##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920869_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2055597 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.62567030405279 31.0 30.0 33.0 22.0 34.0 2 28.661899195221633 31.0 28.0 34.0 18.0 34.0 3 28.73023360123604 31.0 28.0 34.0 22.0 34.0 4 32.214470540675045 35.0 32.0 37.0 23.0 37.0 5 32.180740193724745 35.0 32.0 37.0 22.0 37.0 6 32.3046224527473 35.0 32.0 37.0 24.0 37.0 7 32.13314866678634 35.0 32.0 37.0 22.0 37.0 8 32.08005654804906 35.0 32.0 37.0 22.0 37.0 9 33.33911608160549 37.0 33.0 39.0 22.0 39.0 10-11 33.14355780826689 37.0 32.0 39.0 19.5 39.0 12-13 32.97754423654053 37.0 32.0 39.0 18.0 39.0 14-15 33.73941219995943 38.0 32.0 40.0 17.5 41.0 16-17 33.62685803686229 38.0 32.0 40.0 17.0 41.0 18-19 33.518035879600916 38.0 32.0 40.0 17.5 41.0 20-21 33.42753078546038 38.0 32.0 40.0 18.0 41.0 22-23 33.204348420434556 38.0 32.0 40.0 16.0 41.0 24-25 33.01187830104831 38.0 32.0 40.0 15.5 41.0 26-27 33.047798279526575 38.0 32.0 40.0 13.0 41.0 28-29 32.887701966873855 38.0 32.0 40.0 10.0 41.0 30-31 32.63588144952537 38.0 31.0 40.0 9.5 41.0 32-33 32.392426628371226 37.0 31.0 40.0 9.0 41.0 34-35 32.06808143814182 37.0 30.0 40.0 8.0 41.0 36-37 31.76455185525178 37.0 30.0 40.0 4.5 41.0 38-39 31.564782639787857 37.0 30.0 40.0 2.0 41.0 40-41 31.3615976283289 37.0 30.0 40.0 2.0 41.0 42-43 31.124150307672174 36.5 30.0 40.0 2.0 41.0 44-45 30.839385103208457 36.0 29.0 39.0 2.0 41.0 46-47 30.57698493430376 36.0 28.5 39.0 2.0 40.0 48-49 30.269825262442005 35.5 28.0 39.0 2.0 40.0 50-51 29.12276093027962 34.0 25.5 38.0 2.0 39.5 52-53 29.57361802921487 34.5 27.5 38.5 2.0 39.5 54-55 30.21753169517177 36.0 28.0 39.0 2.0 40.0 56-57 30.173057267548067 35.5 28.0 39.0 2.0 41.0 58-59 29.922373889434553 35.0 28.0 39.0 2.0 40.5 60-61 29.595890390966712 35.0 28.0 39.0 2.0 40.0 62-63 29.199755107640264 35.0 26.5 38.5 2.0 40.0 64-65 28.773801236331828 34.0 26.0 38.0 2.0 40.0 66-67 28.37962207572788 34.0 26.0 37.5 2.0 40.0 68-69 27.92551531258316 34.0 25.5 37.0 2.0 39.5 70-71 27.59002348222925 34.0 25.0 36.5 2.0 39.0 72-73 27.120857347038353 33.0 24.0 36.0 2.0 39.0 74-75 26.66828517457459 33.0 22.5 35.5 2.0 38.5 76-77 26.24734079685853 33.0 21.5 35.0 2.0 37.5 78-79 25.783510581110985 32.0 20.0 35.0 2.0 37.0 80-81 25.329170552399134 32.0 18.5 35.0 2.0 36.0 82-83 24.853489035058914 32.0 16.0 35.0 2.0 36.0 84-85 24.441575367156112 31.0 9.0 34.5 2.0 35.5 86-87 23.979319876415467 31.0 4.5 34.0 2.0 35.0 88-89 23.44461803553907 31.0 2.0 34.0 2.0 35.0 90-91 22.93911963288524 31.0 2.0 34.0 2.0 35.0 92-93 22.39851074894544 30.0 2.0 34.0 2.0 35.0 94-95 21.754108173927087 30.0 2.0 34.0 2.0 35.0 96-97 21.101837568356054 29.0 2.0 34.0 2.0 35.0 98 20.702059790902595 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 102486.0 3 17622.0 4 13068.0 5 10579.0 6 9883.0 7 10035.0 8 11534.0 9 13258.0 10 14644.0 11 15771.0 12 16643.0 13 16447.0 14 15626.0 15 16449.0 16 17822.0 17 19087.0 18 19613.0 19 19315.0 20 20180.0 21 21206.0 22 23384.0 23 26027.0 24 29659.0 25 33492.0 26 38852.0 27 44541.0 28 51567.0 29 60066.0 30 69626.0 31 81439.0 32 96441.0 33 116589.0 34 144328.0 35 183311.0 36 232207.0 37 256194.0 38 151205.0 39 15400.