##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920874_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3070620 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.104244419693742 31.0 30.0 33.0 25.0 34.0 2 29.15287010440888 31.0 30.0 34.0 23.0 34.0 3 29.227866033569768 31.0 30.0 34.0 23.0 34.0 4 32.758302883456764 35.0 33.0 37.0 26.0 37.0 5 32.734863968840166 35.0 33.0 37.0 26.0 37.0 6 32.854133367202714 35.0 33.0 37.0 26.0 37.0 7 32.698800893630604 35.0 33.0 37.0 25.0 37.0 8 32.651298760510905 35.0 33.0 37.0 25.0 37.0 9 33.973816362819235 37.0 34.0 39.0 25.0 39.0 10-11 33.800168044238625 37.0 33.0 39.0 25.0 39.0 12-13 33.63945962053266 37.0 33.0 39.0 24.0 39.0 14-15 34.46145957493927 38.0 33.0 40.0 24.0 41.0 16-17 34.36212149337919 38.0 33.0 40.0 23.0 41.0 18-19 34.254875236922835 38.0 33.0 40.0 22.0 41.0 20-21 34.16991454494532 38.0 33.0 40.0 21.5 41.0 22-23 33.95828920543734 38.0 33.0 40.0 19.0 41.0 24-25 33.77130546925377 38.0 33.0 40.0 18.0 41.0 26-27 33.82220170519309 38.0 33.0 40.0 18.0 41.0 28-29 33.678233874592095 38.0 33.0 40.0 17.5 41.0 30-31 33.44111970872332 38.0 32.0 40.0 16.5 41.0 32-33 33.215178042219485 38.0 32.0 40.0 16.0 41.0 34-35 32.90235229367359 38.0 31.5 40.0 12.0 41.0 36-37 32.61622815587731 38.0 31.0 40.0 9.0 41.0 38-39 32.425322410457824 37.0 31.0 40.0 9.0 41.0 40-41 32.239722759572985 37.0 30.5 40.0 8.5 41.0 42-43 32.01967762210889 37.0 30.0 40.0 8.0 41.0 44-45 31.757640476516144 37.0 30.0 40.0 4.5 41.0 46-47 31.52159140499313 37.0 30.0 40.0 2.0 41.0 48-49 31.23406787554305 36.0 30.0 39.0 2.0 40.5 50-51 30.084359021956477 34.5 28.0 38.0 2.0 39.5 52-53 30.548039158215605 35.5 29.0 38.5 2.0 39.5 54-55 31.225675596459347 36.0 30.0 39.0 2.0 40.5 56-57 31.19135598022549 36.0 30.0 39.5 2.0 41.0 58-59 30.959894255883178 36.0 29.5 39.0 2.0 41.0 60-61 30.649695826901407 35.5 29.0 39.0 2.0 40.5 62-63 30.265090437761756 35.0 28.5 39.0 2.0 40.0 64-65 29.855608313630473 35.0 28.0 38.5 2.0 40.0 66-67 29.476537148849417 34.5 28.0 38.0 2.0 40.0 68-69 29.029562433645324 34.0 27.0 37.5 2.0 40.0 70-71 28.702286346079944 34.0 26.5 37.0 2.0 39.5 72-73 28.233029974402562 34.0 26.0 36.0 2.0 39.0 74-75 27.793556187349786 34.0 26.0 36.0 2.0 39.0 76-77 27.37583712735539 33.0 25.5 35.5 2.0 38.0 78-79 26.916262513759435 33.0 25.0 35.0 2.0 37.0 80-81 26.467913320436914 33.0 24.0 35.0 2.0 37.0 82-83 25.99779181403104 32.0 22.5 35.0 2.0 36.0 84-85 25.597110355563373 32.0 20.5 35.0 2.0 36.0 86-87 25.152493633207627 32.0 19.0 35.0 2.0 35.0 88-89 24.62726468921586 31.5 16.0 34.0 2.0 35.0 90-91 24.138921129934673 31.0 7.5 34.0 2.0 35.0 92-93 23.606494128221662 31.0 2.0 34.0 2.0 35.0 94-95 22.97726859722141 31.0 2.0 34.0 2.0 35.0 96-97 22.33887439670164 30.5 2.0 34.0 2.0 35.0 98 21.947528837824283 30.