##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920865_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3870154 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.364066649544178 31.0 30.0 34.0 27.0 34.0 2 30.375443716193207 31.0 30.0 34.0 26.0 34.0 3 30.51444722871493 31.0 30.0 34.0 27.0 34.0 4 34.16399140706029 35.0 35.0 37.0 30.0 37.0 5 33.707026645451315 35.0 35.0 37.0 28.0 37.0 6 33.65776193918898 35.0 35.0 37.0 28.0 37.0 7 33.47218896198962 35.0 35.0 37.0 28.0 37.0 8 33.40376817046557 35.0 35.0 37.0 27.0 37.0 9 34.75014172562642 38.0 35.0 39.0 27.0 39.0 10-11 34.56042963665011 38.0 34.0 39.0 27.0 39.0 12-13 34.39500495329126 37.0 34.0 39.0 27.0 39.0 14-15 35.31251740886797 38.0 34.0 40.0 27.0 41.0 16-17 35.19778618628612 38.0 34.0 40.0 26.5 41.0 18-19 35.10412802694673 38.5 34.0 40.0 26.0 41.0 20-21 34.98271412455422 38.0 34.0 40.0 25.0 41.0 22-23 34.84444856716296 38.0 34.0 40.0 25.0 41.0 24-25 34.67408596660495 38.0 34.0 40.0 24.5 41.0 26-27 34.49883402572611 38.0 33.0 40.0 24.0 41.0 28-29 34.44632965509899 38.0 33.5 40.0 24.0 41.0 30-31 34.43536006577516 38.0 33.0 40.0 24.0 41.0 32-33 34.29655473658154 38.0 33.0 40.0 23.5 41.0 34-35 34.1385851829152 38.0 33.0 40.0 23.0 41.0 36-37 33.95564259200022 38.0 33.0 40.0 22.0 41.0 38-39 33.77619714874395 38.0 33.0 40.0 21.0 41.0 40-41 33.54922271826909 38.0 32.0 40.0 19.0 41.0 42-43 33.589172420528996 38.0 33.0 40.0 19.0 41.0 44-45 33.453472781703255 38.0 32.0 40.0 18.0 41.0 46-47 33.21921659964952 38.0 32.0 40.0 16.5 41.0 48-49 32.96335662611875 37.0 32.0 40.0 15.0 41.0 50-51 32.70178240969223 37.0 31.0 40.0 13.5 41.0 52-53 32.441699348398025 37.0 31.0 40.0 10.5 41.0 54-55 32.163361716355475 36.5 31.0 40.0 8.5 41.0 56-57 31.833215293241558 36.0 30.5 39.0 8.0 41.0 58-59 31.503113312803574 36.0 30.0 39.0 7.0 40.5 60-61 31.167314789023898 35.0 29.5 39.0 4.0 40.0 62-63 30.8426689222186 35.0 29.0 39.0 2.0 40.0 64-65 30.436223984885356 35.0 29.0 38.0 2.0 40.0 66-67 30.001783779146773 34.5 28.5 38.0 2.0 40.0 68-69 29.557095660792825 34.0 28.0 37.0 2.0 39.5 70-71 29.131565694801807 34.0 27.5 36.5 2.0 39.0 72-73 28.697713450162446 34.0 26.5 36.0 2.0 39.0 74-75 28.2613753871293 33.5 26.0 35.5 2.0 38.5 76-77 26.801574691859805 31.5 25.0 34.5 2.0 36.0 78-79 27.65350965362102 33.0 26.0 35.0 2.0 37.0 80-81 27.691686558209312 33.0 26.0 35.0 2.0 36.5 82-83 27.37023294163488 33.0 26.0 35.0 2.0 36.0 84-85 27.058434496405052 33.0 25.5 35.0 2.0 36.0 86-87 26.53248617496875 33.0 25.0 35.0 2.0 35.0 88-89 26.179817521473304 32.5 24.0 35.0 2.0 35.0 90-91 25.832321530357707 32.0 23.0 35.0 2.0 35.0 92-93 25.53904715419593 32.0 22.0 35.0 2.0 35.0 94-95 25.162853338652674 32.0 19.5 34.0 2.0 35.0 96-97 24.647114300877952 32.0 16.5 34.0 2.0 35.0 98-99 24.067115546306425 32.0 2.0 34.0 2.0 35.0 100-101 21.87563686096212 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 82152.0 3 37820.0 4 20386.0 5 14548.0 6 12824.0 7 12549.0 8 14346.0 9 16713.0 10 18847.0 11 20997.0 12 22705.0 13 25247.0 14 27574.0 15 29517.0 16 30648.0 17 31987.0 18 31713.0 19 30594.0 20 31289.0 21 32507.0 22 35227.0 23 40166.0 24 47181.0 25 55238.0 26 65973.0 27 78647.0 28 92617.0 29 109712.0 30 130224.0 31 153423.0 32 185437.0 33 226182.0 34 286588.0 35 373816.0 36 498533.0 37 583865.0 38 337852.0 39 24510.