##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920864_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2870852 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.32636652812475 31.0 30.0 34.0 27.0 34.0 2 30.336297029592608 31.0 30.0 34.0 26.0 34.0 3 30.47346084019657 31.0 30.0 34.0 27.0 34.0 4 34.125552275073744 35.0 35.0 37.0 30.0 37.0 5 33.6826402057647 35.0 35.0 37.0 28.0 37.0 6 33.633214112047575 35.0 35.0 37.0 28.0 37.0 7 33.4519456245045 35.0 35.0 37.0 28.0 37.0 8 33.38162538507732 35.0 33.0 37.0 27.0 37.0 9 34.71807672426165 38.0 35.0 39.0 27.0 39.0 10-11 34.53152635524228 37.5 34.0 39.0 27.0 39.0 12-13 34.36688550994617 37.0 34.0 39.0 27.0 39.0 14-15 35.27149100685092 38.0 34.0 40.0 27.0 41.0 16-17 35.149970635894846 38.0 34.0 40.0 26.5 41.0 18-19 35.068015174589284 38.5 34.0 40.0 26.0 41.0 20-21 34.9561523896042 38.0 34.0 40.0 25.0 41.0 22-23 34.81424939355982 38.0 34.0 40.0 25.0 41.0 24-25 34.65115930741118 38.0 33.5 40.0 24.5 41.0 26-27 34.47780676259173 38.0 33.0 40.0 24.0 41.0 28-29 34.424589808182375 38.0 33.0 40.0 24.0 41.0 30-31 34.412887881367624 38.0 33.0 40.0 24.0 41.0 32-33 34.272017679768936 38.0 33.0 40.0 24.0 41.0 34-35 34.109691826677235 38.0 33.0 40.0 23.0 41.0 36-37 33.92264752763291 38.0 33.0 40.0 22.0 41.0 38-39 33.748333944069564 38.0 33.0 40.0 20.5 41.0 40-41 33.52553910825079 38.0 32.0 40.0 19.0 41.0 42-43 33.558317008330626 38.0 32.5 40.0 19.0 41.0 44-45 33.42282848436631 38.0 32.0 40.0 18.0 41.0 46-47 33.188724636449386 38.0 32.0 40.0 15.5 41.0 48-49 32.93540698022747 37.5 31.5 40.0 15.0 41.0 50-51 32.68898745041542 37.0 31.0 40.0 13.0 41.0 52-53 32.4382853940224 37.0 31.0 40.0 9.5 41.0 54-55 32.1685652900254 37.0 31.0 40.0 8.5 41.0 56-57 31.853385510642834 36.0 30.0 39.5 8.0 41.0 58-59 31.528434241820896 36.0 30.0 39.0 7.0 41.0 60-61 31.21116466470581 35.5 29.5 39.0 2.0 40.0 62-63 30.894142923424823 35.0 29.0 39.0 2.0 40.0 64-65 30.488504283745733 35.0 29.0 38.5 2.0 40.0 66-67 30.05136715511632 34.5 28.0 38.0 2.0 40.0 68-69 29.602881479087046 34.0 28.0 37.5 2.0 40.0 70-71 29.171767649464343 34.0 27.5 37.0 2.0 39.0 72-73 28.729927039081083 34.0 26.5 36.0 2.0 39.0 74-75 28.275446278665704 33.5 26.0 36.0 2.0 39.0 76-77 26.81657692559561 31.5 25.0 34.5 2.0 36.5 78-79 27.65716727995731 33.0 26.0 35.0 2.0 37.0 80-81 27.676228346149507 33.0 26.0 35.0 2.0 37.0 82-83 27.329611557823252 33.0 26.0 35.0 2.0 36.0 84-85 27.001491543277048 33.0 25.5 35.0 2.0 36.0 86-87 26.454185203556296 33.0 25.0 35.0 2.0 35.5 88-89 26.0902763360842 32.0 24.0 35.0 2.0 35.0 90-91 25.723826933607164 32.0 22.5 35.0 2.0 35.0 92-93 25.417093775645696 32.0 20.0 34.0 2.0 35.0 94-95 25.02993153252066 32.0 19.0 34.0 2.0 35.0 96-97 24.498423987025454 32.0 12.0 34.0 2.0 35.0 98-99 23.898715781935117 32.0 2.0 34.0 2.0 35.0 100-101 21.70171799173207 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 59196.0 3 27625.0 4 14922.0 5 10554.0 6 8848.0 7 9165.0 8 10046.0 9 12189.0 10 13961.0 11 15811.0 12 17745.0 13 19481.0 14 20954.0 15 22832.0 16 24016.0 17 25056.0 18 24323.0 19 23378.0 20 23810.0 21 24840.0 22 26872.0 23 30435.0 24 35415.0 25 42251.0 26 49422.0 27 59031.0 28 70123.0 29 82321.0 30 96908.0 31 115328.0 32 137657.0 33 167801.0 34 209172.0 35 270016.0 36 359539.0 37 431907.0 38 259280.0 39 18620.0 40 2.