##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920875_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4422198 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.19260919569861 31.0 30.0 34.0 26.0 34.0 2 30.202101081860196 31.0 30.0 34.0 26.0 34.0 3 30.339800027045374 31.0 30.0 34.0 26.0 34.0 4 33.98633032713596 35.0 35.0 37.0 30.0 37.0 5 33.49578377087593 35.0 35.0 37.0 28.0 37.0 6 33.44079618325548 35.0 35.0 37.0 28.0 37.0 7 33.25268859512848 35.0 33.0 37.0 27.0 37.0 8 33.184847896905566 35.0 33.0 37.0 27.0 37.0 9 34.50922098015512 38.0 34.0 39.0 27.0 39.0 10-11 34.315884883490064 37.5 34.0 39.0 27.0 39.0 12-13 34.12854241261924 37.0 34.0 39.0 26.0 39.0 14-15 35.02292231148402 38.0 34.0 40.0 25.5 41.0 16-17 34.90113513687085 38.0 34.0 40.0 25.0 41.0 18-19 34.817821590078054 38.0 33.5 40.0 25.0 41.0 20-21 34.70543878858432 38.0 34.0 40.0 25.0 41.0 22-23 34.556347092554425 38.0 33.5 40.0 24.0 41.0 24-25 34.378967427510034 38.0 33.0 40.0 23.5 41.0 26-27 34.19007063908039 38.0 33.0 40.0 22.5 41.0 28-29 34.131480431224475 38.0 33.0 40.0 22.5 41.0 30-31 34.114722588179 38.0 33.0 40.0 22.0 41.0 32-33 33.96233818567147 38.0 33.0 40.0 21.0 41.0 34-35 33.790757559928345 38.0 33.0 40.0 19.5 41.0 36-37 33.595251614694774 38.0 32.5 40.0 18.5 41.0 38-39 33.412281403953415 38.0 32.0 40.0 18.0 41.0 40-41 33.17909057893835 38.0 32.0 40.0 16.0 41.0 42-43 33.19587024371138 38.0 32.0 40.0 15.5 41.0 44-45 33.0447652954481 38.0 32.0 40.0 15.0 41.0 46-47 32.792079526968266 37.5 31.5 40.0 12.5 41.0 48-49 32.529770489697654 37.0 31.0 40.0 9.0 41.0 50-51 32.27826343370423 37.0 31.0 40.0 8.0 41.0 52-53 32.00956153478428 37.0 31.0 40.0 7.5 41.0 54-55 31.726560072615474 36.0 30.0 39.5 6.5 41.0 56-57 31.404588057793887 36.0 30.0 39.0 2.0 41.0 58-59 31.075943116974862 35.5 29.0 39.0 2.0 40.0 60-61 30.748931639876822 35.0 29.0 39.0 2.0 40.0 62-63 30.426809812676865 35.0 28.5 38.5 2.0 40.0 64-65 30.031654168357 35.0 28.0 38.0 2.0 40.0 66-67 29.615115718473028 34.0 28.0 38.0 2.0 40.0 68-69 29.184651049093688 34.0 28.0 37.0 2.0 39.5 70-71 28.769561539306924 34.0 26.5 36.5 2.0 39.0 72-73 28.34125767322042 34.0 26.0 36.0 2.0 39.0 74-75 27.901461558256777 33.0 26.0 35.5 2.0 38.5 76-77 26.445208468729803 31.5 24.5 34.0 2.0 36.0 78-79 27.293836345636265 33.0 26.0 35.0 2.0 37.0 80-81 27.32696545925804 33.0 26.0 35.0 2.0 36.5 82-83 26.99494708287598 33.0 25.0 35.0 2.0 36.0 84-85 26.676727274536326 33.0 25.0 35.0 2.0 36.0 86-87 26.140777278629315 32.5 24.0 35.0 2.0 35.0 88-89 25.77030393030796 32.0 22.5 35.0 2.0 35.0 90-91 25.406889854321314 32.0 20.0 34.5 2.0 35.0 92-93 25.09886181034861 32.0 19.5 34.0 2.0 35.0 94-95 24.710087608017552 32.0 17.5 34.0 2.0 35.0 96-97 24.172821411433862 31.5 4.5 34.0 2.0 35.0 98-99 23.573201606983673 31.0 2.0 34.0 2.0 35.0 100-101 21.40175157240811 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 110317.0 3 48733.0 4 25813.0 5 18126.0 6 15639.0 7 15728.0 8 17625.0 9 20222.0 10 23147.0 11 25751.0 12 28412.0 13 30828.0 14 33778.0 15 35778.0 16 37516.0 17 38884.0 18 37177.0 19 35939.0 20 35914.0 21 37679.0 22 40765.0 23 46164.0 24 54683.0 25 65228.0 26 76768.0 27 91504.0 28 107370.0 29 126705.0 30 149415.0 31 177062.0 32 211269.0 33 258157.0 34 324870.0 35 421446.0 36 558270.0 37 646685.0 38 367072.0 39 25759.