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 127558.0 3 22293.0 4 16473.0 5 13526.0 6 12871.0 7 12708.0 8 14497.0 9 16713.0 10 18432.0 11 19888.0 12 21147.0 13 21327.0 14 20117.0 15 20837.0 16 22769.0 17 24729.0 18 25353.0 19 25240.0 20 26238.0 21 28307.0 22 30452.0 23 34274.0 24 39700.0 25 45736.0 26 53690.0 27 62311.0 28 72538.0 29 84584.0 30 100210.0 31 119339.0 32 143344.0 33 176999.0 34 223722.0 35 285991.0 36 368498.0 37 421179.0 38 267281.0 39 29748.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.438299153420786 17.983344300062793 12.599023356355293 24.979333190161128 2 16.202353683102316 19.35749298351223 38.93349385910736 25.50665947427809 3 19.691709263151655 23.19079349165448 28.700503470746284 28.41699377444758 4 13.548281396978929 14.981199725878195 36.044509616411865 35.42600926073101 5 14.676401379033582 36.61012333646908 34.01570566023969 14.697769624257647 6 34.34646307435423 34.28493064653676 16.930570964902735 14.438035314206271 7 29.794559811972427 31.142750867373593 20.542846236126255 18.519843084527725 8 26.96995199902031 34.33490079645539 19.81481614172177 18.88033106280253 9 26.696921142961354 15.742944421647746 19.489158541271795 38.0709758941191 10-11 25.899598745399544 25.195750433381676 27.32696567043974 21.577685150779043 12-13 26.302708112580543 22.407427943602578 27.414040146108427 23.875823797708453 14-15 23.348289496695845 24.11397189213976 24.842120038599212 27.695618572565184 16-17 23.649762909461362 27.25353258307451 25.51343019096703 23.583274316497103 18-19 23.648067851573707 26.445521593172362 26.925140009516134 22.9812705457378 20-21 24.1577006028617 25.81022119051945 26.818668098520916 23.213410108097936 22-23 23.94532858233946 25.406973086430295 26.687912706192147 23.959785625038098 24-25 23.68086218164452 25.76985450261114 26.736247061236906 23.813036254507434 26-27 23.54059689507146 25.99952353204198 26.67472621016995 23.78515336271661 28-29 23.55998039030718 26.125353771990234 26.589967937924147 23.724697899778437 30-31 23.802321360728456 25.963959020704046 26.39884759578008 23.83487202278742 32-33 23.54938844644224 26.012898812722916 26.383511669191055 24.054201071643785 34-35 23.896971972290864 25.975467463397408 26.466758612216868 23.660801952094864 36-37 23.97735094642722 25.802239899032053 26.411016268185637 23.809392886355088 38-39 23.70984909914073 25.92437797500793 26.51836945478315 23.847403471068187 40-41 23.938859625214842 25.823795418725386 26.54417367866032 23.693171277399454 42-43 23.796250269800055 25.784774774185532 26.428403241525007 23.99057171448941 44-45 23.662339394739924 25.82374665940405 26.50558133725846 24.00833260859757 46-47 23.716910564507206 25.791651048257492 26.450885504541503 24.0405528826938 48-49 23.638545039662755 25.85243460508056 26.437936327096374 24.07108402816031 50-51 23.6513324410021 25.966185015929078 26.430531784846075 23.951950758222747 52-53 23.75810196599476 25.844320900246977 26.480539172129582 23.917037961628683 54-55 23.382799625535544 25.754571390627788 26.708265105656675 24.15436387817999 56-57 23.444195105601132 25.821808564993642 26.614918637874162 24.119077691531064 