##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920871_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3524428 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.26685550109124 31.0 30.0 34.0 27.0 34.0 2 30.26720364269039 31.0 30.0 34.0 26.0 34.0 3 30.403332398902744 31.0 30.0 34.0 27.0 34.0 4 34.06394087210747 35.0 35.0 37.0 30.0 37.0 5 33.59022882578393 35.0 35.0 37.0 28.0 37.0 6 33.540872447954676 35.0 35.0 37.0 28.0 37.0 7 33.350003745288596 35.0 33.0 37.0 27.0 37.0 8 33.28062539509958 35.0 33.0 37.0 27.0 37.0 9 34.60825870183758 38.0 34.0 39.0 27.0 39.0 10-11 34.418460385628535 37.5 34.0 39.0 27.0 39.0 12-13 34.244573020075876 37.0 34.0 39.0 27.0 39.0 14-15 35.13323027169231 38.0 34.0 40.0 26.0 41.0 16-17 35.007265718011546 38.0 34.0 40.0 25.5 41.0 18-19 34.92590230244454 38.0 34.0 40.0 25.0 41.0 20-21 34.812383739999795 38.0 34.0 40.0 25.0 41.0 22-23 34.66993580234863 38.0 34.0 40.0 24.5 41.0 24-25 34.482300532171465 38.0 33.0 40.0 24.0 41.0 26-27 34.29743039154155 38.0 33.0 40.0 23.5 41.0 28-29 34.237831358733956 38.0 33.0 40.0 23.5 41.0 30-31 34.2100347914612 38.0 33.0 40.0 23.0 41.0 32-33 34.0575011037252 38.0 33.0 40.0 22.5 41.0 34-35 33.87759190994964 38.0 33.0 40.0 21.5 41.0 36-37 33.68427089445436 38.0 33.0 40.0 19.5 41.0 38-39 33.49582911042586 38.0 32.0 40.0 18.5 41.0 40-41 33.25418280640149 38.0 32.0 40.0 17.0 41.0 42-43 33.2666642643856 38.0 32.0 40.0 16.5 41.0 44-45 33.11121818916431 38.0 32.0 40.0 15.0 41.0 46-47 32.84226192165083 37.5 31.5 40.0 13.5 41.0 48-49 32.563892779197076 37.0 31.0 40.0 9.5 41.0 50-51 32.294815073538174 37.0 31.0 40.0 8.5 41.0 52-53 32.03090416373948 37.0 31.0 40.0 8.0 41.0 54-55 31.737243178183807 36.0 30.0 39.5 6.5 41.0 56-57 31.397950674549175 36.0 30.0 39.0 2.0 41.0 58-59 31.054238588502873 35.0 29.0 39.0 2.0 40.0 60-61 30.71500666207396 35.0 29.0 39.0 2.0 40.0 62-63 30.382527746346355 35.0 28.5 38.5 2.0 40.0 64-65 29.968244492439624 34.5 28.0 38.0 2.0 40.0 66-67 29.530061331938118 34.0 28.0 37.5 2.0 40.0 68-69 29.08226639897311 34.0 27.0 37.0 2.0 39.5 70-71 28.654197078220918 34.0 26.0 36.0 2.0 39.0 72-73 28.22491266667953 33.5 26.0 36.0 2.0 39.0 74-75 27.799489874669025 33.0 26.0 35.5 2.0 38.0 76-77 26.364620868975052 31.5 24.0 34.0 2.0 36.0 78-79 27.2142580299555 33.0 26.0 35.0 2.0 37.0 80-81 27.254861923693717 33.0 26.0 35.0 2.0 36.5 82-83 26.93233894975298 33.0 25.0 35.0 2.0 36.0 84-85 26.6320302188043 33.0 25.0 35.0 2.0 36.0 86-87 26.107054534806785 32.0 24.0 35.0 2.0 35.0 88-89 25.75017931987829 32.0 22.5 35.0 2.0 35.0 90-91 25.399751534149654 32.0 20.0 34.5 2.0 35.0 92-93 25.10057816474049 32.0 19.5 34.0 2.0 35.0 94-95 24.725193563324318 32.0 17.5 34.0 2.0 35.0 96-97 24.20419043884568 31.5 6.0 34.0 2.0 35.0 98-99 23.61920686136871 31.0 2.0 34.0 2.0 35.0 100-101 21.449115714663485 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 79410.0 3 36693.0 4 19830.0 5 13975.0 6 12297.0 7 12403.0 8 14019.0 9 16027.0 10 18624.0 11 21184.0 12 22834.0 13 25444.0 14 27696.0 15 29650.0 16 31327.0 17 32809.0 18 31032.0 19 29406.0 20 29509.0 21 30398.0 22 33562.0 23 37745.0 24 43972.0 25 51814.0 26 62561.0 27 73178.0 28 86461.0 29 101234.0 30 118944.0 31 142029.0 32 169883.0 33 207136.0 34 262274.0 35 339665.0 36 449239.0 37 512719.0 38 279360.0 39 18085.