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.87268692374877 19.572768373486127 14.018938479959854 24.53560622280525 2 16.018301306273486 20.960730387920215 37.96777077824195 25.053197527564347 3 18.7876147964405 24.780765287741108 29.72862276386248 26.70299715195592 4 13.923246474041045 16.771831408931632 36.08695337515498 33.21796874187235 5 14.487060585357755 37.08133446497946 34.05856834100089 14.373036608661888 6 33.148158460793866 35.52349027016969 17.13356541313691 14.19478585589954 7 28.84732095625267 31.84632184032986 21.28411306042885 18.022244142988615 8 26.62502915078939 34.43578788640362 20.21051964253774 18.728663320269252 9 26.796537669029586 15.496587421411279 19.724045255871495 37.982829653687645 10-11 25.68745340512463 25.376907687302623 27.74591397043692 21.18972493713583 12-13 26.223228609035477 22.754171154883203 27.651149323020736 23.371450913060585 14-15 23.523884979176437 24.310834648425292 25.047105026124683 27.11817534627359 16-17 23.529572825648653 27.19333657070265 25.870785970212886 23.40630463343581 18-19 23.558013770484607 26.505585921140906 27.182636067752313 22.75376424062217 20-21 24.370999877278198 25.70652976116754 26.82273260163995 23.09973775991431 22-23 24.13822174141334 25.48838061957958 26.70360621752277 23.669791421484312 24-25 23.84710624311875 25.71803716972824 26.678595299412756 23.75626128774025 26-27 23.643018805419374 25.860110452931238 26.666354397050362 23.830516344599026 28-29 23.754352515772215 26.02647207331772 26.53141140956359 23.687764001346476 30-31 24.01329528111388 25.85299983544884 26.282597103560356 23.85110777987692 32-33 23.806431816405603 25.881401021559842 26.226644862110003 24.08552229992455 34-35 24.150491681476577 25.88651660170662 26.287506580349817 23.675485136466985 36-37 24.31084760426474 25.5939336878801 26.254646004563302 23.84057270329186 38-39 24.077277343847197 25.679657439892512 26.284724814118615 23.95834040214168 40-41 24.21063429050558 25.54250479460715 26.410374491672115 23.83648642321515 42-43 24.097508307732877 25.525340352157183 26.158092931040077 24.21905840906986 44-45 23.890360391130574 25.53183307962172 26.374159415339864 24.203647113907845 46-47 24.007718199750265 25.547116759260934 26.245430608588645 24.199734432400152 48-49 23.835417641710336 25.671034523076013 26.12678675397781 24.36676108123584 50-51 23.78827973724382 25.72965117035151 26.223984162889018 24.25808492951565 52-53 23.94897930569087 25.47881088004863 26.20814800542392 24.364061808836578 54-55 23.570367316374888 25.47353630199033 26.426596487760285 24.529499893874494 56-57 23.536970278638194 25.513215713083596 26.314012461863722 24.635801546414484 58-59 23.54578433012067 25.39172323851605 26.2773116835554 24.785180747807882 60-61 23.4425138633835 25.356516892892145 26.481703183698286 24.719266060026072 62-63 23.372125118688345 25.38123029705642 26.42643403280067 24.820210551454572 