58-59 23.35714062683657 25.621375591728867 26.694510230695172 24.326973550739385 60-61 23.390867329654334 25.62081517921726 26.85704998829329 24.131267502835115 62-63 23.29585662720107 25.62970887044978 26.882089205534914 24.19234529681424 64-65 23.194760276123386 25.553908433381835 26.8054523378377 24.445878952657086 66-67 23.151228653677975 25.547846809334818 26.740888522608934 24.56003601437827 68-69 23.273861168618147 25.482114944422946 26.680599145642468 24.56342474131644 70-71 23.189634533469842 25.20603709819886 26.864171827365336 24.740156540965966 72-73 23.231885850626007 25.287333408388037 26.75220723724469 24.72857350374127 74-75 23.096135344544084 25.432402632930184 26.71895474808486 24.752507274440873 76-77 23.11389561644619 25.248747176808372 26.804020469926115 24.83333673681932 78-79 23.13500023769977 25.17397417845323 26.83150124804633 24.85952433580067 80-81 23.171650692295376 25.194845936910763 26.745607184055476 24.887896186738384 82-83 23.19198181320895 25.150519092764856 26.819651249917083 24.837847844109113 84-85 23.061448092556418 25.172435540085626 26.839851594987902 24.926264772370054 86-87 23.083426191739147 25.082992625618594 26.866543806596184 24.967037376046076 88-89 23.049942929463953 24.90050245605961 26.851736238679045 25.197818375797386 90-91 23.111989687583385 24.91939135304063 26.86917861614728 25.0994403432287 92-93 23.25798919758961 24.65487852557342 26.86698892980851 25.220143347028458 94-95 23.1569274548294 24.57430604868239 26.998752663701858 25.270013832786354 96-97 23.28265889965861 24.36683100646608 27.014959856188785 25.335550237686522 98 23.309056878009503 24.280692375659413 26.90206593854728 25.508184807783802 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 50.0 1 44.5 2 69.5 3 118.0 4 133.5 5 156.5 6 262.0 7 476.0 8 757.5 9 897.0 10 888.5 11 969.0 12 1104.0 13 1248.0 14 1402.0 15 1534.0 16 1657.5 17 1744.0 18 1763.0 19 1796.0 20 1869.0 21 1899.0 22 2014.0 23 2377.5 24 2859.0 25 3586.5 26 4859.5 27 6676.5 28 9399.0 29 13242.0 30 18516.0 31 25268.0 32 31425.0 33 37322.5 34 44677.0 35 52903.0 36 61221.5 37 69562.0 38 77048.0 39 83812.5 40 90616.5 41 97814.0 42 106375.5 43 114047.5 44 120030.5 45 125550.5 46 130658.5 47 135157.0 48 137754.0 49 137550.5 50 136733.0 51 135456.5 52 132582.5 53 129724.0 54 125174.5 55 118253.0 56 108513.5 57 97394.0 58 87438.0 59 75820.0 60 63823.0 61 53152.0 62 43309.5 63 33733.5 64 24945.0 65 18737.0 66 14272.5 67 11016.5 68 8425.0 69 6393.0 70 4817.0 71 3571.5 72 2869.0 73 2317.5 74 1803.0 75 1374.0 76 983.5 77 612.5 78 360.0 79 201.5 80 132.5 81 90.5 82 54.5 83 36.0 84 21.0 85 13.5 86 11.0 87 8.5 88 8.0 89 7.5 90 4.0 91 2.5 92 3.5 93 3.5 94 3.0 95 4.5 96 4.