##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920864_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2870852 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.250875349896127 31.0 28.0 31.0 16.0 34.0 2 28.27591774149277 31.0 28.0 33.0 16.0 34.0 3 28.342935476994285 31.0 28.0 34.0 16.0 34.0 4 31.784359834641425 35.0 32.0 37.0 19.0 37.0 5 31.741357269549248 35.0 32.0 37.0 19.0 37.0 6 31.86547234061526 35.0 32.0 37.0 19.0 37.0 7 31.693902367659497 35.0 32.0 37.0 18.0 37.0 8 31.62704416667944 35.0 32.0 37.0 18.0 37.0 9 32.85269564575255 37.0 32.0 39.0 17.0 39.0 10-11 32.64713053825136 37.0 32.0 39.0 17.0 39.0 12-13 32.47702877055313 37.0 32.0 39.0 17.0 39.0 14-15 33.18467409674898 38.0 32.0 40.0 16.5 41.0 16-17 33.07173776286622 38.0 32.0 40.0 16.0 41.0 18-19 32.96270619314406 38.0 32.0 40.0 11.0 41.0 20-21 32.87456754998168 38.0 32.0 40.0 10.5 41.0 22-23 32.64519278597434 38.0 31.0 40.0 10.0 41.0 24-25 32.447178224443476 37.0 31.0 40.0 10.0 41.0 26-27 32.475403294910365 37.5 31.0 40.0 9.5 41.0 28-29 32.3138014429166 37.0 31.0 40.0 8.5 41.0 30-31 32.06624967082942 37.0 30.0 40.0 8.0 41.0 32-33 31.817622434037006 37.0 30.0 40.0 7.0 41.0 34-35 31.491146182387666 37.0 30.0 40.0 2.0 41.0 36-37 31.18414846881692 37.0 30.0 40.0 2.0 41.0 38-39 30.984984074414147 36.0 29.5 40.0 2.0 41.0 40-41 30.794936137425406 36.0 29.0 39.5 2.0 41.0 42-43 30.560727616749315 36.0 28.5 39.0 2.0 40.5 44-45 30.28453277981589 36.0 28.0 39.0 2.0 40.0 46-47 30.036650443840365 35.0 27.0 39.0 2.0 40.0 48-49 29.73931519284171 35.0 27.0 39.0 2.0 40.0 50-51 28.644657230675772 34.0 25.0 38.0 2.0 39.5 52-53 29.11522415645251 34.5 26.5 38.5 2.0 39.5 54-55 29.763258607549254 35.0 28.0 39.0 2.0 40.0 56-57 29.724122838794894 35.0 27.5 39.0 2.0 40.0 58-59 29.48826080201975 35.0 27.0 39.0 2.0 40.0 60-61 29.173175942194163 35.0 26.0 39.0 2.0 40.0 62-63 28.78440372405126 34.5 26.0 38.5 2.0 40.0 64-65 28.370643627745352 34.0 25.5 38.0 2.0 40.0 66-67 27.9815873475888 34.0 25.0 38.0 2.0 40.0 68-69 27.53017902002611 34.0 23.0 37.0 2.0 39.5 70-71 27.20171311513098 33.0 23.0 36.5 2.0 39.0 72-73 26.733561500209696 33.0 22.0 36.0 2.0 39.0 74-75 26.288165150972603 33.0 20.5 35.5 2.0 38.5 76-77 25.8590050967448 32.0 19.5 35.0 2.0 37.5 78-79 25.39291175581326 32.0 18.0 35.0 2.0 37.0 80-81 24.938127426979865 32.0 14.5 35.0 2.0 36.5 82-83 24.455062295095672 31.0 7.5 35.0 2.0 36.0 84-85 24.048366303801103 31.0 4.5 34.0 2.0 35.5 86-87 23.596773362054194 31.0 2.0 34.0 2.0 35.0 88-89 23.070026772539997 30.5 2.0 34.0 2.0 35.0 90-91 22.571123659457193 30.0 2.0 34.0 2.0 35.0 92-93 22.03262167468055 30.0 2.0 34.0 2.0 35.0 94-95 21.40095919260206 29.5 2.0 34.0 2.0 35.0 96-97 20.759852127521725 29.0 2.0 34.0 2.0 35.0 98 20.36593666270501 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 163543.0 3 27373.0 4 20016.0 5 16042.0 6 14913.0 7 15026.0 8 17196.0 9 19633.0 10 21534.0 11 23513.0 12 23981.0 13 23805.0 14 22371.0 15 23559.0 16 25737.0 17 27418.0 18 28159.0 19 28045.0 20 29017.0 21 30742.0 22 33059.0 23 37162.0 24 42224.0 25 47647.0 26 55248.0 27 63636.0 28 73301.0 29 84366.0 30 97501.0 31 114198.0 32 135249.0 33 162230.0 34 199397.0 35 248761.0 36 311433.0 37 341127.0 38 203113.0 39 19576.