.0 17.0 41.0 16-17 33.43974745685161 38.0 32.0 40.0 17.0 41.0 18-19 33.32367862176545 38.0 32.0 40.0 17.0 41.0 20-21 33.227129675212254 38.0 32.0 40.0 16.0 41.0 22-23 33.00843424218789 38.0 32.0 40.0 12.0 41.0 24-25 32.81638186351164 38.0 31.5 40.0 10.5 41.0 26-27 32.859670759394746 38.0 32.0 40.0 10.0 41.0 28-29 32.70558313647176 38.0 31.0 40.0 10.0 41.0 30-31 32.46757053102936 37.5 31.0 40.0 9.0 41.0 32-33 32.22919387963389 37.0 30.5 40.0 8.0 41.0 34-35 31.909704979714338 37.0 30.0 40.0 5.0 41.0 36-37 31.611169032028634 37.0 30.0 40.0 2.0 41.0 38-39 31.420894091751332 37.0 30.0 40.0 2.0 41.0 40-41 31.226259541516697 37.0 30.0 40.0 2.0 41.0 42-43 31.006077523649573 36.0 29.5 40.0 2.0 41.0 44-45 30.73561577798153 36.0 29.0 39.0 2.0 41.0 46-47 30.502550365438267 36.0 28.0 39.0 2.0 40.0 48-49 30.21371324061956 35.5 28.0 39.0 2.0 40.0 50-51 29.0870486245322 34.0 25.5 38.0 2.0 39.5 52-53 29.539375082549018 34.5 27.5 38.5 2.0 39.5 54-55 30.197551133128158 36.0 28.0 39.0 2.0 40.0 56-57 30.158087274460758 35.5 28.0 39.0 2.0 41.0 58-59 29.926171480716675 35.0 28.0 39.0 2.0 40.5 60-61 29.60696564249257 35.0 27.5 39.0 2.0 40.0 62-63 29.223047506591787 35.0 26.5 39.0 2.0 40.0 64-65 28.810678604648906 34.0 26.0 38.0 2.0 40.0 66-67 28.430581546165755 34.0 26.0 38.0 2.0 40.0 68-69 27.991540210727678 34.0 25.5 37.0 2.0 40.0 70-71 27.667357928192764 34.0 25.0 36.5 2.0 39.0 72-73 27.207174592096088 33.0 24.0 36.0 2.0 39.0 74-75 26.769280959425863 33.0 23.0 35.5 2.0 38.5 76-77 26.35001345053995 33.0 22.0 35.0 2.0 37.5 78-79 25.89160538134005 32.0 20.0 35.0 2.0 37.0 80-81 25.439972782136252 32.0 19.0 35.0 2.0 36.5 82-83 24.966852274750718 32.0 17.5 35.0 2.0 36.0 84-85 24.5653843137325 31.5 11.5 34.5 2.0 35.5 86-87 24.10768223821072 31.0 6.0 34.0 2.0 35.0 88-89 23.575901026507402 31.0 2.0 34.0 2.0 35.0 90-91 23.078789379872628 31.0 2.0 34.0 2.0 35.0 92-93 22.542205316297178 30.0 2.0 34.0 2.0 35.0 94-95 21.906048425520414 30.0 2.0 34.0 2.0 35.0 96-97 21.265599241353783 29.5 2.0 34.0 2.0 35.0 98 20.867298224656462 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 206548.0 3 35432.0 4 25765.0 5 20861.0 6 19292.0 7 19522.0 8 22345.0 9 25265.0 10 27793.0 11 29690.0 12 30655.0 13 30235.0 14 28560.0 15 29795.0 16 31756.0 17 34425.0 18 35551.0 19 35835.0 20 37343.0 21 39868.0 22 43455.0 23 48533.0 24 55302.0 25 63633.0 26 72895.0 27 84453.0 28 97939.0 29 113567.0 30 131656.0 31 154744.0 32 183247.0 33 220793.0 34 274301.0 35 346195.0 36 439638.0 37 487392.0 38 299798.0 39 30262.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.47353964193586 17.738962903537708 12.720520081927061 25.066977372599368 2 16.02997491187983 19.539424225342323 38.95289678607331 25.477704076704537 3 19.523806238576743 23.300082762314247 28.902215009797843 28.273895989311164 4 13.422929227709385 15.496071385773282 36.29131969294694 34.78967969357039 5 14.576337190613128 36.588129295105674 34.25664104402594 14.578892470255267 6 33.94518973442725 34.67376502884583 17.238323489781624 14.142721746945297 7 29.476218071363157 31.22076955782313 20.813914508110937 18.489097862702774 8 26.701667661390545 34.29250094021846 20.084803616979528 18.921027781411475 9 26.768720456393552 15.747478311163999 19.36555859594246 38.118242636499986 10-11 25.700877874462137 25.144730620045625 27.760483820903698 21.39390768458854 12-13 26.307803542047765 22.48053202252358 27.3979336351466 23.813730800282055 14-15 