##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920867_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3616703 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.235387589193806 31.0 30.0 34.0 27.0 34.0 2 30.24325276363583 31.0 30.0 34.0 26.0 34.0 3 30.386568927556397 31.0 30.0 34.0 27.0 34.0 4 34.028366996128796 35.0 35.0 37.0 30.0 37.0 5 33.55453157198697 35.0 35.0 37.0 28.0 37.0 6 33.49371070834404 35.0 35.0 37.0 28.0 37.0 7 33.31175327363071 35.0 33.0 37.0 27.0 37.0 8 33.24363349713814 35.0 33.0 37.0 27.0 37.0 9 34.573884833783694 38.0 34.0 39.0 27.0 39.0 10-11 34.38261076455545 37.5 34.0 39.0 27.0 39.0 12-13 34.20342007624071 37.0 34.0 39.0 26.0 39.0 14-15 35.0962102777032 38.0 34.0 40.0 26.0 41.0 16-17 34.968681835362204 38.0 34.0 40.0 25.5 41.0 18-19 34.882655694979654 38.0 34.0 40.0 25.0 41.0 20-21 34.771368702378936 38.0 34.0 40.0 25.0 41.0 22-23 34.62633398429453 38.0 33.5 40.0 24.5 41.0 24-25 34.46153444172773 38.0 33.0 40.0 24.0 41.0 26-27 34.28334701522354 38.0 33.0 40.0 23.0 41.0 28-29 34.225922753402756 38.0 33.0 40.0 23.5 41.0 30-31 34.216439530699645 38.0 33.0 40.0 23.0 41.0 32-33 34.073551795654765 38.0 33.0 40.0 22.5 41.0 34-35 33.905001046533265 38.0 33.0 40.0 21.5 41.0 36-37 33.71893641805811 38.0 33.0 40.0 19.5 41.0 38-39 33.542466163243155 38.0 32.0 40.0 18.5 41.0 40-41 33.32420383979553 38.0 32.0 40.0 17.0 41.0 42-43 33.360637298666774 38.0 32.0 40.0 17.0 41.0 44-45 33.22765319684807 38.0 32.0 40.0 15.5 41.0 46-47 32.99244367038156 38.0 32.0 40.0 14.5 41.0 48-49 32.738607787258175 37.0 31.0 40.0 12.5 41.0 50-51 32.492816109036326 37.0 31.0 40.0 9.0 41.0 52-53 32.238618847054894 37.0 31.0 40.0 8.5 41.0 54-55 31.966678353185205 36.5 30.5 40.0 7.5 41.0 56-57 31.648858366307657 36.0 30.0 39.0 6.5 41.0 58-59 31.324957426694976 36.0 29.5 39.0 2.0 40.5 60-61 30.996200545082083 35.0 29.0 39.0 2.0 40.0 62-63 30.674142858841325 35.0 29.0 39.0 2.0 40.0 64-65 30.275574881321468 35.0 28.0 38.5 2.0 40.0 66-67 29.839998888490427 34.5 28.0 38.0 2.0 40.0 68-69 29.394829351483935 34.0 28.0 37.5 2.0 40.0 70-71 28.966444853226818 34.0 27.0 37.0 2.0 39.0 72-73 28.51584537077001 34.0 26.0 36.0 2.0 39.0 74-75 28.06499690463939 33.5 26.0 36.0 2.0 38.5 76-77 26.604369089748317 31.5 24.5 34.5 2.0 36.5 78-79 27.439880742211898 33.0 26.0 35.0 2.0 37.0 80-81 27.457629227503613 33.0 26.0 35.0 2.0 37.0 82-83 27.104756597376117 33.0 26.0 35.0 2.0 36.0 84-85 26.775803680866247 33.0 25.0 35.0 2.0 36.0 86-87 26.223892589466153 32.5 24.0 35.0 2.0 35.0 88-89 25.850647952015965 32.0 23.0 35.0 2.0 35.0 90-91 25.48386486255576 32.0 20.5 34.5 2.0 35.0 92-93 25.16357301110984 32.0 19.5 34.0 2.0 35.0 94-95 24.76708289289997 32.0 17.5 34.0 2.0 35.0 96-97 24.22288006507584 32.0 6.0 34.0 2.0 35.0 98-99 23.620662658780663 31.0 2.0 34.0 2.0 35.0 100-101 21.444307287604207 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 84569.0 3 38326.0 4 20487.0 5 14326.0 6 12168.0 7 12404.0 8 13641.0 9 16193.0 10 18337.0 11 20547.0 12 22777.0 13 24808.0 14 27132.0 15 28830.0 16 30273.0 17 31464.0 18 30581.0 19 30097.0 20 30120.0 21 31851.0 22 34408.0 23 38438.0 24 45565.0 25 52850.0 26 62445.0 27 74077.0 28 87559.0 29 102782.0 30 120323.0 31 143367.0 32 171708.0 33 209661.0 34 262294.0 35 338903.0 36 452360.0 37 540178.0 38 319216.0 39 21638.