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.84276303668622 18.227465847121096 12.99115138298315 24.93861973320953 2 15.784762800012404 19.812847518250642 39.4923232850424 24.910066396694557 3 19.28805299467726 23.84279695059028 28.888495592486706 27.980654462245752 4 13.077995564372 15.89217368765403 37.05919814492366 33.97063260305031 5 14.29952603068467 36.81324271103202 34.49962860093345 14.387602657349868 6 33.23768368512684 35.24029883663038 17.54186210911655 13.980155369126232 7 29.0472799583617 31.428034924335485 21.203065459787616 18.321619657515207 8 26.443162175512768 34.44986877335308 20.29250966520658 18.81445938592757 9 26.79779382566569 15.769917780505576 19.61933251870873 37.81295587512 10-11 25.28747563441097 25.49474859728053 27.94111295183451 21.276662816473994 12-13 26.048755865707136 22.793116409140453 27.768939471789395 23.389188253363017 14-15 23.214623168537805 24.422038836760795 25.240341449710435 27.12299654499097 16-17 23.222322294932177 27.42329763518568 25.972340104236245 23.382039965645895 18-19 23.27186431062999 26.693159622059852 27.386443642187253 22.648532425122905 20-21 23.99018089936032 26.056016072816394 27.022535860824497 22.931267166998786 22-23 23.724263302926463 25.884466206777766 26.831468227065013 23.559802263230758 24-25 23.445537749221963 26.055591358760076 26.927892191187485 23.570978700830477 26-27 23.31290952552337 26.263715483082166 26.896908716820754 23.52646627457371 28-29 23.385524217790206 26.31610772756184 26.845823422293087 23.45254463235486 30-31 23.630501239961472 26.0799478923443 26.79878053030483 23.490770337389407 32-33 23.37859836063432 26.196405101526228 26.644508839178943 23.78048769866051 34-35 23.7110874885906 26.25071811064565 26.546384007134282 23.491810393629468 36-37 23.7681796598535 25.933435627328983 26.60726684083599 23.691117871981522 38-39 23.54089312980304 26.22492900838464 26.5879869171095 23.646190944702816 40-41 23.691221810911127 26.001723704151342 26.688930887021794 23.618123597915737 42-43 23.621500315909547 25.878299366134883 26.62280714793223 23.87739317002334 44-45 23.54912341616464 26.00004056073113 26.657474066482536 23.7933619566217 46-47 23.620428650824913 25.952932780670867 26.55021104216525 23.87642752633897 48-49 23.5173373335191 25.99817740050042 26.54333149022245 23.94115377575803 50-51 23.35516028642435 26.151089316982844 26.67830646524501 23.815443931347797 52-53 23.451645210592062 25.971085460138088 26.71493802452992 23.862331304739925 54-55 23.261020596781222 25.86035061893891 26.904007623306775 23.974621160973093 56-57 23.311255637890824 25.975249759831183 26.714081429031555 23.999413173246438 58-59 23.12005177864977 25.778585430226453 26.88092728820162 24.220435502922165 60-61 23.168084530468278 25.742376373770487 26.99650913841955 24.093029957341685 62-63 23.011457555540833 25.770784902956844 