23.4096138573908 24.146849897980807 24.849838965135916 27.593697279492474 16-17 23.719208619657582 27.046122464725812 25.62828250415227 23.60638641146433 18-19 23.664364634706565 26.48369250271062 26.83953310217176 23.012409760411057 20-21 24.367567351970887 25.681368948255617 26.706576767734358 23.244486932039138 22-23 24.053130607586514 25.53195434067633 26.469547281008605 23.945367770728552 24-25 23.804528509774023 25.70375705642391 26.54732605232027 23.944388381481797 26-27 23.72824177943949 25.885198945176835 26.465111361975413 23.921447913408265 28-29 23.765856359395602 26.098274440064372 26.34459128619648 23.79127791434355 30-31 24.020740404476484 25.91402887379619 26.163602842035065 23.90162787969226 32-33 23.714541345981 25.90165794292631 26.161830632485124 24.22197007860757 34-35 24.080381929780014 25.883274140130556 26.163579344548022 23.872764585541407 36-37 24.185196799110788 25.568128557424597 26.198773278394615 24.047901365069997 38-39 23.960555424636674 25.764976991648403 26.24872225739063 24.025745326324298 40-41 24.156390322687063 25.636371268229237 26.311531143268752 23.89570726581495 42-43 24.046839777630375 25.507933432808628 26.18590932009961 24.259317469461383 44-45 23.96200065056134 25.555465484847765 26.298249538501633 24.18428432608925 46-47 24.00600628256027 25.522160383956756 26.220447808459767 24.251385525023206 48-49 23.794185084038517 25.606501670202526 26.2263093000129 24.373003945746056 50-51 23.71047725845703 25.777207056177748 26.329804697278732 24.18251098808649 52-53 23.865832178195078 25.51532084184235 26.344864526087047 24.27398245387553 54-55 23.525367212918688 25.422046865379517 26.62717459010566 24.425411331596134 56-57 23.512545740883 25.58576040321252 26.56500401026505 24.336689845639434 58-59 23.521202547679195 25.335426683675138 26.557702137539017 24.585668631106646 60-61 23.44564482668864 25.340560514492783 26.741724873723815 24.47206978509476 62-63 23.42833168901756 25.284612847005782 26.783877394069894 24.503178069906763 64-65 23.258271547524224 25.247338933741 26.606312335205228 24.88807718352955 66-67 23.255762611900597 25.291135682339327 26.611358941233775 24.841742764526302 68-69 23.41297202398461 25.140853715714673 26.614498956384956 24.83167530391576 70-71 23.221240649201626 25.015101424771824 26.70106282487617 25.062595101150375 72-73 23.197558274566678 25.01491655574869 26.75323696310976 25.03428820657487 74-75 23.20144906191289 25.092825561776184 26.716431704266675 24.989293672044248 76-77 23.197084603262862 24.90100125435583 26.83742107722838 25.064493065152927 78-79 23.106502675400733 24.950475124765514 26.87684055970319 25.066181640130562 80-81 23.234261626072687 24.888912420515062 26.874572857183697 25.002253096228554 82-83 23.185561406837284 24.82922176813541 26.918928412103437 25.06628841292387 84-85 23.154157178807857 24.7789349728661 26.96973461172176 25.097173236604288 86-87 23.214331491032887 24.71167058027337 26.9904150815705 25.083582847123242 88-89 23.164944592144867 24.523113139379234 27.023740508201442 25.288201760274454 90-91 23.13192234359952 24.58644141155041 27.075831296608357 25.205804948241717 92-93 23.27851725466242 24.335685401814015 27.1678971815558 25.217900161967766 94-95 23.25397565080141 24.20970611714419 27.196596183718803 25.339722048335595 96-97 23.41252768452031 24.04115026073062 27.19722403552234 25.349098019226734 98 23.392133868728944 23.94015205549764 