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3701858256638724 2 0.023057232741270493 3 0.017292924555952868 4 0.014720154235952349 5 0.020972963114940957 6 0.022601298760510907 7 0.014068819977724368 8 0.008662745634432133 9 0.0 10-11 3.2566712911399E-5 12-13 0.005226957422279539 14-15 0.0029635708749373092 16-17 0.0054874911255707315 18-19 0.035709400707349 20-21 0.07612469143039516 22-23 0.09480170128508249 24-25 0.06316313969165836 26-27 0.07190730210836899 28-29 0.05632412998026457 30-31 0.050738938715959636 32-33 0.018563026359497428 34-35 0.32934716767297806 36-37 0.5012994118451648 38-39 0.45627593124515575 40-41 0.4659970950492083 42-43 0.4168539252659072 44-45 0.39190782317577555 46-47 0.39068657144159813 48-49 0.3811933746279253 50-51 0.3774970527124815 52-53 0.4368661703499619 54-55 0.4381525555099621 56-57 0.40814232956210794 58-59 0.3941712097231178 60-61 0.4085168467605891 62-63 0.38964443662843334 64-65 0.43756635467755695 66-67 0.45798568367300413 68-69 0.4005217187408406 70-71 0.35945509375956647 72-73 0.3461678748917157 74-75 0.32812591593880064 76-77 0.3267255472836105 78-79 0.32685581413525605 80-81 0.3422761526988035 82-83 0.33794477988158744 84-85 0.33693521178133407 86-87 0.32425047710234417 88-89 0.36631038682741596 90-91 0.34584220776260166 92-93 0.33493235893728307 94-95 0.34191791885677814 96-97 0.3418527854309553 98 0.3359582103939921 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3070620.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.22133119845478 #Duplication Level Percentage of deduplicated Percentage of total 1 73.39341649991897 39.79488743828243 2 12.799977911833633 13.88063683380874 3 5.4473609037132835 8.860894791532555 4 2.7534187740565876 5.9717612510466225 5 1.6289317810784718 4.416142480077233 6 0.9893927451623371 3.218771503247727 7 0.6506763679535528 2.4696377194872055 8 0.4628534555812859 2.007722440913774 9 0.3411421162086971 1.6647461701824164 >10 1.4507224418032416 13.273491545817018 >50 0.06073246080336742 2.223939939495444 >100 0.020468739032141477 1.7882111821984237 >500 7.246422836909895E-4 0.2900008336805766 >1k 1.8116057081628934E-4 0.13915587022969125 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.2566712911399E-5 0.0 0.0 0.0 3 0.0 3.2566712911399E-5 0.0 0.0 0.0 4 0.0 3.2566712911399E-5 0.0 3.2566712911399E-5 0.0 5 0.0 3.2566712911399E-5 0.0 3.2566712911399E-5 0.0 6 0.0 3.2566712911399E-5 0.0 3.2566712911399E-5 0.0 7 0.0 3.2566712911399E-5 0.0 6.5133425822798E-5 0.0 8 0.0 3.2566712911399E-5 0.0 6.5133425822798E-5 0.0 9 0.0 3.2566712911399E-5 0.0 9.7700138734197E-5 0.0 10-11 0.0 3.2566712911399E-5 0.0 9.7700138734197E-5 0.0 12-13 0.0 3.2566712911399E-5 0.0 9.7700138734197E-5 0.0 14-15 0.0 3.2566712911399E-5 0.0 9.7700138734197E-5 0.0 16-17 0.0 3.2566712911399E-5 0.0 1.139834951898965E-4 0.0 18-19 0.0 3.2566712911399E-5 0.0 1.30266851645596E-4 0.0 20-21 0.0 3.2566712911399E-5 0.0 2.442503468354925E-4 0.0 22-23 0.0 3.2566712911399E-5 0.0 4.396506243038865E-4 0.0 24-25 3.2566712911399E-5 4.88500693670985E-5 0.0 8.46734535696374E-4 0.0 26-27 3.2566712911399E-5 6.5133425822798E-5 0.0 0.00130266851645596 0.0 28-29 3.2566712911399E-5 6.5133425822798E-5 0.0 