64-65 23.167322117917905 25.260341166333856 26.367740943352274 25.204595772395965 66-67 23.18055722868569 25.383105325757022 26.256077704122347 25.18025974143494 68-69 23.277097176784693 25.263379230330134 26.235923419600134 25.223600173285043 70-71 23.04123851829535 25.12477046768894 26.2515186707013 25.582472343314404 72-73 22.978220248096033 25.348744005763564 26.147262890782702 25.525772855357705 74-75 22.982573096251908 25.37549202256624 26.08406788974983 25.55786699143202 76-77 22.999825101127932 25.085576329188918 26.272270276905836 25.64232829277731 78-79 22.882571893938998 25.206823296014804 26.22113158680287 25.689473223243333 80-81 22.8811692459122 25.26919914019118 26.10052182000105 25.749109793895574 82-83 22.73735579433109 25.28025832718088 26.17120937869875 25.81117649978928 84-85 22.653522455698898 25.229141284738137 26.049689514039777 26.067646745523188 86-87 22.5885943317993 25.298003109637097 26.02604136848973 26.087361190073878 88-89 22.47805897254849 25.093642887520907 26.106733663722082 26.321564476208533 90-91 22.344162674907416 25.16720268644368 26.033329323907665 26.45530531474124 92-93 22.464815540788557 25.00411031413693 26.027473577970305 26.503600567104215 94-95 22.21486783241911 24.83159213694874 26.186102645522507 26.767437385109645 96-97 22.265765675614954 24.757930171949717 26.16943457621569 26.806869576219643 98-99 22.10688005137877 24.730668511960488 26.091131734983243 27.0713197016775 100-101 22.176151859574215 24.702723666773707 26.140665493738098 26.980458979913973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 127.0 1 105.5 2 116.5 3 164.0 4 160.5 5 175.5 6 280.5 7 601.5 8 892.5 9 912.0 10 791.0 11 686.0 12 703.0 13 725.0 14 780.5 15 890.5 16 968.0 17 1064.5 18 1224.5 19 1378.5 20 1608.0 21 1857.0 22 2171.5 23 2585.0 24 3163.0 25 3956.5 26 5095.5 27 6869.0 28 9373.5 29 13119.5 30 18554.5 31 26182.5 32 35896.5 33 45028.5 34 52939.5 35 62518.5 36 74834.5 37 87009.5 38 97796.5 39 108078.0 40 118261.5 41 127775.5 42 136735.0 43 146233.0 44 155882.0 45 165450.0 46 175318.5 47 184335.0 48 191372.5 49 195826.5 50 196428.0 51 196054.0 52 194456.0 53 192745.5 54 189459.0 55 179043.0 56 164672.0 57 147625.5 58 132307.5 59 117572.0 60 99040.5 61 81996.5 62 67095.0 63 51277.5 64 37227.0 65 27713.5 66 20910.5 67 15528.5 68 11262.0 69 8295.5 70 6270.0 71 4719.5 72 3495.0 73 2729.5 74 2048.5 75 1445.5 76 989.0 77 589.5 78 321.5 79 157.0 80 91.5 81 52.5 82 29.5 83 21.5 84 10.5 85 3.5 86 1.0 87 0.5 88 0.5 89 0.5 90 1.0 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19069702442088754 2 0.0 3 0.01282167826949404 4 0.012753838701930578 5 0.007258833729290276 6 0.10745787502052147 7 0.14232741274814018 8 0.12455344604651351 9 0.1431188743697139 10-11 0.1161187264794566 12-13 0.11478454831737521 14-15 0.11773556950638574 16-17 0.06720639826620155 18-19 0.08015244907622861 20-21 0.03687080497074079 22-23 0.0840758374003154 24-25 0.05834202810457605 26-27 0.06648277621219131 28-29 0.03993489210569043 30-31 0.024433550917439695 32-33 0.031873290160232534 34-35 0.020137044971753865 36-37 0.023981287133683294 