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.24250769408804 17.87889752006957 13.028655747726686 24.849939038115703 2 15.969360844085195 19.566230753210963 39.15002715132925 25.314381251374595 3 19.47265808409776 23.648936309968953 28.806846463035413 28.071559142897872 4 13.378270746454415 15.57463790010524 36.22088811236105 34.8262032410793 5 14.54924802902298 36.7170283753544 33.95413290878402 14.779590686838597 6 33.664794291786855 34.78228289599172 17.079387137835596 14.473535674385834 7 29.36253464221212 31.41133929127483 20.701251790496357 18.52487427601669 8 26.94139236909808 34.21971634186877 19.869788930015687 18.969102359017473 9 27.116550569007448 15.645722386245941 19.283497689479017 37.95422935526759 10-11 25.76620740802361 25.198464386597458 27.491692796564305 21.543635408814623 12-13 26.367727403198266 22.567417014921016 27.40217660995675 23.66267897192397 14-15 23.648553815452416 24.135435662684483 24.849242007959507 27.366768513903594 16-17 23.577038995662825 27.21365030637538 25.59104055733805 23.618270140623746 18-19 23.640823119766992 26.351098490655104 27.022188805590634 22.98588958398727 20-21 24.522237409187557 25.674193748623132 26.68004688350083 23.123521958688478 22-23 24.259596960526284 25.402613402024205 26.5244723406431 23.81331729680641 24-25 23.845429850068406 25.727868350513933 26.545663773634224 23.881038025783436 26-27 23.732185015148715 25.88077849819474 26.608092118602748 23.778944368053796 28-29 23.766302005365393 25.905984701115404 26.565451272315133 23.762262021204076 30-31 24.039082113518024 25.92280727713081 26.26709258395772 23.771018025393445 32-33 23.8047705297115 25.904786464725838 26.304694503879748 23.985748501682906 34-35 24.082659870912888 25.837871685489937 26.34137925396543 23.738089189631744 36-37 24.12083432643358 25.599129738616018 26.307586063595085 23.972449871355323 38-39 23.928183538558713 25.69117113463021 26.397582987082956 23.98306233972812 40-41 24.060956972267718 25.658704686332385 26.428975333060617 23.851363008339284 42-43 24.025735805958547 25.467012259728232 26.337874534282246 24.16937740003097 44-45 23.88071619122037 25.69231614482544 26.357082247223936 24.069885416730255 46-47 24.025431913007193 25.527631859433935 26.300805772042136 24.14613045551674 48-49 23.782216417759216 25.66848784542028 26.213742757951696 24.335552978868808 50-51 23.564529226526272 25.871531902904266 26.265981482647977 24.297957387921485 52-53 23.841179646409003 25.664003048787936 26.31458214749 24.18023515731306 54-55 23.66283967072656 25.561736815772605 26.47697157554058 24.298451937960255 56-57 23.682862151546992 25.615066485159225 26.369426253810506 24.332645109483273 58-59 23.548866576918464 25.389624486070268 26.48948356364988 24.572025373361388 60-61 23.541486550513117 25.348143155097713 26.65169565620894 24.458674638180227 62-63 23.354462833729713 25.37442190956639 26.671542079123306 24.59957317758059 64-65 23.400953683166996 25.30201717743691 26.542186396468654 24.754842742927444 66-67 23.376717307774538 25.395690924307118 26.45581884044691 24.771772927471428 68-69 23.523157240267082 25.083481525148976 26.499651519273403 24.89370971531054 70-71 23.2537049870709 24.92949594697812 26.659210027503477 25.157589038447504 72-73 23.143915726168625 24.94010426836412 26.639371070410434 25.27660893505682 74-75 23.108230255040684 25.036897343391274 26.585341212575553 25.269531188992488 76-77 23.057834561153445 24.876296788145574 26.803448487071346 25.262420163629635 78-79 23.078319647628692 24.86470064300443 26.648153344965163 25.408826364401715 80-81 22.999355670103093 24.825249921899406 26.632668502030615 25.542725905966883 82-83 22.92363441830134 24.67692085415117 26.79926627500825 25.60017845253924 84-85 22.9085433488346 