##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920862_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3416320 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.123251627482205 31.0 28.0 31.0 16.0 34.0 2 28.157543204383664 31.0 28.0 33.0 16.0 34.0 3 28.222547653615585 31.0 28.0 33.0 16.0 34.0 4 31.657843234825776 35.0 32.0 37.0 19.0 37.0 5 31.609603023136007 35.0 32.0 37.0 19.0 37.0 6 31.725582498126638 35.0 32.0 37.0 19.0 37.0 7 31.54710595026227 35.0 32.0 37.0 18.0 37.0 8 31.48102490399026 35.0 32.0 37.0 17.0 37.0 9 32.69549925065568 37.0 32.0 39.0 17.0 39.0 10-11 32.48406765174222 37.0 32.0 39.0 17.0 39.0 12-13 32.30549524049269 37.0 32.0 39.0 16.0 39.0 14-15 33.0077052208224 38.0 32.0 40.0 14.5 41.0 16-17 32.8860316071094 38.0 32.0 40.0 11.0 41.0 18-19 32.767380104908206 38.0 31.5 40.0 10.0 41.0 20-21 32.677766427032594 38.0 31.0 40.0 10.0 41.0 22-23 32.449062587813785 37.0 31.0 40.0 10.0 41.0 24-25 32.254093147011986 37.0 31.0 40.0 10.0 41.0 26-27 32.280513974100785 37.0 31.0 40.0 9.0 41.0 28-29 32.11130763511615 37.0 30.5 40.0 8.0 41.0 30-31 31.858981886942672 37.0 30.0 40.0 7.5 41.0 32-33 31.608515010303485 37.0 30.0 40.0 2.0 41.0 34-35 31.272191422349195 37.0 30.0 40.0 2.0 41.0 36-37 30.967451673145373 36.0 29.5 40.0 2.0 41.0 38-39 30.766685205133008 36.0 29.0 39.5 2.0 41.0 40-41 30.5664770864556 36.0 28.5 39.0 2.0 40.5 42-43 30.32968852449419 36.0 28.0 39.0 2.0 40.0 44-45 30.056246487448483 35.0 27.0 39.0 2.0 40.0 46-47 29.808239714078304 35.0 27.0 39.0 2.0 40.0 48-49 29.51070332989884 35.0 26.0 39.0 2.0 40.0 50-51 28.41921760842076 34.0 25.0 38.0 2.0 39.5 52-53 28.890012206116523 34.5 26.0 38.5 2.0 39.5 54-55 29.53213501662608 35.0 27.0 39.0 2.0 40.0 56-57 29.491271163122892 35.0 27.0 39.0 2.0 40.0 58-59 29.26263757493443 35.0 26.0 39.0 2.0 40.0 60-61 28.94232229416448 35.0 26.0 39.0 2.0 40.0 62-63 28.55921166635444 34.0 26.0 38.0 2.0 40.0 64-65 28.14473395349382 34.0 25.0 38.0 2.0 40.0 66-67 27.761620837626452 34.0 23.5 37.5 2.0 40.0 68-69 27.32395296693518 33.5 22.5 37.0 2.0 39.5 70-71 26.989974299831395 33.0 22.0 36.5 2.0 39.0 72-73 26.522902714031474 33.0 21.0 36.0 2.0 39.0 74-75 26.077663831257027 32.0 20.0 35.5 2.0 38.5 76-77 25.65456602426002 32.0 18.5 35.0 2.0 37.5 78-79 25.182491101536158 32.0 16.0 35.0 2.0 37.0 80-81 24.724076491663546 31.5 9.5 35.0 2.0 36.5 82-83 24.24402090553578 31.0 7.0 35.0 2.0 36.0 84-85 23.828678812289247 31.0 2.0 34.0 2.0 35.5 86-87 23.364120310743722 31.0 2.0 34.0 2.0 35.0 88-89 22.82354960893593 30.5 2.0 34.0 2.0 35.0 90-91 22.31701318963095 30.0 2.0 34.0 2.0 35.0 92-93 21.7730446796553 30.0 2.0 34.0 2.0 35.0 94-95 21.132472367928063 29.0 2.0 34.0 2.0 35.0 96-97 20.487905846056577 29.0 2.0 34.0 2.0 35.0 98 20.085088340670662 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 200642.0 3 33948.0 4 24803.0 5 19716.0 6 18352.0 7 18796.0 8 21575.0 9 24580.0 10 26713.0 11 28587.0 12 28913.0 13 28548.0 14 27251.0 15 29077.0 16 30734.0 17 32948.0 18 33991.0 19 34221.0 20 35264.0 21 37496.0 22 40619.0 23 44952.0 24 51591.0 25 58294.0 26 67348.0 27 77697.0 28 88806.0 29 101741.0 30 117190.0 31 137210.0 32 161559.0 33 192288.0 34 236730.0 35 292976.0 36 363255.0 37 390938.0 38 233291.0 39 23680.