38-39 0.030934842808938 40-41 0.02453531026878489 42-43 0.012765145296524488 44-45 0.026412204971373962 46-47 0.03342229361959822 48-49 0.008762610810280317 50-51 0.01547872799906291 52-53 0.006919635891472973 54-55 0.012358107891143725 56-57 0.00513319394563518 58-59 0.0037650959997720594 60-61 0.023042839782388757 62-63 0.009689751566980945 64-65 0.0069648622698486136 66-67 0.04161957470018303 68-69 0.09144773707554478 70-71 0.02214961880946986 72-73 0.04555426961886374 74-75 0.08657459480556953 76-77 0.250497603228078 78-79 0.08075169858970584 80-81 0.016959891890865133 82-83 0.01172493859388476 84-85 0.013138262918123523 86-87 0.26492481792990724 88-89 0.6236039182325169 90-91 0.2658745718757957 92-93 0.35277705792458863 94-95 0.001062819891827548 96-97 0.004036454270025901 98-99 0.003120620107919184 100-101 0.0049296752429447985 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4422198.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.25556082625481 #Duplication Level Percentage of deduplicated Percentage of total 1 72.05191773338723 35.48957616565162 2 13.053383318290077 12.859034320449133 3 5.575037695714098 8.238048249897277 4 2.8253816595221184 5.566630327519058 5 1.6749421719618605 4.125010801576337 6 1.0849528475943693 3.2063976586981693 7 0.7325693952852801 2.525818148624877 8 0.5246186713580858 2.067230950213374 9 0.3749968103813444 1.6623610383050866 >10 1.95829828733812 16.986692560773918 >50 0.1082114579203097 3.6090782619939907 >100 0.03379939271905526 2.719379876933873 >500 0.0012911132862138148 0.461128282135854 >1k 5.994452418445909E-4 0.4836133572274951 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.2613189187820173E-5 2 0.0 0.0 0.0 0.0 2.2613189187820173E-5 3 0.0 4.5226378375640346E-5 0.0 0.0 2.2613189187820173E-5 4 0.0 4.5226378375640346E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 5 0.0 6.783956756346053E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 6 0.0 6.783956756346053E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 7 0.0 6.783956756346053E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 8 0.0 6.783956756346053E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 9 0.0 6.783956756346053E-5 0.0 2.2613189187820173E-5 2.2613189187820173E-5 10-11 0.0 1.1306594593910087E-4 0.0 2.2613189187820173E-5 4.5226378375640346E-5 12-13 0.0 1.3567913512692106E-4 0.0 2.2613189187820173E-5 1.6959891890865132E-4 14-15 0.0 1.4698572972083115E-4 0.0 2.2613189187820173E-5 2.2613189187820174E-4 16-17 0.0 1.695989189086513E-4 0.0 2.2613189187820173E-5 2.9397145944166225E-4 18-19 0.0 1.8090551350256139E-4 0.0 4.522637837564035E-5 3.3919783781730263E-4 20-21 0.0 2.4874508106602193E-4 0.0 1.3567913512692103E-4 4.0703740538076315E-4 22-23 0.0 2.4874508106602193E-4 0.0 2.7135827025384206E-4 4.522637837564035E-4 24-25 0.0 2.826648648477522E-4 0.0 0.001051513297233638 4.7487697294422367E-4 26-27 0.0 2.9397145944166225E-4 0.0 0.002035187026903816 5.540231351015943E-4 28-29 0.0 3.052780540355723E-4 0.0 0.006851796323909513 5.653297296955044E-4 30-31 0.0 3.957308107868531E-4 0.0 