27.128062138667943 24.08969540283438 64-65 23.0082816415799 25.58140104358339 26.95783827955665 24.45247903528006 66-67 23.01451593772076 25.631894825493497 26.890523580744922 24.46306565604082 68-69 23.127647279438186 25.485849266913956 26.91729691405352 24.46920653959434 70-71 22.916235914513837 25.298986416516694 27.05942640679211 24.72535126217736 72-73 22.85336717500237 25.267294778668987 27.0704576139736 24.80888043235505 74-75 22.826025423112835 25.400258871810927 27.050059965446483 24.723655739629752 76-77 22.715966681378184 25.22573097208201 27.208221817568067 24.850080528971734 78-79 22.704115863673024 25.133958461170742 27.215058279880406 24.94686739527583 80-81 22.66910123374465 25.13714972517631 27.261367167035555 24.932381874043482 82-83 22.654579722822508 25.03870947562181 27.325578449136163 24.981132352419525 84-85 22.619212582134455 25.008994752725993 27.287904254941786 25.08388841019777 86-87 22.565985294436246 24.89889138695089 27.42880814487797 25.106315173734895 88-89 22.612654971046435 24.701786154375895 27.39652137739612 25.28903749718155 90-91 22.557952466473818 24.64430941371846 27.514247283312937 25.28349083649479 92-93 22.634151353434973 24.464400198291667 27.56018251639951 25.341265931873846 94-95 22.49548277513132 24.298196255508916 27.62248931418566 25.583831655174098 96-97 22.623715471104894 24.12768417303827 27.614151512810952 25.634448843045888 98 22.632742156669504 23.992245786346043 27.729072220288447 25.64593983669601 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 68.0 1 53.0 2 72.0 3 116.5 4 117.0 5 145.5 6 240.5 7 390.0 8 588.0 9 734.5 10 760.0 11 827.0 12 977.5 13 1095.5 14 1224.0 15 1326.5 16 1435.0 17 1488.5 18 1446.5 19 1458.0 20 1519.5 21 1597.5 22 1777.0 23 2134.0 24 2566.5 25 3198.5 26 4209.5 27 5643.0 28 7654.0 29 10682.5 30 15157.0 31 21334.0 32 28534.0 33 36247.5 34 44723.5 35 53532.5 36 62547.0 37 70926.5 38 78192.0 39 84901.0 40 91071.0 41 96721.0 42 103856.0 43 112084.5 44 118375.0 45 122473.0 46 127118.5 47 131401.0 48 132277.5 49 131135.0 50 130348.0 51 128271.5 52 124453.5 53 121535.5 54 115718.5 55 106686.5 56 96563.5 57 85393.0 58 75747.5 59 65729.5 60 54452.0 61 44193.5 62 35190.0 63 26837.5 64 19770.5 65 14493.5 66 10409.5 67 7470.5 68 5384.5 69 3859.0 70 2741.0 71 2086.5 72 1664.5 73 1230.0 74 940.5 75 678.0 76 444.0 77 307.0 78 191.0 79 106.5 80 57.0 81 38.5 82 22.0 83 12.0 84 7.5 85 8.5 86 9.5 87 5.5 88 3.5 89 2.5 90 3.5 91 4.0 92 2.0 93 2.0 94 2.5 95 2.0 96 1.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3624359597777942 2 0.023651515299290944 3 0.018322086962337312 4 0.01595345214591348 5 0.021735707727183428 6 0.02281552654055312 7 0.014560137548017105 8 0.008568884777062698 9 0.0 10-11 0.0 12-13 0.004911433957584717 14-15 0.003222040007635364 16-17 0.005625507689006609 18-19 0.035964933058200144 20-21 0.07515190612403565 22-23 0.09389198746574187 24-25 0.06175866955175676 26-27 0.07173828535918954 28-29 0.05493142802206453 30-31 0.049044673845952354 32-33 0.018618166314390294 34-35 0.3196263687574281 