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.96113370157416 19.588897776177134 13.706676214685242 24.743292307563454 2 15.882985260124869 20.949878293969874 38.41218565081028 24.754950795094977 3 19.070578251436327 24.772236071842137 29.311245782988145 26.84593989373339 4 13.560674205058278 16.97883476597147 36.543420536485065 32.91707049248519 5 14.218383088831846 37.13424492043846 34.55366358596997 14.093708404759722 6 33.05618126407845 35.89847482094663 17.299345156318648 13.745998758656281 7 28.933913298265683 31.567998214061475 21.27795761186533 18.22013087580751 8 26.26376197901173 34.997006009951136 20.1593004979056 18.57993151313153 9 26.544016441418027 15.818900236003552 19.638348798321257 37.99873452425716 10-11 25.31103540143949 25.70788930424594 27.971618172180996 21.009457122133572 12-13 26.061975864256233 22.93533800816474 27.76492774515578 23.237758382423248 14-15 23.15778883748049 24.611304376936243 25.228582946142996 27.00232383944027 16-17 23.288432317090066 27.624050000444406 25.889377693978194 23.198139988487334 18-19 23.26634066216005 26.826995208932914 27.346399309506282 22.560264819400754 20-21 24.06551052344931 26.10371558723534 26.99080676932319 22.839967119992167 22-23 23.736336178466697 26.007103304696074 26.812500087152834 23.444060429684395 24-25 23.471592492277257 26.215899393768936 26.943589266387054 23.368918847566754 26-27 23.355639339108333 26.411616736370757 26.89627480757454 23.336469116946372 28-29 23.444377772016537 26.361406839336638 26.912917910676605 23.281297477970224 30-31 23.634140138040603 26.218168261810277 26.791862502917947 23.355829097231172 32-33 23.436469390023497 26.26629681288574 26.621040062188957 23.67619373490181 34-35 23.71365327434741 26.344346101673715 26.62351654772106 23.318484076257814 36-37 23.83763640934152 26.076610994693528 26.585325531487534 23.500427064477417 38-39 23.5438975371051 26.26111689517191 26.647133266154604 23.547852301568387 40-41 23.686750744954303 26.064315621959537 26.743950866551053 23.50498276653511 42-43 23.648167163534353 25.965530185256313 26.629303610107357 23.756999041101974 44-45 23.48570673000455 26.123079973081165 26.700061443648753 23.69115185326553 46-47 23.628321636776885 25.9891955665864 26.617572605353505 23.76491019128321 48-49 23.45892328725177 26.040336187732276 26.64101231851128 23.85972820650467 50-51 23.351063570355063 26.182333214651766 26.643379763143173 23.823223451850005 52-53 23.49076237873298 26.019327479783094 26.707718503580775 23.782191637903153 54-55 23.3393253103548 25.950294460382406 26.72289370685646 23.987486522406336 56-57 23.338305949112115 26.080333435224055 26.489951571424964 24.091409044238862 58-59 23.105538027182863 25.94064079240824 26.70218593273343 24.25163524767547 60-61 23.179486071731436 26.01189601025153 26.721374702721683 24.08724321529535 62-63 22.97928093337609 26.057730376404535 26.784607299912892 24.178381390306487 64-65 22.869245170986925 25.86843333210829 26.62807137145382 24.634250125450965 66-67 22.928524149846005 25.92936794877759 26.550430445478096 24.59167745589831 68-69 23.108725069940046 25.80077846162052 26.517200919901846 24.573295548537583 70-71 22.872804003412245 25.63561067732218 26.584255769921207 24.90732954934437 72-73 22.85426394246233 25.60843146144472 26.573067008917167 24.96423758717578 74-75 22.809224844873803 25.714291690590564 26.452106366074467 25.024377098461166 76-77 22.72711402469298 25.57411769142086 26.694788023186067 25.003980260700093 78-79 22.719683467908858 25.558972839420097 26.60994304688283 25.111400645788212 80-81 22.65291284036905 25.596602815588337 26.595931475203432 25.15455286883918 82-83 22.60159344506725 