0.028990108538785465 5.879429188833246E-4 32-33 0.0 4.635703783503136E-4 0.0 0.08161099977884301 6.44475891852875E-4 34-35 0.0 4.7487697294422367E-4 0.0 0.15239028193672016 6.55782486446785E-4 36-37 0.0 4.8618356753813373E-4 0.0 0.27475024863201514 6.55782486446785E-4 38-39 0.0 5.879429188833246E-4 0.0 0.4723329891605939 6.55782486446785E-4 40-41 0.0 6.105561080711448E-4 0.0 0.6998555921738465 6.55782486446785E-4 42-43 0.0 6.783956756346053E-4 0.0 0.9432413474023551 6.783956756346052E-4 44-45 0.0 7.688484323858859E-4 0.0 1.2419728831680534 7.236220540102456E-4 46-47 0.0 7.80155026979796E-4 0.0 1.5957336148223122 7.80155026979796E-4 48-49 0.0 8.027682161676162E-4 0.0 1.9670534878809134 8.366879999493464E-4 50-51 0.0 8.140748107615263E-4 0.0 2.3673521628837064 8.593011891371667E-4 52-53 0.0 8.366879999493464E-4 0.0 2.7688606435080474 0.001028900108045818 54-55 0.0 8.593011891371667E-4 0.0 3.2192814523456432 0.0011080462702031885 56-57 0.0 8.819143783249868E-4 0.0 3.7410694862600002 0.0011306594593910087 58-59 0.0 9.271407567006272E-4 0.0 4.297557458983066 0.001153272648578829 60-61 0.0 9.384473512945373E-4 0.0 4.894918771163118 0.001153272648578829 62-63 0.0 9.497539458884473E-4 0.0 5.496395683775353 0.0012437254053301095 64-65 0.0 0.001017593513451908 0.0 6.141968315303838 0.00127764518911184 66-67 2.2613189187820173E-5 0.001040206702639728 0.0 6.874364286718958 0.0013002583782996601 68-69 4.5226378375640346E-5 0.001040206702639728 0.0 7.675696565373147 0.00131156497289357 70-71 4.5226378375640346E-5 0.001051513297233638 0.0 8.522549193862417 0.00131156497289357 72-73 4.5226378375640346E-5 0.0010854330810153685 0.0 9.37677372202692 0.0013794045404570306 74-75 4.5226378375640346E-5 0.0010854330810153685 0.0 10.26118685775716 0.001424630918832671 76-77 4.5226378375640346E-5 0.0010854330810153685 0.0 11.220698394780154 0.0014698572972083113 78-79 4.5226378375640346E-5 0.0010854330810153685 0.0 12.266060904554703 0.0015037770809900415 80-81 4.5226378375640346E-5 0.0010854330810153685 0.0 13.343726355084055 0.0015716166485535022 82-83 4.5226378375640346E-5 0.0010854330810153685 0.0 14.448007529287473 0.0016507628107108728 84-85 4.5226378375640346E-5 0.0010854330810153685 0.0 15.55102236489637 0.0016733759998986929 86-87 4.5226378375640346E-5 0.0010854330810153685 0.0 16.69391555963799 0.0017186023782743334 88-89 4.5226378375640346E-5 0.0010854330810153685 0.0 17.897536473943504 0.0017412155674621534 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4325 0.0 50.255302 1 GTATCAA 7485 0.0 43.20847 1 TCAACGC 10380 0.0 30.182245 4 TATCAAC 10495 0.0 30.030397 2 ATCAACG 10555 0.0 29.7268 3 CAACGCA 10805 0.0 28.859676 5 AACGCAG 11175 0.0 28.116505 6 GTACATG 14515 0.0 26.213482 1 TACATGG 15095 0.0 24.306467 2 ACGCAGA 13125 0.0 23.469091 7 ACATGGG 15350 0.0 23.038427 3 CGCAGAG 13440 0.0 22.777002 8 CATGGGG 11330 0.0 20.361572 4 GAGTACA 11330 0.0 19.519775 1 GCAGAGT 14890 0.0 19.284204 9 AGAGTAC 12720 0.0 18.524485 10-11 AGTACAT 11400 0.0 17.737001 2 GTGGTAT 2260 0.0 17.467127 1 ATGGGGG 5695 0.0 16.918161 5 GTATTAA 2650 0.0 16.870726 1 >>END_MODULE