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.78460027859516 18.792488544385602 13.63664015586004 24.7862710211592 2 16.151941240581124 20.171755439189244 38.03784035467322 25.638462965556407 3 19.52288941543978 23.896721828744734 28.931832447933616 27.648556307881872 4 14.023494120526179 16.050835618424305 35.32475426065775 34.60091600039177 5 14.86157890031107 36.73855733207782 33.72728405021579 14.672579717395315 6 34.323586432023674 34.620610628774074 16.684208416159795 14.37159452304246 7 29.946349299337477 31.205953069739184 20.292742276876325 18.554955354047014 8 27.17631819342481 34.3392456097732 19.517005847081776 18.967430349720217 9 26.893837853055302 15.761773512611096 19.105429358924333 38.238959275409265 10-11 26.117183132694056 25.109869372565623 27.1060786237621 21.666868870978213 12-13 26.651583640176174 22.287047101777315 27.193307626999825 23.868061631046682 14-15 23.731205116660306 23.92995583015674 24.488038417377275 27.85080063580568 16-17 23.936167393369168 27.00177591465681 25.27942182000161 23.782634871972416 18-19 24.03625379518504 26.178585808225396 26.594921582768976 23.190238813820592 20-21 24.77259979373076 25.383963212733896 26.28459468611146 23.558842307423884 22-23 24.45056333994286 25.194726773500943 26.229524094605683 24.125185791950514 24-25 24.207131287512425 25.45901700800308 26.229463905984794 24.104387798499697 26-27 23.99249709669083 25.63492394900725 26.236748945300143 24.135830009001776 28-29 24.12660648495315 25.71906187663447 26.156724741684172 23.99760689672821 30-31 24.30154653629782 25.538550723439073 25.934598822969036 24.225303917294074 32-33 24.01816206648689 25.612344250096214 25.870657696430264 24.498835986986627 34-35 24.39134007461995 25.555336884929098 25.964993259187192 24.08832978126376 36-37 24.530605736213968 25.30791560724297 25.966700971404734 24.19477768513833 38-39 24.264959407801044 25.542612116403074 25.9145974251545 24.277831050641385 40-41 24.41773884492661 25.37112073577506 26.10523396668998 24.10590645260835 42-43 24.322506644979956 25.253172088797164 25.936528376399888 24.487792889822995 44-45 24.14229852352178 25.299387675006535 26.118776032341323 24.43953776913036 46-47 24.293621609494224 25.33931066872431 25.910515991047955 24.456551730733516 48-49 24.07714292359096 25.357470483199517 25.928606682980902 24.636779910228615 50-51 23.980305534271498 25.517344748766995 26.045355933342208 24.456993783619303 52-53 24.198639805947924 25.319550509071448 26.058357229367562 24.423452455613067 54-55 23.886219145556943 25.22893235706522 26.16275103354212 24.722097463835716 56-57 23.827809416905072 25.393542465531482 26.04719525047452 24.731452867088922 58-59 23.81709055743504 25.247076713774735 26.082257052805524 24.853575675984704 60-61 23.7655557785381 25.3088606184927 26.17194521486852 24.753638388100676 62-63 23.62079618335583 25.393128872467656 26.07515607448162 24.910918869694896 64-65 23.50595540260258 25.321511118082313 26.004489275468977 25.16804420384613 66-67 23.464001821874543 25.299408588711565 25.931726750872357 25.304862838541535 68-69 23.63441009826609 