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.60497400944331 19.709886383940013 14.031687287826891 24.653452318789796 2 15.839896170628332 20.797892445135805 38.54518880870229 24.817022575533574 3 19.1107290127335 24.66590050349972 29.406922236282067 26.816448247484715 4 13.64930545569584 17.01202151217969 36.50917652420341 32.82949650792106 5 14.35804556621812 37.15193854823524 34.39954984038413 14.090466045162511 6 32.95829974933792 35.852705024756204 17.295794545663902 13.893200680241982 7 28.710499340721167 31.59626329287209 21.16002616071562 18.53321120569112 8 26.187154124483346 35.05327763336019 20.18941312935848 18.57015511279798 9 26.256654063460903 15.95294495523347 19.637022136139542 38.15337884516609 10-11 25.339850317348645 25.75178002992103 27.950999160002212 20.957370492728117 12-13 26.07654773936255 22.8135415965983 27.75845159490143 23.35145906913772 14-15 23.21220957592521 24.514723419615798 25.187239998272652 27.085827006186335 16-17 23.327814509986315 27.586235995547682 25.806968824089445 23.278980670376562 18-19 23.36995404482342 26.77002834236918 27.205090972986547 22.654926639820854 20-21 24.286742634047577 26.03702113270643 26.803070503897597 22.8731657293484 22-23 23.79009098920336 25.97327288140964 26.646992303255097 23.589643826131905 24-25 23.629727216667167 26.062467856296102 26.79508840054589 23.512716526490838 26-27 23.513469469516 26.330858180317087 26.694148999452732 23.461523350714188 28-29 23.552215558609603 26.337162448020386 26.667915085570403 23.442706907799607 30-31 23.92013489602088 26.210457815677874 26.395574782165713 23.473832506135533 32-33 23.673122415840304 26.135619688029742 26.36034425868135 23.8309136374486 34-35 23.913766414061975 26.15948456751501 26.440237362217978 23.48651165620504 36-37 24.030979667190795 25.960025227778043 26.380492804538235 23.628502300492926 38-39 23.790650967259342 26.02952164545897 26.449692792287095 23.730134594994592 40-41 23.953410805911915 25.89384363202009 26.528720894890423 23.624024667177572 42-43 23.87351967746525 25.842959955124538 26.402907668634505 23.8806126987757 44-45 23.730495934110536 25.887792375169482 26.532692710576843 23.84901898014314 46-47 23.76989532524682 25.824999965426493 26.367485966613053 24.037618742713633 48-49 23.637796505771984 25.815021461304326 26.470370680173684 24.076811352750013 50-51 23.6434746815079 25.8917965461252 26.468944868446105 23.995783903920795 52-53 23.703888045525055 25.863328051940154 26.50461638006122 23.928167522473572 54-55 23.522930411601056 25.772231588107758 26.557256101717343 24.14758189857384 56-57 23.510783994655633 25.900265365820207 26.400885161054134 24.18806547847003 58-59 23.333612603779386 25.854595215461295 26.564688712994595 24.247103467764724 60-61 23.42385545444074 25.877188433777725 26.542314386646705 24.156641725134833 62-63 23.235222384571397 25.966458427120397 26.547666319723657 24.25065286858455 64-65 23.10502969971783 