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.008405709136966 18.336297110618275 12.796467087383004 24.85883009286176 2 15.765596691818434 19.676319823676078 39.26383942530769 25.29424405919781 3 19.010610700052084 23.72794121737165 29.47525004369525 27.786198038881015 4 13.087647967754346 15.688783053231212 37.063181506526476 34.16038747248797 5 14.048274373968153 36.9670520649221 34.816625243990735 14.168048317119009 6 33.32594548588369 35.53372122948225 17.25564987341602 13.884683411218033 7 28.881193318847785 31.673057522385562 21.295367610335212 18.150381548431444 8 26.386693364246323 34.65158487605532 20.28006112340605 18.681660636292317 9 26.573740164855753 15.62037514050206 19.824811493068566 37.98107320157362 10-11 25.268999362910687 25.450832526299877 28.18051068716222 21.099657423627217 12-13 25.794867178792515 22.831518791974304 27.90864869176654 23.46496533746664 14-15 23.032946130700864 24.51847996597402 25.249362378750973 27.19921152457414 16-17 23.213224052065797 27.42878729466219 26.154058719507606 23.203929933764407 18-19 23.180071243153495 26.765654533661877 27.429990351574567 22.624283871610057 20-21 23.867382113487714 26.119369865842735 27.154019042290408 22.859228978379143 22-23 23.53329730554848 26.031007236369565 26.918922688172785 23.51677276990917 24-25 23.30347711386852 26.119908446980133 27.055326194611233 23.521288244540113 26-27 23.22281947786015 26.346809347964495 26.944300952398248 23.48607022177711 28-29 23.312390757306666 26.557718801692587 26.796397978453708 23.33349246254704 30-31 23.48051000263863 26.321504787168458 26.716113427763734 23.481871782429174 32-33 23.192993966509494 26.351701979500742 26.689189238643092 23.766114815346675 34-35 23.675936529117642 26.27677614528052 26.672562470881328 23.3747248547205 36-37 23.69355639117429 26.020473149252076 26.682163168040262 23.603807291533375 38-39 23.4530898655468 26.20173934264874 26.701195752128605 23.643975039675862 40-41 23.682236455377726 26.024188784141465 26.828589803118035 23.464984957362773 42-43 23.498863499592414 25.99153727129096 26.698670220309285 23.810929008807346 44-45 23.46344510054465 26.03982234900525 26.830991926838045 23.665740623612056 46-47 23.57468009858852 25.972985711246587 26.604810832983667 23.847523357181224 48-49 23.356229595690017 26.086930972888666 26.650212227594245 23.906627203827075 50-51 23.281780517833514 26.188796976432588 26.764500523921075 23.76492198181282 52-53 23.40257589258285 26.042070579962413 26.804604986393237 23.7507485410615 54-55 23.078184908930158 25.93656456173075 26.99879984625097 23.98645068308812 56-57 23.02951184288407 26.05870922350156 26.930137064403638 23.981641869210733 58-59 23.01998592478428 25.813504860944803 27.013997346572065 24.152511867698852 60-61 