25.150207777080073 25.94327277090935 25.272109353744487 70-71 23.43766172964676 24.9972184923673 25.989567375738975 25.575552402246966 72-73 23.41371929625015 24.969509515512794 25.92811793962393 25.68865324861313 74-75 23.312985769635993 25.167838953222844 25.806532116203517 25.712643160937642 76-77 23.267783768929657 24.822379548774187 26.07708966512703 25.832747017169122 78-79 23.19366144280556 24.899348678829387 26.008627219158313 25.898362659206743 80-81 23.209074382350217 24.924457030668023 25.942434480647496 25.924034106334265 82-83 23.091921217362383 24.747406815057612 26.123349537387874 26.037322430192127 84-85 22.937736247418673 24.718118243682387 26.006668873602283 26.337476635296653 86-87 22.835511348770364 24.781166569349796 26.101148580840267 26.282173501039573 88-89 22.767451658565506 24.56115491917409 25.96398501869543 26.70740840356497 90-91 22.64727309280231 24.586051881083055 26.004662292119185 26.762012733995455 92-93 22.669581896052122 24.46772732682679 26.047697294639814 26.81499348248127 94-95 22.433008433343307 24.294090561673375 26.191683242405777 27.081217762577538 96-97 22.45988662272437 24.070985022091087 26.309835440547214 27.15929291463733 98-99 22.33231038678129 24.129790225113272 26.128638037513667 27.409261350591773 100-101 22.385542234052902 23.917606196731736 26.257711450628047 27.439140118587314 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 36.0 1 29.5 2 47.5 3 74.0 4 65.5 5 74.0 6 149.0 7 331.0 8 478.5 9 482.5 10 436.5 11 410.0 12 420.5 13 461.0 14 523.0 15 586.0 16 662.0 17 728.5 18 820.5 19 925.0 20 1030.0 21 1223.0 22 1454.5 23 1758.5 24 2121.0 25 2593.0 26 3293.5 27 4292.5 28 5678.5 29 8025.5 30 11820.5 31 17050.0 32 23884.0 33 30928.5 34 38024.5 35 47005.0 36 58221.0 37 69516.0 38 79526.0 39 88451.0 40 96917.0 41 105831.0 42 115481.5 43 126057.5 44 135990.0 45 145421.5 46 154476.0 47 162529.5 48 170030.5 49 174621.0 50 174304.0 51 173976.0 52 174140.5 53 173863.0 54 172323.0 55 164211.0 56 151634.5 57 136959.0 58 123865.0 59 110661.5 60 94409.0 61 79103.0 62 64644.5 63 49247.0 64 35880.5 65 26504.0 66 19856.5 67 15240.5 68 11196.0 69 7977.5 70 5664.0 71 4087.5 72 2958.5 73 2190.0 74 1616.5 75 1064.0 76 698.5 77 417.5 78 215.0 79 112.5 80 67.0 81 37.5 82 21.0 83 10.5 84 6.0 85 4.0 86 4.0 87 3.0 88 1.0 89 1.0 90 0.5 91 0.5 92 1.5 93 1.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18606494728633538 2 0.0 3 0.013617029193153555 4 0.013048576361560807 5 0.0076482744614297 6 0.10694664863465382 7 0.14278501579006933 8 0.12420694370301544 9 0.14113133482543588 10-11 0.11438821297550435 12-13 0.11472411692144549 14-15 0.11646823356383233 16-17 0.06639270685352572 18-19 0.07966091271820191 20-21 0.036794401463094234 22-23 0.08427313228362489 24-25 0.05862815794927023 26-27 0.06678028832961169 28-29 0.03971418191627517 30-31 0.023952535222112607 32-33 0.03129074450267354 34-35 0.02101983538639548 36-37 0.023564953746026643 38-39 0.0305930978457188 40-41 0.023978373987185008 42-43 0.01300981821395221 44-45 0.02709194517840892 46-47 0.034042572982883886 48-49 0.008371759883456835 50-51 0.013927094374022325 52-53 0.006847272744185374 54-55 0.011679121812723731 56-57 