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.63167155641958 19.120407311064184 13.589808240766299 24.65811289174994 2 16.197720594661032 20.671808304780235 37.77597386015547 25.35449724040327 3 19.31007925938685 24.575432626399724 29.0458935998563 27.068594514357123 4 13.873912834967717 16.371047449757505 35.4724331355728 34.28260657970198 5 14.540569851548488 37.11753170452937 33.74880575089645 14.5930926930257 6 33.917617221529014 34.906805905592215 16.800102707927454 14.375474164951319 7 29.337645469969193 31.654282344363438 20.69788646771623 18.310185717951143 8 27.11495575346941 34.09525432877374 19.845087427735404 18.94470249002145 9 27.052144923442984 15.515046159817448 19.170978714287624 38.261830202451954 10-11 25.84818727470536 25.28853337272291 27.283212939475455 21.580066413096276 12-13 26.562630267419706 22.54629974839525 27.389041451936247 23.502028532248797 14-15 23.584350928085616 24.264787969017508 24.779444202515062 27.371416900381814 16-17 23.665166573895714 27.257666592705437 25.590827444471937 23.48633938892691 18-19 23.710626209666426 26.26184394053666 27.072533416325157 22.954996433471752 20-21 24.496819692404458 25.53176965430662 26.702009882873796 23.269400770415128 22-23 24.149644796150728 25.345314594722307 26.724741367241624 23.780299241885345 24-25 23.838569116640688 25.756743639975056 26.625424088014704 23.779263155369552 26-27 23.680502035052793 25.735713000985623 26.73870989676886 23.845075067192727 28-29 23.726594537595982 25.892609667812206 26.664036394265533 23.716759400326275 30-31 23.870901826897082 25.706951489209533 26.401979794797786 24.02016688909559 32-33 23.664958867939898 25.9331291997537 26.22884238039035 24.173069551916054 34-35 24.072260172264386 25.835174077105915 26.353462818962335 23.739102931667365 36-37 24.213383736258745 25.519489273059836 26.30229551836826 23.964831472313154 38-39 24.00252148434368 25.595861745798675 26.335206707647885 24.066410062209766 40-41 24.102957355486453 25.538418574633752 26.500889092535296 23.857734977344496 42-43 23.995367699494118 25.558967760902462 26.320967573045138 24.124696966558275 44-45 23.823469603362447 25.524502367173156 26.425266989006545 24.226761040457852 46-47 24.02080506301378 25.543847389802167 26.25003654268455 24.185311004499503 48-49 23.842839207226902 25.609001193350778 26.210755877263214 24.33740372215911 50-51 23.72634639246348 25.787254631399943 26.28254288740553 24.203856088731047 52-53 23.95918754174685 25.461691075864206 26.300543836959005 24.278577545429936 54-55 23.531716967976987 25.590558107739593 26.32502241063202 24.552702513651404 56-57 23.564079093050612 25.672397619467834 26.111568575931248 24.651954711550303 58-59 23.472404134045494 25.355716432444947 26.351049968561096 24.82082946494846 60-61 23.375137321432472 25.485822014395797 26.54979883172842 24.589241832443303 62-63 23.315144137318498 25.471727292590668 26.444735774261012 24.768392795829822 64-65 23.202843561954918 25.43656005390203 26.279637639655164 25.08095874448789 66-67 23.19505620988202 25.511872396783918 26.15391624179758 25.139155151536485 68-69 23.375957844545372 25.219293419032006 26.238632418436335 25.166116317986287 70-71 23.073539380026613 25.069873613790794 26.24614270833348 25.61044429784911 72-73 22.950053252005752 25.143391528275792 26.115368369898196 25.791186849820257 74-75 22.8513858467931 25.248599925995784 26.14443146672891 25.755582760482206 76-77 22.78553409572456 24.882953701939346 26.4859518846004 25.845560317735693 78-79 22.629990694515158 25.054031160453878 26.366609978080856 25.94936816695011 80-81 22.590987221534363 24.97391324582789 26.34515280154855 26.0899467310892 82-83 22.479995539193588 24.865491221476343 26.435924928487342 26.218588310842726 84-85 22.24799172185172 24.790800960222068 26.38814418881624 26.57306312910997 86-87 22.14835815584125 