22.958895477979446 25.80587046235901 27.13463610410175 24.10059795555979 62-63 22.961859228545798 25.72569368026725 27.182590462500528 24.129856628686426 64-65 22.834078318220502 25.684413524672696 27.065852156389504 24.415656000717302 66-67 22.794817503202818 25.688793790130816 26.99147492626236 24.524913780404002 68-69 22.92354293413697 25.494396988413413 27.0567897715376 24.525270305912017 70-71 22.70476036049215 25.33924469724308 27.181713781476642 24.774281160788128 72-73 22.677175969485972 25.265751655160855 27.188430094079425 24.86864228127374 74-75 22.60367933170441 25.431607812424062 27.154955651004258 24.809757204867267 76-77 22.585128081945193 25.168291635808792 27.309113354738567 24.937466927507444 78-79 22.49014917808386 25.136410960565435 27.354928964110663 25.018510897240038 80-81 22.52772862439884 25.04000881089614 27.401887000256984 25.030375564448033 82-83 22.495428799999058 25.00255505557393 27.45806625170998 25.04394989271703 84-85 22.42062754943887 24.963697179929095 27.471833284704417 25.14384198592762 86-87 22.41421204993269 24.858387354942565 27.53558246656259 25.191818128562154 88-89 22.379423186605308 24.63801728786279 27.56917502591387 25.41338449961803 90-91 22.33863580092265 24.619012108611248 27.645474712366514 25.396877378099585 92-93 22.467686266966318 24.394006917580064 27.716031209137494 25.42227560631613 94-95 22.292549624163165 24.23576710818641 27.85067910845896 25.621004159191465 96-97 22.482155451943182 23.939279709793983 27.850564401244505 25.728000437018334 98 22.462675762453475 23.857645004115895 27.778477709713066 25.90120152371756 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 25.0 1 29.5 2 59.0 3 103.5 4 119.0 5 152.5 6 243.0 7 432.5 8 670.5 9 814.0 10 867.5 11 965.5 12 1124.5 13 1275.5 14 1443.0 15 1616.5 16 1662.0 17 1714.5 18 1818.0 19 1882.5 20 1951.0 21 2044.5 22 2314.0 23 2738.0 24 3344.5 25 4347.0 26 6047.0 27 8585.5 28 12108.5 29 16973.5 30 23628.0 31 32341.5 32 40361.0 33 47327.5 34 55704.5 35 65284.0 36 75459.5 37 85278.0 38 93799.0 39 101272.0 40 108125.0 41 115233.0 42 122751.5 43 129719.0 44 136426.0 45 142283.0 46 146236.5 47 148578.0 48 149662.5 49 149396.0 50 148899.0 51 147143.5 52 143553.5 53 140435.5 54 135316.0 55 126861.0 56 114903.5 57 102463.0 58 92021.0 59 79321.0 60 65619.5 61 53582.5 62 43172.5 63 33056.0 64 24055.0 65 17816.0 66 13326.0 67 10056.5 68 7514.0 69 5493.5 70 3955.0 71 2930.5 72 2170.0 73 1581.0 74 1217.5 75 900.0 76 607.5 77 371.0 78 207.0 79 115.0 80 67.5 81 41.5 82 21.5 83 16.5 84 13.5 85 9.0 86 6.0 87 9.0 88 7.5 89 2.5 90 5.0 91 8.0 92 7.5 93 4.5 94 3.5 95 3.