##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920874_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3070620 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.772702255570536 31.0 30.0 33.0 26.0 34.0 2 29.79472191283845 31.0 30.0 34.0 26.0 34.0 3 29.934946036956706 31.0 30.0 34.0 26.0 34.0 4 33.56050048524402 35.0 33.0 37.0 28.0 37.0 5 33.02641909451511 35.0 33.0 37.0 26.0 37.0 6 32.95576561085383 35.0 33.0 37.0 26.0 37.0 7 32.75128573382574 35.0 33.0 37.0 26.0 37.0 8 32.67305365040285 35.0 33.0 37.0 25.0 37.0 9 33.94529606398708 37.0 33.0 39.0 25.0 39.0 10-11 33.72872612045776 37.0 33.0 39.0 25.0 39.0 12-13 33.52885394480593 37.0 33.0 39.0 23.0 39.0 14-15 34.345459060385195 38.0 33.0 40.0 23.0 41.0 16-17 34.20094817984642 38.0 33.0 40.0 22.0 41.0 18-19 34.09633412796113 38.0 33.0 40.0 21.5 41.0 20-21 33.96502497866881 38.0 33.0 40.0 19.0 41.0 22-23 33.80814118972715 38.0 32.0 40.0 18.5 41.0 24-25 33.603626954816946 38.0 32.0 40.0 18.0 41.0 26-27 33.39819271026698 38.0 32.0 40.0 17.5 41.0 28-29 33.32686639831695 38.0 32.0 40.0 17.0 41.0 30-31 33.30760123362708 38.0 32.0 40.0 16.5 41.0 32-33 33.143139984758776 38.0 32.0 40.0 16.0 41.0 34-35 32.95765415453557 38.0 31.0 40.0 15.5 41.0 36-37 32.74303332877399 37.5 31.0 40.0 13.5 41.0 38-39 32.55083696452182 37.0 31.0 40.0 9.0 41.0 40-41 32.297160833968384 37.0 30.5 40.0 9.0 41.0 42-43 32.308134025050315 37.0 31.0 40.0 9.0 41.0 44-45 32.145689795546176 37.0 30.0 40.0 8.0 41.0 46-47 31.87044945320489 37.0 30.0 40.0 6.5 41.0 48-49 31.581786251636476 37.0 30.0 40.0 2.0 41.0 50-51 31.298215018465328 36.0 30.0 40.0 2.0 41.0 52-53 31.018929890380445 36.0 29.0 39.0 2.0 41.0 54-55 30.715841100494362 35.5 28.5 39.0 2.0 40.0 56-57 30.374561163543518 35.0 28.0 39.0 2.0 40.0 58-59 30.026379037458234 35.0 28.0 39.0 2.0 40.0 60-61 29.67689163751946 35.0 27.5 38.5 2.0 40.0 62-63 29.336015853475846 34.0 27.0 38.0 2.0 40.0 64-65 28.92301571018231 34.0 26.0 38.0 2.0 40.0 66-67 28.472875184816097 34.0 26.0 37.0 2.0 40.0 68-69 28.014815249037653 33.5 26.0 37.0 2.0 39.0 70-71 27.566107333372415 33.0 25.0 36.0 2.0 39.0 72-73 27.10842142629176 33.0 24.0 36.0 2.0 39.0 74-75 26.65958666327973 32.0 22.5 35.0 2.0 38.0 76-77 25.336715223635615 30.5 21.0 34.0 2.0 36.0 78-79 26.163363913476758 32.0 22.5 35.0 2.0 37.0 80-81 26.177214862145107 32.0 23.0 35.0 2.0 36.0 82-83 25.817175521555907 32.0 21.5 35.0 2.0 36.0 84-85 25.47753955227283 32.0 20.0 35.0 2.0 35.5 86-87 24.908599891878513 32.0 18.0 34.0 2.0 35.0 88-89 24.51487403195446 31.0 15.5 34.0 2.0 35.0 90-91 24.1063418788388 31.0 9.0 34.0 2.0 35.0 92-93 23.75624613270284 31.0 4.5 34.0 2.0 35.0 94-95 23.326635337488845 31.0 2.0 34.0 2.0 35.0 96-97 22.732906058059935 31.0 2.0 34.0 2.0 35.0 98-99 22.0568670170845 30.0 2.0 34.0 2.0 35.0 100-101 19.855172408178156 27.0 2.0 32.5 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 95555.0 3 40893.0 4 21874.0 5 15385.0 6 12901.0 7 13030.0 8 14407.0 9 16836.0 10 18826.0 11 21023.0 12 23369.0 13 25131.0 14 26780.0 15 28615.0 16 30040.0 17 30808.0 18 29512.0 19 28973.0 20 28778.0 21 30195.0 22 32061.0 23 36621.0 24 42369.0 25 49600.0 26 58515.0 27 68830.0 28 80417.0 29 93917.0 30 110537.0 31 129051.0 32 154002.0 33 186156.0 34 229575.0 35 290753.0 36 367373.0 37 387455.0 38 190152.0 39 10305.