0.005413221282667305 58-59 0.0039145729084682414 60-61 0.02306109782711489 62-63 0.009482826781569932 64-65 0.0068343533616491755 66-67 0.041626250531632596 68-69 0.0906940654041157 70-71 0.02195003092900179 72-73 0.0448044186355375 74-75 0.08661154052267687 76-77 0.23726446027729128 78-79 0.0798676228387811 80-81 0.01724737568582542 82-83 0.011459492309608353 84-85 0.013823739313732736 86-87 0.25611383939760535 88-89 0.6173785332573329 90-91 0.26484734199207577 92-93 0.3520531741114178 94-95 0.0010335506028959056 96-97 0.003992089203685435 98-99 0.0032169262515135055 100-101 0.004612219565422978 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3870154.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.20087837867025 #Duplication Level Percentage of deduplicated Percentage of total 1 72.09337520126226 36.19150760386408 2 13.329960868517643 13.383514887057757 3 5.5753332703212175 8.39659882271848 4 2.8042231670250284 5.630978646178918 5 1.593359336525375 3.9994019133214533 6 1.0574938097268414 3.1852270876976294 7 0.7080993734714982 2.48830473693587 8 0.48727906069479415 1.9569469489929634 9 0.3709884933833488 1.6761553412601242 >10 1.8490294123352002 16.330409605031182 >50 0.09865638438353623 3.356992658939734 >100 0.03039511223703289 2.511950710640907 >500 0.0011871352381016022 0.4131763282334424 >1k 6.193748781808702E-4 0.4788347091275672 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5838765072397636E-5 2 0.0 0.0 0.0 0.0 2.5838765072397636E-5 3 0.0 0.0 0.0 0.0 2.5838765072397636E-5 4 0.0 0.0 0.0 2.5838765072397636E-5 2.5838765072397636E-5 5 0.0 1.2919382536198817E-4 0.0 2.5838765072397636E-5 2.5838765072397636E-5 6 0.0 1.2919382536198817E-4 0.0 2.5838765072397636E-5 2.5838765072397636E-5 7 0.0 1.8087135550678345E-4 0.0 2.5838765072397636E-5 2.5838765072397636E-5 8 0.0 1.8087135550678345E-4 0.0 5.167753014479527E-5 5.167753014479527E-5 9 0.0 1.8087135550678345E-4 0.0 5.167753014479527E-5 7.75162952171929E-5 10-11 0.0 1.8087135550678345E-4 0.0 5.167753014479527E-5 1.0335506028959054E-4 12-13 0.0 1.8087135550678345E-4 0.0 5.167753014479527E-5 4.2633962369456103E-4 14-15 0.0 1.8087135550678345E-4 0.0 6.459691268099408E-5 6.072109792013445E-4 16-17 0.0 1.8087135550678345E-4 0.0 7.75162952171929E-5 7.10566039490935E-4 18-19 1.2919382536198818E-5 1.8087135550678345E-4 0.0 1.1627444282578936E-4 8.785180124615197E-4 20-21 2.5838765072397636E-5 1.8087135550678345E-4 0.0 1.9379073804298225E-4 0.0010077118378235077 22-23 2.5838765072397636E-5 1.8087135550678345E-4 0.0 3.359039459411693E-4 0.0010981475155768996 24-25 2.5838765072397636E-5 1.8087135550678345E-4 0.0 7.493241870995314E-4 0.0011110668981130984 26-27 2.5838765072397636E-5 1.8087135550678345E-4 0.0 0.001627842199561051 0.0012660994885474843 28-29 2.5838765072397636E-5 2.0671012057918108E-4 0.0 0.00688603089179397 0.0013306964012284783 30-31 2.5838765072397636E-5 2.0671012057918108E-4 0.0 0.02852599663992699 0.001356535166300876 32-33 2.5838765072397636E-5 2.0671012057918108E-4 0.0 0.0777359247203083 0.0014340514615180688 34-35 2.5838765072397636E-5 2.3254888565157872E-4 0.0 0.1445032936673838 0.0014986483741990628 36-37 2.5838765072397636E-5 3.359039459411693E-4 