27.14703911221823 25.52067496355519 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 50.0 1 51.0 2 80.5 3 134.5 4 149.0 5 182.5 6 301.5 7 530.5 8 812.0 9 964.0 10 1018.5 11 1123.0 12 1294.0 13 1485.5 14 1674.5 15 1818.5 16 1945.5 17 2043.0 18 2035.5 19 2004.5 20 2005.5 21 2050.0 22 2160.0 23 2432.5 24 2867.0 25 3473.0 26 4393.5 27 5791.0 28 7898.0 29 11114.5 30 16283.5 31 23862.5 32 32164.5 33 40859.0 34 51039.5 35 62496.5 36 75527.0 37 88584.0 38 99216.5 39 109349.5 40 119879.5 41 129201.0 42 138593.0 43 148412.0 44 156818.5 45 164752.0 46 172128.5 47 177016.5 48 179867.0 49 179692.0 50 178491.0 51 177697.0 52 174604.5 53 170213.0 54 163106.0 55 154335.5 56 141846.5 57 126640.0 58 114243.5 59 99211.5 60 82042.5 61 66832.5 62 53872.0 63 41446.5 64 30385.0 65 22924.0 66 17322.5 67 12919.5 68 9592.0 69 7098.0 70 5226.0 71 3760.0 72 2735.5 73 2060.0 74 1615.5 75 1154.5 76 730.5 77 453.0 78 264.0 79 137.5 80 84.0 81 52.5 82 29.0 83 17.0 84 14.0 85 11.5 86 8.0 87 7.5 88 7.5 89 5.5 90 7.5 91 7.0 92 4.0 93 4.5 94 3.5 95 2.5 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.38992514959733965 2 0.023886523938512257 3 0.018496089124580613 4 0.015839192344254117 5 0.022353698872939278 6 0.024269730204905502 7 0.0156603627532706 8 0.009120309140159225 9 0.0 10-11 0.0 12-13 0.0056459056581938056 14-15 0.0032317061799163643 16-17 0.005569264404915157 18-19 0.03815457059055407 20-21 0.08006456259176194 22-23 0.09968472343109608 24-25 0.0656176863487366 26-27 0.07598980262578042 28-29 0.05892435022906794 30-31 0.05298465309997265 32-33 0.02009278190121913 34-35 0.3427013640354788 36-37 0.5249414907898928 38-39 0.4802596401284405 40-41 0.490235776596878 42-43 0.4400740763260022 44-45 0.41307080808749164 46-47 0.41103981487560737 48-49 0.4013957905047108 50-51 0.3978447457694667 52-53 0.4593876721522218 54-55 0.4606650263735326 56-57 0.4302895429907614 58-59 0.4159959492542934 60-61 0.4300212986042861 62-63 0.4103628171383127 64-65 0.4602945936493525 66-67 0.4819074270739315 68-69 0.42386445125756805 70-71 0.3800001072977546 72-73 0.3656298723080079 74-75 0.3477085925830172 76-77 0.3457542406244116 78-79 0.34548599623793635 80-81 0.3615551123420264 82-83 0.356662845674406 84-85 0.3566756192166191 86-87 0.34286742008424914 88-89 0.38625914298217756 90-91 0.3650422893662049 92-93 0.35442747578711203 94-95 0.3609930764846496 96-97 0.3614146033776822 98 0.35569205646620977 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3914341.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.232859043570485 #Duplication Level Percentage of deduplicated Percentage of total 1 75.70973159999747 44.08794128489207 2 12.472360952712341 14.526024745996605 3 4.915690075045079 8.587640617259359 4 2.410616518031739 5.615083676105797 5 1.3267118518659755 3.862911213057286 6 0.812418824342966 2.8385682529384315 7 0.5380855480644404 2.1933981911673253 8 0.3642436791052872 1.6968760658279767 9 0.2572573405840353 1.3482747406938542 >10 1.127750605032528 11.073456255864784 >50 0.04680745789249369 1.8493448000404575 >100 0.016957442256031418 1.6479738254005811 >500 0.001015045750644974 0.3875238330051633 >1k 3.530593188494049E-4 0.2849824977502039 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5547084426216314E-5 2 0.0 0.0 0.0 0.0 2.5547084426216314E-5 3 0.0 0.0 0.0 5.109416885243263E-5 5.109416885243263E-5 4 0.0 0.0 0.0 5.109416885243263E-5 5.109416885243263E-5 5 0.0 0.0 0.0 