24.777951474252582 26.468246851026407 26.605443518879763 88-89 22.05640399043007 24.632087526672557 26.371166072008016 26.940342410889357 90-91 21.868760579809102 24.6448455881307 26.351384799214784 27.13500903284542 92-93 21.90990600045787 24.367613040343606 26.4800685206889 27.24241243850963 94-95 21.572325768100896 24.22035810163488 26.694871070614905 27.51244505964932 96-97 21.594054158043154 24.024097985459715 26.79161519040212 27.59023266609501 98-99 21.33269226076539 24.10988048129814 26.640395743611073 27.91703151432539 100-101 21.368530250992553 23.916804379260483 26.766660575532708 27.948004794214253 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 188.0 1 128.5 2 121.5 3 186.5 4 172.0 5 172.0 6 278.0 7 572.0 8 870.5 9 870.5 10 727.5 11 653.0 12 675.0 13 773.0 14 842.0 15 876.5 16 971.0 17 1105.5 18 1223.0 19 1347.0 20 1543.5 21 1836.0 22 2104.0 23 2454.0 24 2957.5 25 3719.0 26 4774.5 27 6196.0 28 8025.0 29 10490.0 30 14510.0 31 20976.0 32 29069.0 33 35066.0 34 39918.5 35 47348.5 36 56550.0 37 63976.0 38 72219.5 39 80899.5 40 87559.0 41 95105.5 42 104097.0 43 114550.5 44 124687.5 45 132796.0 46 140542.5 47 147673.5 48 152192.5 49 156054.0 50 158711.0 51 158905.5 52 158471.5 53 157585.0 54 153139.0 55 144378.0 56 133440.5 57 121164.5 58 110960.0 59 98334.5 60 81822.5 61 67199.0 62 54367.5 63 41446.5 64 30053.5 65 22474.5 66 16519.5 67 12215.0 68 8872.0 69 5945.0 70 4110.0 71 3026.0 72 2395.0 73 1973.5 74 1483.5 75 1134.0 76 827.5 77 439.0 78 230.0 79 131.0 80 65.0 81 27.0 82 14.0 83 6.5 84 3.5 85 3.5 86 3.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18519317177141936 2 0.0 3 0.012172187940851679 4 0.013307123879392627 5 0.00700822942049036 6 0.10682584521516682 7 0.14354102282696654 8 0.12421873847330689 9 0.14257632727920672 10-11 0.11457178299570882 12-13 0.11421711551491476 14-15 0.1168132814743272 16-17 0.06561348394689862 18-19 0.07933202210401234 20-21 0.03582141556019871 22-23 0.083105684099661 24-25 0.05721495800169559 26-27 0.06479065539145643 28-29 0.038176407632671175 30-31 0.023564107423956454 32-33 0.03068583043830091 34-35 0.02032953999911475 36-37 0.02335130693548003 38-39 0.031395165399889 40-41 0.0252948847302314 42-43 0.013534111067100818 44-45 0.026146086684137114 46-47 0.03265778163151581 48-49 0.009008554012168784 50-51 0.014768353900264099 52-53 0.005958413677339983 54-55 0.012228934737778727 56-57 0.004936971332653128 58-59 0.0037452885971851315 60-61 0.021592156230741556 62-63 0.010157676649941494 64-65 0.007277776705893836 66-67 0.03921203667658979 68-69 0.09009972682091959 70-71 0.021123995156093412 72-73 0.044149008009242915 74-75 0.08531880917981584 76-77 0.23544246045031988 78-79 0.08083581222257909 80-81 0.01727939966428595 82-83 0.011391919483104775 84-85 0.012810589406280963 86-87 0.2563962152156321 88-89 0.6241722060998267 90-91 0.2689230706372779 92-93 0.3545539872001925 94-95 0.0010640024423821397 96-97 0.004256009769528559 98-99 0.0035750482064039893 100-101 0.00510721172343427 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3524428.