25.50630375786881 26.61929413240156 25.272808664662378 84-85 22.531870557469773 25.474899045577242 26.54975468375743 25.44347571319555 86-87 22.4527147505673 25.46599044971012 26.619861585750414 25.461433213972168 88-89 22.481410727509317 25.32136302289941 26.551477486627324 25.645748762963954 90-91 22.339178120942837 25.270192281667363 26.638227058779364 25.752402538610436 92-93 22.376327984693003 25.165279347788854 26.596098309840844 25.8622943576773 94-95 22.143611406274193 25.06369688000673 26.69883745900784 26.093854254711236 96-97 22.239709008725626 24.937185163820185 26.688511216101496 26.134594611352686 98-99 22.14773937754419 24.860872981978975 26.722820244687988 26.26856739578885 100-101 22.191730383404686 24.720596464955488 26.769320588766522 26.318352562873304 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 73.0 1 51.5 2 50.0 3 74.5 4 65.0 5 72.0 6 132.0 7 260.5 8 391.5 9 421.5 10 352.0 11 322.5 12 338.5 13 353.5 14 399.5 15 459.0 16 502.0 17 558.0 18 659.0 19 724.5 20 807.5 21 948.5 22 1191.5 23 1520.5 24 1903.0 25 2386.0 26 3224.0 27 4454.0 28 5989.0 29 8370.0 30 11763.5 31 16486.5 32 23032.0 33 30322.0 34 37607.0 35 45578.5 36 55351.0 37 64046.0 38 71058.5 39 78553.5 40 85358.5 41 91188.5 42 96436.5 43 103566.5 44 111569.5 45 118164.5 46 123003.0 47 126671.5 48 130150.5 49 132079.5 50 131032.0 51 127240.5 52 123699.0 53 121521.0 54 116722.0 55 107572.5 56 96328.5 57 85310.5 58 75711.5 59 65929.5 60 54955.0 61 44487.0 62 35465.5 63 26464.0 64 19078.0 65 14132.0 66 10203.0 67 7237.0 68 5113.5 69 3709.0 70 2696.5 71 1974.5 72 1514.0 73 1208.0 74 872.5 75 612.5 76 443.5 77 287.0 78 168.0 79 72.5 80 34.5 81 25.0 82 13.0 83 7.0 84 2.5 85 2.0 86 1.5 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 1.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18586816735937625 2 0.0 3 0.01170384262232954 4 0.013584817329489643 5 0.0063047485554810915 6 0.10421993192264874 7 0.13974945416900628 8 0.11985988828403554 9 0.13745048508247726 10-11 0.11048984761318242 12-13 0.10989768890907647 14-15 0.11090784199255133 16-17 0.06400538934086467 18-19 0.07593564558535236 20-21 0.03563402084119975 22-23 0.08109090959756896 24-25 0.05456568294011674 26-27 0.0633609813393376 28-29 0.038316151442150274 30-31 0.023756013894133173 32-33 0.0309664169382469 34-35 0.019593486532917755 36-37 0.023564433136922417 38-39 0.03121024699287877 40-41 0.024713917680186926 42-43 0.012870743598067752 44-45 0.025863402223451435 46-47 0.032011402886669184 48-49 0.008830131264168269 50-51 0.014838800467596381 52-53 0.006008669203428111 54-55 0.012087004136751041 56-57 0.00451085601068951 58-59 0.0038141987117413225 60-61 0.022502030756026435 62-63 0.009875117212590549 64-65 0.007262652341534848 66-67 0.03805490495504471 68-69 0.08716924453089188 70-71 0.02091713540091931 72-73 0.04246126237089198 74-75 0.08293705143978164 76-77 0.23400718671669593 78-79 0.07887902267340846 80-81 0.016545610850019436 82-83 0.011912839812013994 84-85 0.01301007505785739 86-87 0.2533742596274556 88-89 0.6081469891168196 90-91 0.26035824904941113 92-93 0.34616901184735405 94-95 9.927366510011663E-4 96-97 0.003936113739057255 98-99 0.003274289305056478 100-101 0.004824351795216194 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2870852.