0.00522695742227954 0.0 30-31 3.2566712911399E-5 6.5133425822798E-5 0.0 0.022747848968612202 0.0 32-33 3.2566712911399E-5 6.5133425822798E-5 0.0 0.059743634835961464 0.0 34-35 3.2566712911399E-5 6.5133425822798E-5 0.0 0.11155727507799729 0.0 36-37 3.2566712911399E-5 6.5133425822798E-5 0.0 0.19999218398890126 0.0 38-39 3.2566712911399E-5 6.5133425822798E-5 0.0 0.35002703037171645 0.0 40-41 3.2566712911399E-5 6.5133425822798E-5 0.0 0.5176804684395985 0.0 42-43 3.2566712911399E-5 6.5133425822798E-5 0.0 0.6956901212133055 0.0 44-45 3.2566712911399E-5 6.5133425822798E-5 0.0 0.9157922504249956 0.0 46-47 3.2566712911399E-5 6.5133425822798E-5 0.0 1.1830998300017586 0.0 48-49 3.2566712911399E-5 6.5133425822798E-5 0.0 1.4655834977952336 0.0 50-51 3.2566712911399E-5 6.5133425822798E-5 0.0 1.7771166735056765 0.0 52-53 3.2566712911399E-5 6.5133425822798E-5 0.0 2.095293458650045 0.0 54-55 3.2566712911399E-5 6.5133425822798E-5 0.0 2.454536868775687 0.0 56-57 3.2566712911399E-5 6.5133425822798E-5 0.0 2.872286378646658 0.0 58-59 3.2566712911399E-5 6.5133425822798E-5 0.0 3.327487608365737 3.2566712911399E-5 60-61 3.2566712911399E-5 8.14167822784975E-5 0.0 3.81523926763976 3.2566712911399E-5 62-63 3.2566712911399E-5 9.7700138734197E-5 0.0 4.312923774351759 3.2566712911399E-5 64-65 3.2566712911399E-5 9.7700138734197E-5 0.0 4.8451289967498425 3.2566712911399E-5 66-67 3.2566712911399E-5 9.7700138734197E-5 0.0 5.447841152601104 3.2566712911399E-5 68-69 3.2566712911399E-5 9.7700138734197E-5 0.0 6.118699155219467 3.2566712911399E-5 70-71 3.2566712911399E-5 9.7700138734197E-5 0.0 6.837202258827207 3.2566712911399E-5 72-73 3.2566712911399E-5 9.7700138734197E-5 0.0 7.554777211116972 3.2566712911399E-5 74-75 3.2566712911399E-5 9.7700138734197E-5 0.0 8.29226670835206 3.2566712911399E-5 76-77 3.2566712911399E-5 9.7700138734197E-5 0.0 9.097560101868678 3.2566712911399E-5 78-79 4.88500693670985E-5 9.7700138734197E-5 0.0 9.986826764627338 3.2566712911399E-5 80-81 6.5133425822798E-5 9.7700138734197E-5 0.0 10.90774827233588 3.2566712911399E-5 82-83 6.5133425822798E-5 9.7700138734197E-5 0.0 11.844643752727462 3.2566712911399E-5 84-85 6.5133425822798E-5 9.7700138734197E-5 0.0 12.776035458637018 3.2566712911399E-5 86 6.5133425822798E-5 9.7700138734197E-5 0.0 13.497762666822988 3.2566712911399E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2515 0.0 43.185257 1 GTATCAA 4400 0.0 42.674557 1 TCAACGC 5450 0.0 34.088078 4 CAACGCA 5635 0.0 33.05035 5 ATCAACG 5645 0.0 32.991802 3 TATCAAC 5950 0.0 31.147959 2 AACGCAG 6055 0.0 31.132067 6 GTACATG 9350 0.0 26.628529 1 TACATGG 9655 0.0 25.276941 2 ACGCAGA 7380 0.0 25.040154 7 ACATGGG 9855 0.0 24.250742 3 CGCAGAG 7900 0.0 23.332376 8 TATACCG 225 4.2164174E-9 22.426119 5 CATGGGG 7020 0.0 20.97548 4 GAGTACA 7060 0.0 20.924826 1 GCAGAGT 8750 0.0 20.017754 9 AGTACAT 6960 0.0 19.970943 2 AGAGTAC 7420 0.0 17.704525 10-11 GTATAGG 915 0.0 16.597946 1 TACACCG 455 1.6370905E-11 16.130676 5 >>END_MODULE