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.060990148628655 19.779122296778354 13.55508108767701 24.604806466915978 2 16.505721971458534 20.867414398395113 37.44139620011594 25.185467430030418 3 19.753120196831585 24.23312973354843 29.121902236275414 26.891847833344567 4 14.245201039134297 16.25956600248579 35.39023557706088 34.10499738131904 5 14.577757310194833 37.010810835457356 34.00400854861749 14.40742330573032 6 34.16843800532053 34.997424495331494 16.592020499713108 14.242116999634865 7 29.631812246356866 31.45285743543718 20.48017882044773 18.435151497758223 8 26.917770810814336 34.88844435097192 19.57500436114521 18.618780477068526 9 26.597095667895935 15.701284538188498 19.38384693554089 38.317772858374674 10-11 26.00506819402592 25.44186126124511 27.22516784622946 21.327902698499514 12-13 26.295551432692942 22.563652555597923 27.47944079550636 23.66135521620277 14-15 23.331304838441223 24.314910219946338 24.767140143348783 27.586644798263656 16-17 23.637214767965766 27.503240847254258 25.469442183219808 23.39010220156017 18-19 23.650121770673515 26.592009986091497 26.876926473979207 22.880941769255777 20-21 24.18462843607871 25.848170006536886 26.814954395748764 23.152247161635646 22-23 23.954681020306094 25.553576238988164 26.680667646963443 23.811075093742303 24-25 23.62931445438955 25.918952269451808 26.74610625042971 23.705627025728937 26-27 23.58986959547435 26.122682546864763 26.694189142531542 23.593258715129338 28-29 23.632766557742368 26.20915746022851 26.624693344975093 23.533382637054025 30-31 23.895999911397244 26.04083805175573 26.429794369946467 23.63336766690055 32-33 23.613948489674836 26.09601721636793 26.367971196594254 23.92206309736298 34-35 23.922503474324202 26.071543798634632 26.49947239783174 23.50648032920942 36-37 24.00794432846026 25.868353082857443 26.448883875273914 23.67481871340838 38-39 23.735773182744705 25.976636371069862 26.51090045324489 23.776689992940547 40-41 23.92710811073172 25.8802593234683 26.59902783016932 23.593604735630656 42-43 23.862843917019877 25.80095440627116 26.49211886856182 23.844082808147142 44-45 23.63383016185067 25.799928659963744 26.571980956445117 23.99426022174047 46-47 23.75360449882501 25.842914788776326 26.449426741549352 23.95405397084931 48-49 23.650182188295165 25.893015776081423 26.461280407124683 23.99552162849873 50-51 23.68906288068396 25.932223761063046 26.426713900249236 23.95199945800376 52-53 23.82920466834624 25.862735222030448 26.460372648919606 23.84768746070371 54-55 23.448484540541667 25.80223788231738 26.56806148346179 24.181216093679158 56-57 23.473550354644807 25.89683033506472 26.443766769642334 24.18585254064814 58-59 23.35931070352546 25.76425023603701 26.515188277582784 24.36125078285474 60-61 23.4581978517965 25.816211789646225 26.608074362995183 24.11751599556209 62-63 23.287298013622504 25.823330876994415 26.57133900326924 24.31803210611384 64-65 23.117937854832412 25.733969672439088 26.558819922840055 24.58927254988844 66-67 23.124169229566306 25.759878023352794 26.428045506672227 24.687907240408673 68-69 23.213709185204284 25.696165996045867 26.43167857399545 24.6584462447544 70-71 23.060394530257526 25.437331839295368 26.56543365103356 24.93683997941355 72-73 23.120168806587404 25.495897044011333 26.41792792943955 24.96600621996171 74-75 22.981749793639114 25.61958379066817 26.31077256789538 25.08789384779734 76-77 22.911343478770416 25.42274558809943 26.58972548428156 25.07618544884859 78-79 22.886780658017475 25.39531501675583 26.561329723817266 