25.773642290219257 26.447590778632684 24.67373723143023 66-67 23.085672367904962 25.868200101902005 26.353617659473592 24.692509870719437 68-69 23.244981282291057 25.76471118936255 26.30765897045544 24.68264855789095 70-71 23.02184506294387 25.533861368614353 26.39473494988827 25.049558618553508 72-73 23.03066833338082 25.56663071557969 26.36131202012007 25.041388930919418 74-75 22.962748033045337 25.686721841851618 26.258744442147552 25.091785682955496 76-77 22.985173868624713 25.457724793608786 26.45385722766975 25.103244110096746 78-79 22.876905522131434 25.53787412239479 26.409436427435786 25.175783928037998 80-81 22.883253523416993 25.54413715137779 26.32460678544683 25.248002539758392 82-83 22.853305857683544 25.467640481564963 26.36586692505281 25.313186735698682 84-85 22.712766700260783 25.495833550526747 26.30272839633002 25.48867135288245 86-87 22.694207659362135 25.43698282672876 26.326181268798425 25.542628245110677 88-89 22.607283155242808 25.370286717702573 26.291445575138937 25.730984551915682 90-91 22.500964803523864 25.392963366299306 26.298797433400832 25.807274396776002 92-93 22.531106826117274 25.26678156419171 26.28791458772165 25.914197021969365 94-95 22.349138023399224 25.2219279204824 26.392193235828042 26.036740820290333 96-97 22.413396937087697 25.108030895674837 26.352556768065106 26.126015399172363 98-99 22.23592145629095 25.099907785936182 26.299492477019065 26.364678280753807 100-101 22.345122496649065 24.988638963757364 26.343197998632668 26.323040540960907 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 72.0 1 53.0 2 59.5 3 80.5 4 73.0 5 84.5 6 144.5 7 300.5 8 444.0 9 460.0 10 407.0 11 387.5 12 407.0 13 433.0 14 492.0 15 556.0 16 602.0 17 675.0 18 786.5 19 900.0 20 1048.5 21 1257.5 22 1498.5 23 1832.5 24 2252.5 25 2803.5 26 3652.0 27 4989.0 28 6782.5 29 9437.5 30 13511.0 31 19391.5 32 27152.5 33 35349.0 34 44025.0 35 53826.5 36 65195.0 37 75900.0 38 85408.5 39 95664.0 40 106157.5 41 115012.0 42 122408.5 43 131416.5 44 139610.5 45 145850.0 46 153218.0 47 160150.5 48 165491.5 49 168730.5 50 166904.0 51 162455.5 52 158254.5 53 153872.0 54 147062.0 55 136615.5 56 123873.0 57 109715.5 58 97352.5 59 84992.0 60 71243.5 61 58586.5 62 47225.0 63 36360.5 64 26558.5 65 19312.5 66 14180.0 67 10550.0 68 7614.5 69 5181.0 70 3615.0 71 2693.0 72 1899.5 73 1394.0 74 1026.0 75 707.0 76 468.5 77 265.5 78 155.0 79 73.5 80 33.0 81 22.0 82 15.0 83 10.0 84 5.0 85 3.5 86 3.0 87 1.0 88 0.0 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18630227585732087 2 0.0 3 0.011474539103708542 4 0.014350086252589721 5 0.005751094297762354 6 0.10703118282037537 7 0.14325201709955174 8 0.1242291667300301 9 0.14344556354226487 10-11 0.11594814393108863 12-13 0.11502188595524708 14-15 0.11687440190693014 16-17 0.06652467730969339 18-19 0.07895312388105963 20-21 0.03692589632048858 22-23 0.08384708393252087 24-25 0.057400345010358886 26-27 0.06583344001428926 28-29 0.04046503127295772 30-31 0.024359202290041508 32-33 0.03223930745764858 34-35 0.019644963935385347 36-37 0.023432944314199976 38-39 0.03186603931813035 40-41 0.024497449749122338 