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.28246328225954 #Duplication Level Percentage of deduplicated Percentage of total 1 68.89543059604571 32.57545667472993 2 13.187108113021582 12.470379103062596 3 6.232400024727116 8.840496759885399 4 3.4759738306215064 6.574104200658256 5 2.1455115991114804 5.072253670332526 6 1.403493202432215 3.981636948654124 7 0.9872792198280491 3.26766954226003 8 0.7429527319840936 2.8102908216393856 9 0.5342794505163234 2.2735843651353482 >10 2.300801830058624 17.687005938115387 >50 0.07089878166188864 2.2413383787504633 >100 0.02298290849877196 1.815048212262801 >500 5.918076617720819E-4 0.20287039927011535 >1k 2.9590383086121514E-4 0.18786498524367842 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.3933145978963735E-4 0.0 5 0.0 0.0 0.0 1.741643247370467E-4 0.0 6 0.0 0.0 0.0 1.741643247370467E-4 0.0 7 0.0 0.0 0.0 1.741643247370467E-4 0.0 8 0.0 0.0 0.0 1.741643247370467E-4 0.0 9 0.0 0.0 0.0 2.786629195792747E-4 0.0 10-11 0.0 0.0 0.0 3.3091221700038873E-4 0.0 12-13 0.0 0.0 0.0 3.8316151442150276E-4 0.0 14-15 0.0 0.0 0.0 4.8766010926373077E-4 0.0 16-17 0.0 0.0 0.0 6.269915690533681E-4 0.0 18-19 0.0 0.0 0.0 6.269915690533681E-4 0.0 20-21 0.0 0.0 0.0 6.269915690533681E-4 0.0 22-23 0.0 0.0 0.0 7.837394613167102E-4 0.0 24-25 0.0 0.0 0.0 0.0012888160030541456 0.0 26-27 0.0 0.0 0.0 0.00264729773600311 0.0 28-29 0.0 0.0 0.0 0.007837394613167101 0.0 30-31 0.0 0.0 0.0 0.028719697149139002 0.0 32-33 0.0 0.0 0.0 0.07590081272040496 0.0 34-35 0.0 0.0 0.0 0.14185684249832453 0.0 36-37 0.0 0.0 0.0 0.24954264448324054 0.0 38-39 0.0 0.0 0.0 0.4226968161368123 0.0 40-41 3.483286494740934E-5 0.0 0.0 0.6224458801777313 0.0 42-43 5.2249297421114E-5 0.0 0.0 0.834874107059507 0.0 44-45 6.966572989481868E-5 0.0 0.0 1.0899900099343331 0.0 46-47 6.966572989481868E-5 0.0 0.0 1.3957354820102186 0.0 48-49 6.966572989481868E-5 0.0 0.0 1.725184718682816 0.0 50-51 6.966572989481868E-5 0.0 0.0 2.074941515619753 0.0 52-53 6.966572989481868E-5 0.0 0.0 2.425203389098428 0.0 54-55 6.966572989481868E-5 0.0 0.0 2.822907624635474 0.0 56-57 6.966572989481868E-5 0.0 0.0 3.279131073284168 0.0 58-59 6.966572989481868E-5 0.0 0.0 3.7687418229849534 0.0 60-61 6.966572989481868E-5 0.0 0.0 4.283519317610242 0.0 62-63 6.966572989481868E-5 0.0 0.0 4.8150514202752355 0.0 64-65 6.966572989481868E-5 0.0 0.0 5.383941770596325 0.0 66-67 6.966572989481868E-5 0.0 0.0 6.024883902061131 0.0 68-69 6.966572989481868E-5 0.0 0.0 6.729570176379696 0.0 70-71 6.966572989481868E-5 0.0 0.0 7.482621883677737 0.0 72-73 6.966572989481868E-5 0.0 0.0 8.24131651509726 0.0 74-75 6.966572989481868E-5 0.0 0.0 9.016225845149801 0.0 76-77 6.966572989481868E-5 0.0 0.0 9.861671726720846 0.0 78-79 6.966572989481868E-5 0.0 0.0 10.777096833971239 0.0 80-81 6.966572989481868E-5 0.0 0.0 11.730333016122042 0.0 82-83 6.966572989481868E-5 0.0 0.0 12.698024837226022 0.0 84-85 6.966572989481868E-5 0.0 0.0 13.65941190977452 0.0 86-87 6.966572989481868E-5 0.0 0.0 14.67205554309313 0.0 88-89 1.0449859484222802E-4 0.0 0.0 15.746057268016603 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5180 0.0 38.27816 1 GGTATCA 3095 0.0 33.79923 1 TCAACGC 6175 0.0 30.901215 4 ATCAACG 6185 0.0 30.77451 3 CAACGCA 6320 0.0 30.115042 5 TATCAAC 6580 0.0 29.357878 2 AACGCAG 6655 0.0 28.670927 6 GTACATG 8980 0.0 24.304188 1 ACGCAGA 7910 0.0 24.061995 7 TAAGGCG 635 0.0 23.918417 5 TACATGG 9050 0.0 22.866203 2 CGCAGAG 8295 0.0 22.828363 8 ACATGGG 9740 0.0 20.9554 3 CATGGGG 5905 0.0 18.729342 4 GCAGAGT 9870 0.0 18.12769 9 GACGGTA 245 3.7968148E-6 17.433907 8 AGAGTAC 7960 0.0 17.408052 10-11 TATTAAG 1655 0.0 16.060024 2 GTATTAA 1955 0.0 15.566034 1 GTATAAT 1200 0.0 15.453545 1 >>END_MODULE