36-37 0.4895236675384172 38-39 0.44474601964852245 40-41 0.4546733861585341 42-43 0.4057157944749503 44-45 0.38117604111950043 46-47 0.37892932133039253 48-49 0.3710222609873306 50-51 0.3675041416276423 52-53 0.42569244252228955 54-55 0.42670259560576446 56-57 0.39726882472520353 58-59 0.382673854312239 60-61 0.39660700029120277 62-63 0.3783371626262866 64-65 0.4263542669562903 66-67 0.4465921614907352 68-69 0.38993650665377383 70-71 0.3504708706683591 72-73 0.33735629701565945 74-75 0.3206016889759556 76-77 0.31868588140384807 78-79 0.31851171707911097 80-81 0.33310668749207556 82-83 0.329954313214335 84-85 0.32957115169991347 86-87 0.316212747992582 88-89 0.35658403846662945 90-91 0.33761754350276507 92-93 0.32779467558759556 94-95 0.3337685119260763 96-97 0.33401234198070817 98 0.32882224510354413 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2870852.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.214434313143656 #Duplication Level Percentage of deduplicated Percentage of total 1 73.47888834893946 38.366585890985164 2 11.504521998061247 12.014042163437702 3 5.3262349813204 8.343190397055658 4 2.9459305246582734 6.152803834834169 5 1.8195677835301935 4.7503851255724845 6 1.1845439525416783 3.71101754406114 7 0.8304571709989378 3.03532959835022 8 0.58331724565693 2.436606400566212 9 0.42923035461146325 2.0170818140460844 >10 1.8243883082941421 15.447999481678137 >50 0.05453859346225613 1.9148565643565947 >100 0.01777830655219335 1.5443711536664444 >500 4.685577344231137E-4 0.16688950413235648 >1k 1.3387363839578622E-4 0.09884052725765552 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.483286494740934E-5 0.0 3 0.0 0.0 0.0 3.483286494740934E-5 0.0 4 0.0 0.0 0.0 2.4383005463186539E-4 0.0 5 0.0 0.0 0.0 2.4383005463186539E-4 0.0 6 0.0 0.0 0.0 2.4383005463186539E-4 0.0 7 0.0 0.0 0.0 2.786629195792747E-4 0.0 8 0.0 0.0 0.0 2.786629195792747E-4 0.0 9 0.0 0.0 0.0 5.224929742111401E-4 0.0 10-11 0.0 0.0 0.0 6.095751365796634E-4 0.0 12-13 0.0 0.0 0.0 6.966572989481868E-4 0.0 14-15 0.0 3.483286494740934E-5 0.0 7.314901638955961E-4 0.0 16-17 0.0 1.0449859484222802E-4 0.0 8.011558937904148E-4 0.0 18-19 0.0 1.0449859484222802E-4 0.0 8.185723262641195E-4 0.0 20-21 0.0 1.2191502731593269E-4 0.0 8.359887587378242E-4 0.0 22-23 3.483286494740934E-5 1.3933145978963735E-4 0.0 9.753202185274615E-4 0.0 24-25 3.483286494740934E-5 1.3933145978963735E-4 0.0 0.0014629803277911922 1.741643247370467E-5 26-27 3.483286494740934E-5 1.741643247370467E-4 0.0 0.0026298813035294053 3.483286494740934E-5 28-29 3.483286494740934E-5 1.741643247370467E-4 0.0 0.007401983801324485 3.483286494740934E-5 30-31 3.483286494740934E-5 1.9158075721075135E-4 0.0 0.02865003141924418 3.483286494740934E-5 32-33 3.483286494740934E-5 2.0899718968445604E-4 0.0 0.07520415542145677 3.483286494740934E-5 34-35 3.483286494740934E-5 2.0899718968445604E-4 0.0 0.14081185654990225 3.483286494740934E-5 36-37 3.483286494740934E-5 2.4383005463186539E-4 0.0 0.24736559042402745 3.483286494740934E-5 38-39 3.483286494740934E-5 