24.634443070983266 26.786942817781025 25.670070762401114 86-87 22.817934270032104 24.59740815600942 26.909823770518805 25.67483380343967 88-89 22.890884780740098 24.349956533977103 26.871254396952573 25.887904288330233 90-91 22.792562947855842 24.25650346666875 26.95102779705264 25.999905788422762 92-93 22.87913013683252 24.145955987508678 26.98337353608144 25.99154033957737 94-95 22.855792128347268 23.993796828562704 27.090476828533415 26.059934214556606 96-97 22.858683260532594 23.836361741526098 27.050048361623396 26.25490663631791 98 22.918118790037116 23.700557029643818 26.944722666401134 26.43660151391793 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 99.0 1 72.5 2 85.0 3 126.0 4 121.5 5 128.5 6 213.0 7 425.0 8 631.0 9 732.0 10 726.0 11 715.5 12 811.0 13 918.5 14 1003.0 15 1127.0 16 1216.5 17 1197.0 18 1236.0 19 1321.0 20 1330.5 21 1369.0 22 1508.5 23 1674.5 24 1932.5 25 2378.0 26 3106.0 27 4211.5 28 5626.5 29 7678.0 30 10642.5 31 14550.5 32 18574.5 33 22510.0 34 27218.5 35 33188.0 36 39807.5 37 45634.5 38 50458.0 39 54612.5 40 59114.0 41 62971.5 42 67026.0 43 73156.5 44 78310.0 45 81981.5 46 86081.0 47 89306.5 48 91725.5 49 92463.5 50 91790.0 51 91623.0 52 90366.0 53 89106.5 54 86971.0 55 83410.0 56 77797.0 57 70459.0 58 63383.0 59 55529.5 60 46743.0 61 38339.0 62 30848.5 63 23223.5 64 16940.5 65 12735.5 66 9572.5 67 7221.0 68 5147.5 69 3542.0 70 2605.0 71 1886.5 72 1428.5 73 1130.5 74 875.5 75 634.5 76 444.5 77 261.0 78 127.0 79 70.0 80 48.5 81 33.0 82 17.0 83 10.5 84 9.0 85 8.5 86 8.0 87 6.5 88 6.0 89 3.5 90 4.0 91 4.0 92 2.0 93 4.5 94 5.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.36952768465803365 2 0.021842802845110205 3 0.016832093061042608 4 0.014302414335105566 5 0.019361771786979648 6 0.02203739351633613 7 0.014642948009750939 8 0.008026865188069452 9 0.0 10-11 7.297150170972229E-5 12-13 0.005205300455293523 14-15 0.003283717576937503 16-17 0.005448538794325931 18-19 0.03561009283434447 20-21 0.07635251462227276 22-23 0.09496024755825193 24-25 0.06292575830768385 26-27 0.07114721416697924 28-29 0.055142131458646805 30-31 0.051128698864612084 32-33 0.01821855159352733 34-35 0.324504268103135 36-37 0.49788455616543514 38-39 0.4509395567321805 40-41 0.4620555488259615 42-43 0.41292140434141517 44-45 0.3872111119056897 46-47 0.3859462725427211 48-49 0.3768978063307156 50-51 0.3736140887537781 52-53 0.4320885854571689 54-55 0.4334020724879439 56-57 0.4036783474581837 58-59 0.38998402897065915 60-61 0.40411617646844206 62-63 0.3846571093458494 64-65 0.4329885673115888 66-67 0.45410165513960177 68-69 0.39589472060914666 70-71 0.3556387754992832 72-73 0.3423336383542105 74-75 0.3244312966014253 76-77 0.3230448380689406 78-79 0.3221448562145206 80-81 0.33844182492969194 82-83 0.3343554208339475 84-85 0.3327257239624304 86-87 0.3207097500142294 88-89 0.36220621065315817 90-91 0.34133636116417765 92-93 0.3315338561011716 94-95 0.33895262544166 96-97 0.3390012731094665 98 0.3343554208339475 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2055597.