25.15657460140943 80-81 22.882098743918363 25.454911447596384 26.43794035574702 25.22504945273823 82-83 22.848286887807507 25.421126747030492 26.510355605113663 25.22023076004834 84-85 22.702646187840124 25.372724761809224 26.479336388046754 25.44529266230391 86-87 22.67939768616855 25.320499791772473 26.500466654945193 25.499635867113778 88-89 22.573707074791326 25.215621332176454 26.48701881267862 25.723652780353607 90-91 22.477240364154174 25.21549859283884 26.533110164114927 25.774150878892062 92-93 22.57145410869806 25.01876254001899 26.486627983072292 25.923155368210658 94-95 22.336402791008197 24.954495493515058 26.657157047132866 26.05194466834388 96-97 22.392320048148697 24.741816284577567 26.690040801331904 26.175822865941832 98-99 22.281517407430385 24.779096395440046 26.561697253570127 26.37768894355944 100-101 22.330942440254677 24.68574441604308 26.69691827360009 26.286394870102153 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 51.0 1 41.5 2 53.5 3 86.0 4 77.0 5 86.5 6 168.5 7 330.5 8 499.5 9 526.5 10 460.5 11 428.0 12 432.5 13 470.0 14 529.0 15 611.5 16 692.0 17 766.0 18 846.0 19 946.0 20 1098.0 21 1310.5 22 1584.0 23 1965.0 24 2416.0 25 3079.5 26 4091.0 27 5658.5 28 7702.0 29 10663.5 30 15234.5 31 20678.0 32 27287.0 33 33237.0 34 38491.0 35 45545.5 36 54447.0 37 63371.5 38 71091.0 39 77411.0 40 83506.0 41 90486.0 42 98640.0 43 107033.5 44 113926.5 45 119783.5 46 125099.5 47 130044.5 48 134266.5 49 136806.5 50 136836.5 51 134422.5 52 131591.0 53 128861.0 54 124125.5 55 116385.0 56 106474.5 57 95621.0 58 85614.0 59 75618.0 60 63987.0 61 53046.5 62 43526.0 63 34039.0 64 25616.5 65 19548.5 66 14786.0 67 11219.0 68 8668.5 69 6638.5 70 5146.5 71 3852.5 72 2834.5 73 2380.0 74 1898.0 75 1372.5 76 984.5 77 643.5 78 391.5 79 189.0 80 103.0 81 70.5 82 41.5 83 24.5 84 12.5 85 6.5 86 3.0 87 2.5 88 3.0 89 2.0 90 1.5 91 0.5 92 0.5 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18452299535598674 2 0.0 3 0.012407917619243019 4 0.012114817203040428 5 0.0059271417498746185 6 0.10616748409116074 7 0.14016713237066128 8 0.12261367411141724 9 0.14016713237066128 10-11 0.11243657632660504 12-13 0.11207834248457965 14-15 0.11351127785268122 16-17 0.06441695813874722 18-19 0.07661319212406616 20-21 0.03629560153975418 22-23 0.0814656323478646 24-25 0.054158443571656535 26-27 0.06436810806938012 28-29 0.03940572262279279 30-31 0.024034234128612462 32-33 0.032013078791905215 34-35 0.019491177677472302 36-37 0.024653001673929042 38-39 0.03181767851443682 40-41 0.025597436348359617 42-43 0.014296786968104162 44-45 0.026541871022790185 46-47 0.03316919710025988 48-49 0.010014264220255193 50-51 0.015892555900762714 52-53 0.006399359087089904 54-55 0.012896418312914005 56-57 0.004998990431899747 58-59 0.0041359725397476736 60-61 0.022992099315447694 62-63 0.010828432043040168 64-65 0.007962561306837056 66-67 0.03842872123545082 68-69 0.08765330780103041 70-71 0.02084269626329536 72-73 0.042613543844565595 74-75 0.08377786896457394 76-77 0.24004924086992205 78-79 0.07926737922634516 80-81 0.016836990575193285 82-83 0.012196233985318926 84-85 0.012766151461268409 86-87 0.2561209136916974 88-89 0.6103653333854401 90-91 0.26284593990790134 92-93 0.34737284326943746 94-95 0.001465502081012955 96-97 0.004298806104304668 98-99 0.0034683549250639936 100-101 0.00486872358025415 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3070620.