2.4383005463186539E-4 0.0 0.417646050719438 5.2249297421114E-5 40-41 3.483286494740934E-5 2.4383005463186539E-4 0.0 0.6139640775630371 6.966572989481868E-5 42-43 3.483286494740934E-5 2.4383005463186539E-4 0.0 0.8228916015175982 6.966572989481868E-5 44-45 3.483286494740934E-5 2.4383005463186539E-4 0.0 1.0730786540023658 6.966572989481868E-5 46-47 3.483286494740934E-5 2.4383005463186539E-4 0.0 1.3740346071479825 6.966572989481868E-5 48-49 3.483286494740934E-5 2.4383005463186539E-4 0.0 1.7021601949525786 6.966572989481868E-5 50-51 3.483286494740934E-5 2.4383005463186539E-4 0.0 2.0528923121080433 6.966572989481868E-5 52-53 3.483286494740934E-5 2.4383005463186539E-4 0.0 2.403363182776402 6.966572989481868E-5 54-55 3.483286494740934E-5 2.4383005463186539E-4 0.0 2.8032270559401877 6.966572989481868E-5 56-57 3.483286494740934E-5 2.4383005463186539E-4 0.0 3.26000783042804 6.966572989481868E-5 58-59 3.483286494740934E-5 2.4383005463186539E-4 0.0 3.7496011636963518 6.966572989481868E-5 60-61 3.483286494740934E-5 2.4383005463186539E-4 0.0 4.264343825456693 6.966572989481868E-5 62-63 3.483286494740934E-5 2.4383005463186539E-4 0.0 4.796102341743845 6.966572989481868E-5 64-65 3.483286494740934E-5 2.4383005463186539E-4 0.0 5.3663337573654095 6.966572989481868E-5 66-67 3.483286494740934E-5 2.4383005463186539E-4 0.0 6.009801271538902 6.966572989481868E-5 68-69 3.483286494740934E-5 2.4383005463186539E-4 0.0 6.715567364670836 6.966572989481868E-5 70-71 3.483286494740934E-5 2.4383005463186539E-4 0.0 7.470325882351302 6.966572989481868E-5 72-73 3.483286494740934E-5 2.4383005463186539E-4 0.0 8.227923278524981 6.966572989481868E-5 74-75 3.483286494740934E-5 2.786629195792747E-4 1.741643247370467E-5 8.99999373008431 6.966572989481868E-5 76-77 3.483286494740934E-5 2.786629195792747E-4 3.483286494740934E-5 9.840179849048297 6.966572989481868E-5 78-79 3.483286494740934E-5 2.786629195792747E-4 3.483286494740934E-5 10.75335823650958 6.966572989481868E-5 80-81 3.483286494740934E-5 2.960793520529794E-4 3.483286494740934E-5 11.705183687630013 6.966572989481868E-5 82-83 3.483286494740934E-5 3.134957845266841E-4 3.483286494740934E-5 12.66994954807841 6.966572989481868E-5 84-85 3.483286494740934E-5 3.134957845266841E-4 3.483286494740934E-5 13.625171203531217 6.966572989481868E-5 86 3.483286494740934E-5 3.134957845266841E-4 3.483286494740934E-5 14.367825300642457 6.966572989481868E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5080 0.0 37.14939 1 GGTATCA 3080 0.0 34.222862 1 TCAACGC 5870 0.0 31.80659 4 ATCAACG 5885 0.0 31.569618 3 CAACGCA 6115 0.0 30.68228 5 TATCAAC 6270 0.0 29.485836 2 AACGCAG 6495 0.0 29.235725 6 GTACATG 8690 0.0 25.26563 1 ACGCAGA 7660 0.0 24.365488 7 TACATGG 8825 0.0 23.652256 2 CGCAGAG 7900 0.0 23.333813 8 ACATGGG 9450 0.0 21.553207 3 GTATAAT 1130 0.0 19.552143 1 GCAGAGT 9195 0.0 18.799818 9 GAGTACA 6670 0.0 18.287384 1 CATGGGG 5795 0.0 17.890224 4 AGTACAT 6305 0.0 17.826122 2 AGAGTAC 7395 0.0 17.11424 10-11 GTATAGG 735 0.0 16.908611 1 TAAGGCG 560 0.0 16.383352 5 >>END_MODULE