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3642223210940427 2 0.023065754964406143 3 0.01806036905207943 4 0.01586502435369052 5 0.021046037841888347 6 0.023446281378793555 7 0.014694173847883102 8 0.00819595354065193 9 0.0 10-11 4.390689396777819E-5 12-13 0.004902936493068564 14-15 0.003132025103034844 16-17 0.005298098538778569 18-19 0.036735434619707755 20-21 0.07617846103409516 22-23 0.09406320251030348 24-25 0.062157526227051334 26-27 0.07213902678905956 28-29 0.05573248407643312 30-31 0.04891227988010491 32-33 0.01860188741101536 34-35 0.3241353269014612 36-37 0.49301587673285874 38-39 0.4485089218808543 40-41 0.458183074185088 42-43 0.40949032877482205 44-45 0.3843463141626077 46-47 0.3829852004496066 48-49 0.3741013722367928 50-51 0.3705302781940802 52-53 0.4303753746721619 54-55 0.42948260116148373 56-57 0.4006065005620082 58-59 0.3856488853503185 60-61 0.40177735106781565 62-63 0.38225341888347697 64-65 0.4298484919445485 66-67 0.45109942862495317 68-69 0.39406437336080935 70-71 0.35211865399025855 72-73 0.33926856968902214 74-75 0.3219985247283627 76-77 0.31970073061071563 78-79 0.31886649962532787 80-81 0.3350096009741476 82-83 0.3309408954664668 84-85 0.3302237495316598 86-87 0.3165833411390034 88-89 0.35873395934807045 90-91 0.3381708973398277 92-93 0.3286431013488198 94-95 0.33519986418134134 96-97 0.334526625140502 98 0.3286284657174972 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3416320.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.56099170534197 #Duplication Level Percentage of deduplicated Percentage of total 1 77.57874034758602 47.75824191048621 2 12.035159854201858 14.817927519139703 3 4.45347525799645 8.224810602523954 4 2.146909639352674 5.286635460012346 5 1.1643482987475677 3.583921798066403 6 0.6900628535803782 2.548857216325576 7 0.445111204246614 1.9181041006806405 8 0.2936177200068819 1.4460318420708063 9 0.21178280123812457 1.1733803343318845 >10 0.9282537815524319 9.614742523209793 >50 0.03903251346745478 1.6402315900552036 >100 0.012215543896852404 1.2942053982127604 >500 8.123381596268447E-4 0.33490881134976885 >1k 4.778459670401158E-4 0.358000893534928 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.927126264518546E-5 2 0.0 0.0 0.0 0.0 2.927126264518546E-5 3 0.0 0.0 0.0 2.927126264518546E-5 2.927126264518546E-5 4 0.0 0.0 0.0 1.1708505058074185E-4 2.927126264518546E-5 5 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 6 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 7 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 8 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 9 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 10-11 0.0 0.0 0.0 1.463563132259273E-4 2.927126264518546E-5 12-13 0.0 0.0 0.0 2.1953446983889095E-4 1.6099194454852005E-4 14-15 0.0 1.463563132259273E-5 0.0 2.341701011614837E-4 1.902632071937055E-4 16-17 0.0 5.854252529037092E-5 0.0 2.6344136380666914E-4 2.1953446983889095E-4 18-19 0.0 5.854252529037092E-5 0.0 2.927126264518546E-4 2.6344136380666914E-4 20-21 0.0 1.7562757587111276E-4 0.0 2.927126264518546E-4 3.0734825777444733E-4 22-23 0.0 1.7562757587111276E-4 0.0 4.683402023229674E-4 3.219838890970401E-4 24-25 0.0 2.0489883851629824E-4 0.0 7.756884600974148E-4 3.219838890970401E-4 26-27 0.0 2.341701011614837E-4 0.0 0.0015221056575496442 3.219838890970401E-4 28-29 0.0 2.341701011614837E-4 0.0 0.0069519248782315465 