42-43 0.01306438488313804 44-45 0.02628084197126499 46-47 0.033677081032089176 48-49 0.008585167208919284 50-51 0.01552518965477674 52-53 0.006442331593166484 54-55 0.012345498095917748 56-57 0.005142805477806721 58-59 0.003787980378814627 60-61 0.023405294822383814 62-63 0.009815569594738633 64-65 0.007036795667214035 66-67 0.04050650551068197 68-69 0.09069033315702174 70-71 0.021649552092057323 72-73 0.04440508385676126 74-75 0.08632171345006764 76-77 0.24190540389962906 78-79 0.0819116195053893 80-81 0.016893839499676915 82-83 0.011336291644627718 84-85 0.013672673703093673 86-87 0.2586056969565928 88-89 0.6275743404974088 90-91 0.26961019469942654 92-93 0.35701023833032464 94-95 0.0012304023858193498 96-97 0.0040091763133439495 98-99 0.00326264003430749 100-101 0.004852485813736987 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3616703.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.41429309865647 #Duplication Level Percentage of deduplicated Percentage of total 1 70.03472414018334 35.30751109886755 2 13.687846352686556 13.801261958274319 3 6.0297687429697335 9.119595861755807 4 3.2175654329596806 6.488451472053394 5 1.9668159526840985 4.957781795486469 6 1.2539799712482387 3.7931108286212107 7 0.8510361277247837 3.0033069346464023 8 0.6169197160984112 2.488125710858019 9 0.42876003564017257 1.9454070695178647 >10 1.835507643566511 15.24065189088514 >50 0.05977836096817879 2.0273437278883084 >100 0.016471524705687527 1.3687774329085265 >500 4.955991444575649E-4 0.18316986618779327 >1k 3.3039942015510173E-4 0.27550435204916246 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9354644271315615E-4 2 0.0 0.0 0.0 0.0 1.9354644271315615E-4 3 0.0 0.0 0.0 2.7649491816165165E-5 1.9354644271315615E-4 4 0.0 0.0 0.0 2.7649491816165165E-5 1.9354644271315615E-4 5 0.0 0.0 0.0 2.7649491816165165E-5 1.9354644271315615E-4 6 0.0 0.0 0.0 2.7649491816165165E-5 3.0414440997781684E-4 7 0.0 0.0 0.0 2.7649491816165165E-5 3.0414440997781684E-4 8 0.0 0.0 0.0 2.7649491816165165E-5 3.0414440997781684E-4 9 0.0 0.0 0.0 2.7649491816165165E-5 3.5944339361014717E-4 10-11 0.0 0.0 0.0 1.1059796726466066E-4 4.4239186905864264E-4 12-13 0.0 0.0 0.0 1.3824745908082582E-4 4.97690852690973E-4 14-15 0.0 0.0 0.0 1.3824745908082582E-4 5.944640740475511E-4 16-17 0.0 0.0 0.0 1.3824745908082582E-4 6.082888199556337E-4 18-19 0.0 0.0 0.0 1.520722049889084E-4 6.359383117717988E-4 20-21 0.0 0.0 0.0 1.7972169680507358E-4 6.497630576798813E-4 22-23 0.0 0.0 0.0 3.456186477020646E-4 6.912372954041291E-4 24-25 1.3824745908082582E-5 0.0 0.0 7.050620413122117E-4 6.912372954041291E-4 26-27 2.7649491816165165E-5 0.0 0.0 0.0015760210335214143 6.912372954041291E-4 28-29 2.7649491816165165E-5 0.0 0.0 0.005364001412336042 6.912372954041291E-4 30-31 4.147423772424775E-5 0.0 0.0 0.022437562608818032 6.912372954041291E-4 32-33 5.529898363233033E-5 0.0 0.0 0.06122979962689776 9.95381705381946E-4 34-35 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.11464861781572885 0.0010092064512900287 36-37 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.20499333232504852 0.0010230311971981111 