0.0 0.2513207484766756 0.0014986483741990628 38-39 2.5838765072397636E-5 3.617427110135669E-4 0.0 0.42981493759679845 0.0015890840519524546 40-41 2.5838765072397636E-5 3.617427110135669E-4 0.0 0.6377782382819908 0.001627842199561051 42-43 2.5838765072397636E-5 3.617427110135669E-4 0.0 0.8593068906301919 0.001627842199561051 44-45 2.5838765072397636E-5 3.875814760859645E-4 0.0 1.1206659993374941 0.0016795197297058463 46-47 2.5838765072397636E-5 4.2633962369456103E-4 0.0 1.4268812042104786 0.0018733104677488286 48-49 2.5838765072397636E-5 4.3925900623075984E-4 0.0 1.7530568551018901 0.0020283430581832145 50-51 2.5838765072397636E-5 4.3925900623075984E-4 0.0 2.104787044649903 0.0021704562660814016 52-53 2.5838765072397636E-5 4.5217838876695864E-4 0.0 2.4570727676469724 0.0022996500914433896 54-55 2.5838765072397636E-5 6.45969126809941E-4 0.0 2.8518115816579908 0.0023771663866605825 56-57 2.5838765072397636E-5 7.234854220271338E-4 0.0 3.313692426709635 0.002390085769196781 58-59 2.5838765072397636E-5 8.52679247389122E-4 0.0 3.804499769259828 0.00240300515173298 60-61 2.5838765072397636E-5 8.785180124615197E-4 0.0 4.329646830591237 0.00240300515173298 62-63 2.5838765072397636E-5 8.785180124615197E-4 0.0 4.8659303996688505 0.002532198977094968 64-65 2.5838765072397636E-5 9.301955426063149E-4 0.0 5.436217783581739 0.002583876507239764 66-67 2.5838765072397636E-5 9.301955426063149E-4 0.0 6.082794121370881 0.002596795889775963 68-69 2.5838765072397636E-5 9.301955426063149E-4 0.0 6.783929011610391 0.00262263465484836 70-71 2.5838765072397636E-5 9.431149251425137E-4 0.0 7.521599915662271 0.0026872315675293542 72-73 3.875814760859645E-5 9.689536902149113E-4 0.0 8.273792205684838 0.002855183540499939 74-75 5.167753014479527E-5 9.818730727511101E-4 0.0 9.055285655299505 0.0029456192182533304 76-77 5.167753014479527E-5 9.818730727511101E-4 0.0 9.89392153387178 0.002971457983325728 78-79 5.167753014479527E-5 0.0010335506028959053 0.0 10.814014119334786 0.003036054896006722 80-81 6.459691268099408E-5 0.0010593893679683032 1.2919382536198818E-5 11.754571006735134 0.003074813043615319 82-83 7.75162952171929E-5 0.0010593893679683032 2.5838765072397636E-5 12.72526881359243 0.003204006868977307 84-85 7.75162952171929E-5 0.0010593893679683032 2.5838765072397636E-5 13.704209186507825 0.0032427650165859035 86-87 7.75162952171929E-5 0.0010852281330407008 2.5838765072397636E-5 14.710603247312639 0.003333200694339295 88-89 7.75162952171929E-5 0.0010852281330407008 2.5838765072397636E-5 15.778041390600993 0.003410716989556488 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7330 0.0 36.909286 1 GGTATCA 4550 0.0 35.73897 1 TCAACGC 8930 0.0 29.820377 4 TATCAAC 9120 0.0 29.405027 2 ATCAACG 9285 0.0 28.833607 3 CAACGCA 9280 0.0 28.691603 5 AACGCAG 9795 0.0 27.473787 6 GTACATG 13450 0.0 25.488268 1 TACATGG 13780 0.0 24.17998 2 ACATGGG 13960 0.0 23.189997 3 ACGCAGA 11580 0.0 22.501099 7 CGCAGAG 12505 0.0 20.494566 8 CATGGGG 9785 0.0 19.452942 4 GCAGAGT 13360 0.0 18.50778 9 GTACCGT 600 0.0 18.19351 6 GTATAGG 785 0.0 18.171005 1 AGAGTAC 10510 0.0 17.4741 10-11 TAAGGCG 1040 0.0 17.34164 5 GTATTAA 2135 0.0 17.148266 1 TAAGGTG 1725 0.0 17.058565 5 >>END_MODULE