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.92072749139625 #Duplication Level Percentage of deduplicated Percentage of total 1 73.05459175098433 38.66102142049046 2 12.023923030410447 12.726295081397494 3 5.368812066816625 8.523643210215674 4 2.9839517818498673 6.3165159637897235 5 1.8089979657187278 4.786674418814548 6 1.1446928915430226 3.6346788344812015 7 0.8130986781340502 3.0120841498402604 8 0.5645405956465394 2.390071921603282 9 0.4175444458710059 1.9887080251937 >10 1.7622247124514754 15.02311665982607 >50 0.04251381333886335 1.4971127310500862 >100 0.014737807051188814 1.2310390315929705 >500 1.852300919084783E-4 0.06749028972969508 >1k 1.8523009190844715E-4 0.14154826197482598 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 4.8647667806481524E-5 6 0.0 0.0 0.0 0.0 4.8647667806481524E-5 7 0.0 0.0 0.0 0.0 4.8647667806481524E-5 8 0.0 0.0 0.0 0.0 4.8647667806481524E-5 9 0.0 0.0 0.0 0.0 4.8647667806481524E-5 10-11 0.0 0.0 0.0 0.0 4.8647667806481524E-5 12-13 0.0 0.0 0.0 4.8647667806481524E-5 4.8647667806481524E-5 14-15 0.0 0.0 0.0 4.8647667806481524E-5 4.8647667806481524E-5 16-17 0.0 0.0 0.0 4.8647667806481524E-5 4.8647667806481524E-5 18-19 0.0 0.0 0.0 4.8647667806481524E-5 4.8647667806481524E-5 20-21 0.0 0.0 0.0 1.4594300341944457E-4 9.729533561296305E-5 22-23 0.0 0.0 0.0 6.810673492907413E-4 9.729533561296305E-5 24-25 0.0 0.0 0.0 0.0018729352105495388 9.729533561296305E-5 26-27 0.0 0.0 0.0 0.003453984414260188 9.729533561296305E-5 28-29 0.0 0.0 0.0 0.0096079143917801 9.729533561296305E-5 30-31 0.0 0.0 0.0 0.03363986228818197 9.729533561296305E-5 32-33 0.0 0.0 0.0 0.0818740249183084 9.729533561296305E-5 34-35 0.0 0.0 0.0 0.15343474426164272 9.729533561296305E-5 36-37 0.0 0.0 0.0 0.2684135071222618 9.729533561296305E-5 38-39 0.0 0.0 0.0 0.44690180030424254 9.729533561296305E-5 40-41 0.0 0.0 0.0 0.6493004222131089 9.729533561296305E-5 42-43 0.0 0.0 0.0 0.8582178316080438 9.729533561296305E-5 44-45 0.0 0.0 0.0 1.1101397793439083 9.729533561296305E-5 46-47 0.0 0.0 0.0 1.414893094317612 9.729533561296305E-5 48-49 0.0 0.0 0.0 1.7417567743093612 9.729533561296305E-5 50-51 0.0 0.0 0.0 2.085720109535089 9.729533561296305E-5 52-53 0.0 0.0 0.0 2.4343536208702385 9.729533561296305E-5 54-55 0.0 0.0 0.0 2.8302483414793853 9.729533561296305E-5 56-57 0.0 0.0 0.0 3.2958308462213166 9.729533561296305E-5 58-59 0.0 0.0 0.0 3.788534425765362 9.729533561296305E-5 60-61 0.0 0.0 0.0 4.306923973911228 9.729533561296305E-5 62-63 0.0 0.0 0.0 4.827964819952549 9.729533561296305E-5 64-65 0.0 0.0 0.0 5.388872429761281 9.729533561296305E-5 66-67 0.0 0.0 0.0 6.029100061928482 9.729533561296305E-5 68-69 0.0 0.0 0.0 6.736680390173754 9.729533561296305E-5 70-71 0.0 0.0 0.0 7.492227318876219 9.729533561296305E-5 72-73 0.0 0.0 0.0 8.239747382390615 9.729533561296305E-5 74-75 0.0 0.0 0.0 9.004294129637278 9.729533561296305E-5 76-77 0.0 0.0 0.0 9.832009873530659 9.729533561296305E-5 78-79 0.0 0.0 0.0 10.742183414356024 9.729533561296305E-5 80-81 0.0 4.8647667806481524E-5 0.0 11.68507251178125 9.729533561296305E-5 82-83 0.0 4.8647667806481524E-5 0.0 12.646374751471226 9.729533561296305E-5 84-85 0.0 4.8647667806481524E-5 0.0 13.608212115507076 9.729533561296305E-5 86 0.0 4.8647667806481524E-5 4.8647667806481524E-5 14.338462256950171 9.729533561296305E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2675 0.0 40.777565 1 GTATCAA 4540 0.0 36.29309 1 TCAACGC 5585 0.0 28.91187 4 ATCAACG 5600 0.0 28.752512 3 TATCAAC 5705 0.0 28.464548 2 CAACGCA 5740 0.0 27.891396 5 AACGCAG 6000 0.0 26.678871 6 GTACATG 7390 0.0 23.791164 1 ACGCAGA 6885 0.0 23.044662 7 TACATGG 7585 0.0 22.8004 2 CGCAGAG 7020 0.0 22.533428 8 ACATGGG 7550 0.0 21.630161 3 GTATAGG 515 0.0 21.448689 1 GTATTAG 540 0.0 19.603374 1 GACCGCG 285 3.0468073E-9 19.307878 7 CATGGGG 5000 0.0 19.083147 4 GCAGAGT 7820 0.0 18.996012 9 GAGTACA 5450 0.0 18.325676 1 AGAGTAC 6070 0.0 17.601065 10-11 GTATATA 665 0.0 17.30275 1 >>END_MODULE