FastQCFastQC Report
Mon 15 Aug 2016
SRR2920873_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920873_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3914014
Sequences flagged as poor quality0
Sequence length101
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA33750.042.2753451
GTATCAA57050.042.0993541
TCAACGC73350.032.0998884
CAACGCA74900.031.4323885
ATCAACG76550.030.944063
TATCAAC77500.030.8682442
AACGCAG81200.029.1113246
GTACATG130750.024.9529631
TACATGG135850.023.7242872
ACGCAGA101100.023.0525477
ACATGGG140350.021.8833523
CGCAGAG106150.021.865578
GAGTACA101750.019.8185161
GTATTAA21750.019.6799011
TAAGGCG11450.018.6545415
AGTACAT102900.018.4052032
CATGGGG103250.017.9766464
GCAGAGT121950.017.826079
TAAGGTG18000.017.6676925
TATACAG16000.017.2062235
Produced by FastQC (version 0.11.5)