3.219838890970401E-4 30-31 0.0 2.780769951292619E-4 0.0 0.03247646590483327 3.366195204196328E-4 32-33 0.0 3.0734825777444733E-4 0.0 0.08703809947545897 3.512551517422255E-4 34-35 0.0 3.219838890970401E-4 0.0 0.1584892515923567 3.512551517422255E-4 36-37 0.0 3.219838890970401E-4 0.0 0.28034551798426377 3.512551517422255E-4 38-39 0.0 3.80526414387411E-4 0.0 0.4814683636193331 3.80526414387411E-4 40-41 0.0 3.951620457100037E-4 0.0 0.7137211970775572 3.80526414387411E-4 42-43 0.0 4.8297583364556015E-4 0.0 0.9617805123641814 3.951620457100037E-4 44-45 0.0 5.561539902585238E-4 0.0 1.263230610715624 4.097976770325965E-4 46-47 0.0 5.561539902585238E-4 0.0 1.6134759038965905 4.097976770325965E-4 48-49 0.0 5.561539902585238E-4 0.0 1.9895823576245786 4.097976770325965E-4 50-51 0.0 5.561539902585238E-4 0.0 2.392867178718621 4.3906893967778196E-4 52-53 0.0 6.146965155488947E-4 0.0 2.8103631978269012 4.976114649681529E-4 54-55 0.0 6.732390408392656E-4 0.0 3.281323178156613 4.976114649681529E-4 56-57 0.0 6.732390408392656E-4 0.0 3.8092450355938556 4.976114649681529E-4 58-59 0.0 7.317815661296366E-4 0.0 4.367667548707381 4.976114649681529E-4 60-61 0.0 7.317815661296366E-4 0.0 4.963396286062196 4.976114649681529E-4 62-63 0.0 7.317815661296366E-4 0.0 5.569252880292244 5.561539902585238E-4 64-65 0.0 7.61052828774822E-4 0.0 6.222836268265268 5.707896215811166E-4 66-67 2.927126264518546E-5 7.61052828774822E-4 0.0 6.96096969838891 6.000608842263019E-4 68-69 2.927126264518546E-5 7.61052828774822E-4 0.0 7.757953002060697 6.146965155488947E-4 70-71 2.927126264518546E-5 7.61052828774822E-4 0.0 8.591788825402773 6.293321468714874E-4 72-73 2.927126264518546E-5 7.61052828774822E-4 0.0 9.437991757212439 6.732390408392656E-4 74-75 2.927126264518546E-5 7.61052828774822E-4 0.0 10.31080226676658 6.732390408392656E-4 76-77 2.927126264518546E-5 7.61052828774822E-4 0.0 11.250922044773322 6.878746721618583E-4 78-79 2.927126264518546E-5 7.61052828774822E-4 0.0 12.260736699138253 7.171459348070438E-4 80-81 2.927126264518546E-5 7.61052828774822E-4 0.0 13.307286788122891 7.317815661296366E-4 82-83 2.927126264518546E-5 7.61052828774822E-4 0.0 14.365077041963282 7.317815661296366E-4 84-85 2.927126264518546E-5 8.19595354065193E-4 0.0 15.421462275196703 7.61052828774822E-4 86 2.927126264518546E-5 8.488666167103784E-4 0.0 16.2460483795429 7.61052828774822E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2265 0.0 45.715496 1 GTATCAA 4565 0.0 43.44958 1 TCAACGC 5495 0.0 35.142834 4 ATCAACG 5580 0.0 34.689705 3 CAACGCA 5640 0.0 33.995354 5 TATCAAC 5970 0.0 32.50085 2 AACGCAG 6065 0.0 31.834452 6 GTACATG 8220 0.0 26.70519 1 ACGCAGA 7125 0.0 26.258152 7 CGCAGAG 7290 0.0 25.222044 8 TACATGG 8720 0.0 24.670906 2 ACATGGG 8920 0.0 23.243202 3 GCAGAGT 8610 0.0 20.396362 9 CATGGGG 5955 0.0 19.949884 4 CGCCGTA 570 0.0 19.373823 92 GAGTACA 6065 0.0 18.74197 1 AGAGTAC 7025 0.0 17.818724 10-11 CAGAGTA 7825 0.0 16.465778 10-11 AGTACAT 6500 0.0 15.948647 2 GTATAGC 1070 0.0 15.91355 1 >>END_MODULE