5.109416885243263E-5 5.109416885243263E-5 6 0.0 0.0 0.0 5.109416885243263E-5 5.109416885243263E-5 7 0.0 0.0 0.0 1.532825065572979E-4 5.109416885243263E-5 8 0.0 0.0 0.0 3.065650131145958E-4 5.109416885243263E-5 9 0.0 0.0 0.0 3.5765918196702844E-4 5.109416885243263E-5 10-11 0.0 0.0 0.0 3.5765918196702844E-4 5.109416885243263E-5 12-13 0.0 0.0 0.0 4.7262106188500184E-4 1.7882959098351422E-4 14-15 0.0 0.0 0.0 4.8539460409811E-4 2.2992375983594683E-4 16-17 0.0 0.0 0.0 5.237152307374345E-4 2.8101792868837945E-4 18-19 0.0 0.0 0.0 5.748093995898671E-4 3.4488563975392027E-4 20-21 0.0 0.0 0.0 6.259035684422998E-4 3.5765918196702844E-4 22-23 0.0 0.0 0.0 7.153183639340569E-4 3.5765918196702844E-4 24-25 0.0 0.0 0.0 9.196950393437874E-4 3.5765918196702844E-4 26-27 0.0 0.0 0.0 0.0016605604877040605 4.215268930325692E-4 28-29 0.0 0.0 0.0 0.006118526720078808 4.343004352456774E-4 30-31 0.0 0.0 0.0 0.027399248047117 4.4707397745878555E-4 32-33 0.0 0.0 0.0 0.08057550428028626 4.5984751967189367E-4 34-35 0.0 0.0 0.0 0.1504978743548403 5.109416885243263E-4 36-37 0.0 0.0 0.0 0.2656641309482235 5.109416885243263E-4 38-39 0.0 0.0 0.0 0.4600518963473035 5.109416885243263E-4 40-41 0.0 0.0 0.0 0.6824009456508772 5.109416885243263E-4 42-43 0.0 0.0 0.0 0.9239741759851786 5.237152307374345E-4 44-45 0.0 0.0 0.0 1.214648902586668 5.364887729505427E-4 46-47 0.0 0.0 0.0 1.5585126589635394 5.492623151636508E-4 48-49 0.0 0.0 0.0 1.9186243610354847 5.620358573767589E-4 50-51 0.0 0.0 0.0 2.3102867123738067 6.386771106554079E-4 52-53 0.0 0.0 0.0 2.713636854837123 7.919596172127058E-4 54-55 0.0 0.0 0.0 3.1684260517926264 7.919596172127058E-4 56-57 0.0 0.0 0.0 3.694466067212846 7.919596172127058E-4 58-59 0.0 0.0 0.0 4.248697290297397 7.919596172127058E-4 60-61 0.0 0.0 0.0 4.828335088843819 8.430537860651384E-4 62-63 0.0 0.0 0.0 5.425242716462362 8.686008704913548E-4 64-65 2.5547084426216314E-5 0.0 0.0 6.071571178903422 9.069214971306793E-4 66-67 2.5547084426216314E-5 0.0 0.0 6.800991533440751 9.196950393437873E-4 68-69 2.5547084426216314E-5 0.0 0.0 7.5857213257608365 9.196950393437873E-4 70-71 2.5547084426216314E-5 0.0 0.0 8.400864922090335 9.580156659831119E-4 72-73 2.5547084426216314E-5 0.0 0.0 9.238758197101376 9.7078920819622E-4 74-75 2.5547084426216314E-5 0.0 0.0 10.101508785259128 9.7078920819622E-4 76-77 2.5547084426216314E-5 0.0 0.0 11.04641879693159 9.963362926224363E-4 78-79 2.5547084426216314E-5 0.0 0.0 12.061608837860575 0.0010218833770486526 80-81 2.5547084426216314E-5 0.0 0.0 13.100442705426023 0.0010218833770486526 82-83 2.5547084426216314E-5 0.0 0.0 14.151692456022609 0.0010729775459010853 84-85 2.5547084426216314E-5 0.0 0.0 15.224516719417139 0.0010729775459010853 86 2.5547084426216314E-5 0.0 0.0 16.048908360308925 0.0010729775459010853 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5170 0.0 40.061466 1 GGTATCA 2915 0.0 38.210407 1 TCAACGC 6430 0.0 31.669977 4 ATCAACG 6505 0.0 31.44625 3 CAACGCA 6530 0.0 31.184988 5 TATCAAC 6785 0.0 30.081715 2 AACGCAG 7020 0.0 29.459572 6 GTACATG 10610 0.0 26.591934 1 TACATGG 11130 0.0 24.684486 2 ACGCAGA 8275 0.0 24.65542 7 ACATGGG 11570 0.0 23.26945 3 CGCAGAG 8780 0.0 22.922829 8 TCGCGTA 265 1.2369128E-9 20.759768 9 CATGGGG 8420 0.0 20.64443 4 TAAGGCG 995 0.0 19.35985 5 GAGTACA 7990 0.0 18.951954 1 TAAGGTG 1560 0.0 18.22816 5 GCAGAGT 10620 0.0 17.957916 9 TATACCG 235 3.5355733E-6 17.565092 5 GTGTAGC 2270 0.0 17.43723 1 >>END_MODULE