FastQCFastQC Report
Mon 15 Aug 2016
SRR2920866_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920866_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2633983
Sequences flagged as poor quality0
Sequence length101
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA35800.040.777821
GTATCAA59100.035.0806541
TCAACGC71200.028.937954
ATCAACG71900.028.7882733
CAACGCA71900.028.5869275
TATCAAC73800.028.3676762
AACGCAG74400.027.6901456
GTACATG98450.024.2952251
TACATGG99800.023.308112
ACGCAGA88550.023.1045327
CGCAGAG91600.022.0213628
TAAGGTG13100.021.7414465
ACATGGG104500.021.624633
CATGGGG64500.019.5785244
GTAAGGT10950.019.0764064
GCAGAGT101450.018.9007939
TAAGGCG9200.018.5747575
GTATATA8350.017.0845451
AGAGTAC87650.017.02808210-11
ACCGTGC5400.016.6997728
Produced by FastQC (version 0.11.5)