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.84081054926635 #Duplication Level Percentage of deduplicated Percentage of total 1 73.80500584416006 40.475263430870775 2 12.77224202720156 14.008802106062767 3 5.320931134621267 8.754125288983731 4 2.7355246697975697 6.000735606768516 5 1.5355337103557198 4.210495665081503 6 0.9246500145406135 3.042513376307889 7 0.6445968204366197 2.474514847715688 8 0.4374553015326049 1.9192322652097416 9 0.3204319850886532 1.5815474809354955 >10 1.4220833120614558 13.09076566839161 >50 0.06110470916775325 2.258239596789716 >100 0.019367456353254216 1.699143442076139 >500 8.345669757586968E-4 0.3140688146391604 >1k 2.3844770707136167E-4 0.17055241016729733 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 3.2566712911399E-5 0.0 10-11 0.0 0.0 0.0 3.2566712911399E-5 0.0 12-13 0.0 0.0 0.0 3.2566712911399E-5 0.0 14-15 0.0 0.0 0.0 3.2566712911399E-5 0.0 16-17 0.0 0.0 0.0 4.88500693670985E-5 0.0 18-19 0.0 0.0 0.0 8.14167822784975E-5 0.0 20-21 0.0 0.0 0.0 2.116836339240935E-4 0.0 22-23 0.0 0.0 0.0 3.7451719848108854E-4 0.0 24-25 0.0 0.0 0.0 7.16467684050778E-4 0.0 26-27 0.0 0.0 0.0 0.0012538184470888615 0.0 28-29 0.0 0.0 0.0 0.004998990431899747 0.0 30-31 0.0 0.0 0.0 0.02188483107646013 0.0 32-33 0.0 0.0 0.0 0.05720343122887235 0.0 34-35 0.0 0.0 0.0 0.10667226814128743 0.0 36-37 0.0 0.0 0.0 0.1918342224045958 0.0 38-39 0.0 0.0 0.0 0.3355511264825996 0.0 40-41 0.0 0.0 0.0 0.49726113944415135 0.0 42-43 0.0 0.0 0.0 0.6708905693312751 0.0 44-45 0.0 0.0 0.0 0.8839908552670145 0.0 46-47 0.0 0.0 0.0 1.1412516039106109 0.0 48-49 0.0 0.0 0.0 1.412402055610919 0.0 50-51 0.0 0.0 0.0 1.7100455282646503 0.0 52-53 0.0 0.0 0.0 2.0118086901016734 0.0 54-55 0.0 0.0 0.0 2.3537103256019956 0.0 56-57 3.2566712911399E-5 0.0 0.0 2.751919807726127 0.0 58-59 3.2566712911399E-5 0.0 0.0 3.1863597579641896 0.0 60-61 3.2566712911399E-5 0.0 0.0 3.6522917195875753 0.0 62-63 3.2566712911399E-5 0.0 0.0 4.128628745986152 0.0 64-65 3.2566712911399E-5 0.0 0.0 4.63767903550423 0.0 66-67 3.2566712911399E-5 0.0 0.0 5.212351251538777 0.0 68-69 3.2566712911399E-5 0.0 0.0 5.84977952335359 0.0 70-71 3.2566712911399E-5 0.0 0.0 6.535439096990184 0.0 72-73 3.2566712911399E-5 0.0 0.0 7.224094808214628 0.0 74-75 3.2566712911399E-5 0.0 0.0 7.9351075678527465 0.0 76-77 3.2566712911399E-5 0.0 3.2566712911399E-5 8.71096065289746 0.0 78-79 3.2566712911399E-5 0.0 3.2566712911399E-5 9.564029414255101 0.0 80-81 3.2566712911399E-5 0.0 3.2566712911399E-5 10.447010701421863 0.0 82-83 3.2566712911399E-5 0.0 3.2566712911399E-5 11.348017664185083 0.0 84-85 3.2566712911399E-5 0.0 3.2566712911399E-5 12.24327660211944 0.0 86-87 3.2566712911399E-5 0.0 3.2566712911399E-5 13.177583028834567 0.0 88-89 3.2566712911399E-5 0.0 3.2566712911399E-5 14.1779021826211 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4685 0.0 44.050705 1 GGTATCA 2660 0.0 41.295532 1 TCAACGC 5935 0.0 34.23463 4 CAACGCA 6010 0.0 33.72457 5 ATCAACG 6075 0.0 33.36754 3 TATCAAC 6485 0.0 31.54922 2 AACGCAG 6550 0.0 31.08916 6 GTACATG 9610 0.0 26.571964 1 ACGCAGA 7780 0.0 25.8694 7 TACATGG 9885 0.0 25.259829 2 CGCAGAG 8140 0.0 24.663767 8 ACATGGG 9975 0.0 23.605398 3 GCAGAGT 9195 0.0 20.595135 9 GAGTACA 7320 0.0 19.878473 1 ATACCGT 415 0.0 19.444366 6 CATGGGG 6985 0.0 19.301653 4 AGAGTAC 7955 0.0 18.70244 10-11 AGTACAT 7445 0.0 17.980665 2 TAAGGTG 1235 0.0 16.911367 5 ATGGGGG 3610 0.0 16.830452 5 >>END_MODULE