38-39 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.3551991966163658 0.0010230311971981111 40-41 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.5334139961174583 0.0010506806890142762 42-43 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.7203107360488268 0.0011059796726466066 44-45 5.529898363233033E-5 2.7649491816165165E-5 0.0 0.9514466628860595 0.0011059796726466066 46-47 5.529898363233033E-5 2.7649491816165165E-5 0.0 1.225052209152922 0.0011336291644627717 48-49 5.529898363233033E-5 2.7649491816165165E-5 0.0 1.5176253068056735 0.0011751034021870196 50-51 5.529898363233033E-5 2.7649491816165165E-5 0.0 1.830576079926939 0.0012165776399112674 52-53 5.529898363233033E-5 2.7649491816165165E-5 0.0 2.150176555829992 0.0012165776399112674 54-55 5.529898363233033E-5 2.7649491816165165E-5 0.0 2.5148595281393025 0.0012304023858193498 56-57 5.529898363233033E-5 2.7649491816165165E-5 0.0 2.936113360704487 0.0012442271317274324 58-59 5.529898363233033E-5 2.7649491816165165E-5 0.0 3.3930626872043406 0.0012442271317274324 60-61 5.529898363233033E-5 2.7649491816165165E-5 0.0 3.8750209790519152 0.0012442271317274324 62-63 5.529898363233033E-5 2.7649491816165165E-5 0.0 4.368785603904993 0.0012442271317274324 64-65 5.529898363233033E-5 2.7649491816165165E-5 0.0 4.896918547085564 0.0012442271317274324 66-67 5.529898363233033E-5 2.7649491816165165E-5 0.0 5.501018469031049 0.0012442271317274324 68-69 5.529898363233033E-5 2.7649491816165165E-5 0.0 6.162048694626018 0.001258051877635515 70-71 5.529898363233033E-5 2.7649491816165165E-5 0.0 6.8706360461447895 0.0012857013694516802 72-73 5.529898363233033E-5 2.7649491816165165E-5 0.0 7.585707203494453 0.0012995261153597628 74-75 5.529898363233033E-5 2.7649491816165165E-5 0.0 8.329616780808376 0.0013133508612678453 76-77 5.529898363233033E-5 2.7649491816165165E-5 0.0 9.137203137774929 0.0013824745908082583 78-79 5.529898363233033E-5 2.7649491816165165E-5 0.0 10.018945431792437 0.0014654230662567538 80-81 5.529898363233033E-5 2.7649491816165165E-5 0.0 10.94173339641104 0.0014654230662567538 82-83 5.529898363233033E-5 2.7649491816165165E-5 0.0 11.871295486524605 0.0015068973039810015 84-85 5.529898363233033E-5 2.7649491816165165E-5 0.0 12.812608610660039 0.0015621962876133317 86-87 5.529898363233033E-5 2.7649491816165165E-5 0.0 13.789866074156489 0.0015760210335214143 88-89 5.529898363233033E-5 2.7649491816165165E-5 0.0 14.829459316952484 0.0016036705253375796 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3205 0.0 44.36146 1 GTATCAA 5595 0.0 40.879696 1 TCAACGC 6910 0.0 31.941929 4 CAACGCA 7135 0.0 30.930796 5 ATCAACG 7210 0.0 30.8762 3 TATCAAC 7400 0.0 30.21088 2 AACGCAG 7660 0.0 28.872826 6 GTACATG 10430 0.0 24.299961 1 ACGCAGA 9100 0.0 23.834219 7 TACATGG 10930 0.0 22.451462 2 CGCAGAG 9460 0.0 22.422417 8 ACATGGG 11185 0.0 21.133898 3 GCAGAGT 10955 0.0 18.366207 9 AGAGTAC 8925 0.0 17.704023 10-11 CATGGGG 7550 0.0 17.666302 4 GTATAGC 1315 0.0 17.357138 1 CAGAGTA 9740 0.0 16.588003 10-11 GAGTACA 8145 0.0 16.17154 1 ATACCGA 270 9.5636005E-6 15.820161 6 AGTACAT 7870 0.0 15.560344 2 >>END_MODULE