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.235173638171 #Duplication Level Percentage of deduplicated Percentage of total 1 68.23196576647418 26.77093024521354 2 11.818563997974273 9.27406821228714 3 5.817452003660339 6.847462184860177 4 3.527749892501823 5.536475183373924 5 2.3058825195155266 4.523585052120746 6 1.5692313213605509 3.694143802322264 7 1.1920289288161698 3.2738623402677782 8 0.921329004188284 2.89188027657684 9 0.7008646960788638 2.474869324276635 >10 3.687899353371936 25.07336557955528 >50 0.16510181003078656 4.393112002256649 >100 0.058001802593198926 3.789945077013406 >500 0.0028375413726513484 0.7405252776577927 >1k 0.0010913620614809007 0.7157754422178161 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.8373398463523727E-5 2 0.0 0.0 0.0 0.0 2.8373398463523727E-5 3 0.0 0.0 0.0 0.0 2.8373398463523727E-5 4 0.0 0.0 0.0 0.0 2.8373398463523727E-5 5 0.0 0.0 0.0 0.0 2.8373398463523727E-5 6 0.0 0.0 0.0 0.0 8.512019539057118E-5 7 0.0 0.0 0.0 0.0 8.512019539057118E-5 8 0.0 0.0 0.0 0.0 8.512019539057118E-5 9 0.0 0.0 0.0 0.0 8.512019539057118E-5 10-11 0.0 0.0 0.0 0.0 8.512019539057118E-5 12-13 0.0 0.0 0.0 1.4186699231761863E-5 2.1280048847642795E-4 14-15 0.0 0.0 0.0 5.674679692704745E-5 2.695472854034754E-4 16-17 0.0 0.0 0.0 1.134935938540949E-4 3.12107383098761E-4 18-19 0.0 0.0 0.0 1.7024039078114236E-4 3.404807815622847E-4 20-21 0.0 0.0 0.0 1.9861378924466609E-4 3.9722757848933217E-4 22-23 0.0 0.0 0.0 4.8234777387990335E-4 4.539743754163796E-4 24-25 0.0 0.0 0.0 0.0013051763293220912 4.539743754163796E-4 26-27 0.0 0.0 0.0 0.002482672365558326 4.965344731116652E-4 28-29 0.0 0.0 0.0 0.009391594891426353 5.107211723434271E-4 30-31 0.0 0.0 0.0 0.03461554612549894 5.107211723434271E-4 32-33 0.0 0.0 0.0 0.08713470668148136 5.107211723434271E-4 34-35 0.0 0.0 0.0 0.15962873975578448 5.674679692704745E-4 36-37 0.0 0.0 0.0 0.27595967345623174 5.674679692704745E-4 38-39 0.0 0.0 0.0 0.4637490111870635 5.674679692704745E-4 40-41 0.0 0.0 0.0 0.6836002891816771 5.674679692704745E-4 42-43 0.0 0.0 0.0 0.9119352133168843 5.816546685022364E-4 44-45 0.0 0.0 0.0 1.1889305158170347 6.525881646610457E-4 46-47 0.0 0.0 0.0 1.5192394340301463 7.23521660819855E-4 48-49 0.0 0.0 0.0 1.8684024755222692 7.518950592833788E-4 50-51 0.0 0.0 0.0 2.2459672888763795 7.944551569786643E-4 52-53 0.0 0.0 0.0 2.6191909722655704 8.795753523692355E-4 54-55 0.0 0.0 0.0 3.038407934564134 9.36322149296283E-4 56-57 0.0 0.0 0.0 3.524798917725089 9.788822469915686E-4 58-59 0.0 0.0 0.0 4.045323099237663 9.930689462233303E-4 60-61 0.0 0.0 0.0 4.600051412598016 0.0010498157431503778 62-63 0.0 0.0 0.0 5.156865170745437 0.0011065625400774252 64-65 0.0 0.0 0.0 5.750606906993134 0.0011065625400774252 66-67 0.0 0.0 0.0 6.439782568972895 0.0011491226377727108 68-69 0.0 0.0 0.0 7.188556554425285 0.0011633093370044727 70-71 0.0 0.0 0.0 7.967987996917514 0.0011633093370044727 72-73 0.0 0.0 0.0 8.766443803079536 0.0012058694346997584 74-75 0.0 0.0 0.0 9.589016997935552 0.001248429532395044 76-77 0.0 0.0 0.0 10.483857238678162 0.001248429532395044 78-79 0.0 0.0 0.0 11.454610507009932 0.001248429532395044 80-81 0.0 0.0 0.0 12.456546140253113 0.0012626162316268057 82-83 0.0 0.0 0.0 13.474739730815894 0.0012768029308585676 84-85 0.0 0.0 0.0 14.495543674037318 0.0012768029308585676 86-87 0.0 0.0 0.0 15.548551424514844 0.0013051763293220912 88-89 0.0 0.0 0.0 16.67015186577794 0.001333549727785615 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7715 0.0 40.80687 1 GGTATCA 4565 0.0 39.17042 1 ATCAACG 10015 0.0 30.905489 3 TATCAAC 10450 0.0 30.071564 2 TCAACGC 10280 0.0 30.06262 4 CAACGCA 10445 0.0 29.491793 5 AACGCAG 10800 0.0 28.52279 6 GTACATG 13215 0.0 25.910543 1 ACGCAGA 12440 0.0 24.533623 7 TACATGG 13810 0.0 24.19877 2 CGCAGAG 12645 0.0 23.871775 8 ACATGGG 14490 0.0 22.474743 3 TAAGGCG 1165 0.0 22.000511 5 TTACGTA 160 5.015634E-5 20.76907 4 GCAGAGT 13930 0.0 20.579378 9 CATGGGG 9850 0.0 19.422619 4 AGAGTAC 11605 0.0 19.179764 10-11 GTATTAA 1990 0.0 18.87927 1 GTATAGG 660 0.0 18.01388 1 GAGTACA 10215 0.0 17.458385 1 >>END_MODULE