##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920861_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3978438 Sequences flagged as poor quality 0 Sequence length 101 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.327790454444685 31.0 30.0 34.0 27.0 34.0 2 30.341845216640298 31.0 30.0 34.0 26.0 34.0 3 30.48271432155032 31.0 30.0 34.0 27.0 34.0 4 34.12616157396445 35.0 35.0 37.0 30.0 37.0 5 33.66484735969242 35.0 35.0 37.0 28.0 37.0 6 33.609349950910385 35.0 35.0 37.0 28.0 37.0 7 33.437168054397226 35.0 35.0 37.0 28.0 37.0 8 33.36788081151447 35.0 35.0 37.0 27.0 37.0 9 34.71721967264539 38.0 35.0 39.0 27.0 39.0 10-11 34.53230740305617 38.0 34.0 39.0 27.0 39.0 12-13 34.35166879564291 37.0 34.0 39.0 27.0 39.0 14-15 35.26580381546728 38.5 34.0 40.0 27.0 41.0 16-17 35.14002555776915 38.0 34.0 40.0 26.0 41.0 18-19 35.05269542971387 38.5 34.0 40.0 25.5 41.0 20-21 34.938819204924144 38.5 34.0 40.0 25.0 41.0 22-23 34.798699012024315 38.0 34.0 40.0 25.0 41.0 24-25 34.62980735152841 38.0 33.5 40.0 24.0 41.0 26-27 34.45104108697936 38.0 33.0 40.0 24.0 41.0 28-29 34.396330670479216 38.0 33.0 40.0 24.0 41.0 30-31 34.398512808293106 38.0 33.0 40.0 24.0 41.0 32-33 34.25653686195436 38.0 33.0 40.0 23.0 41.0 34-35 34.09948653215156 38.0 33.0 40.0 22.5 41.0 36-37 33.91432894015189 38.0 33.0 40.0 21.5 41.0 38-39 33.739470365002546 38.0 33.0 40.0 19.5 41.0 40-41 33.52163688362116 38.0 32.0 40.0 18.5 41.0 42-43 33.565735220707225 38.0 33.0 40.0 18.5 41.0 44-45 33.43041565559146 38.0 32.0 40.0 18.0 41.0 46-47 33.19906857917605 38.0 32.0 40.0 15.5 41.0 48-49 32.9535454618119 37.5 32.0 40.0 14.5 41.0 50-51 32.705034865442165 37.0 31.0 40.0 12.5 41.0 52-53 32.45549861528569 37.0 31.0 40.0 9.0 41.0 54-55 32.18662110607228 37.0 31.0 40.0 8.5 41.0 56-57 31.870573576866096 36.0 30.5 39.5 7.5 41.0 58-59 31.554210345869407 36.0 30.0 39.0 6.5 41.0 60-61 31.232073994869342 35.5 29.5 39.0 2.0 40.0 62-63 30.913535035609453 35.0 29.0 39.0 2.0 40.0 64-65 30.518295873908304 35.0 29.0 38.5 2.0 40.0 66-67 30.09100858175998 34.5 28.0 38.0 2.0 40.0 68-69 29.647915714659874 34.0 28.0 37.5 2.0 40.0 70-71 29.215064429808884 34.0 28.0 37.0 2.0 39.0 72-73 28.766785230786553 34.0 26.5 36.0 2.0 39.0 74-75 28.317796833832777 34.0 26.0 36.0 2.0 39.0 76-77 26.837884239995695 31.5 25.0 34.5 2.0 36.5 78-79 27.67619276711111 33.0 26.0 35.0 2.0 37.0 80-81 27.69122215804293 33.0 26.0 35.0 2.0 37.0 82-83 27.340310192090463 33.0 26.0 35.0 2.0 36.0 84-85 27.00924219505243 33.0 25.5 35.0 2.0 36.0 86-87 26.455438290102798 33.0 25.0 35.0 2.0 35.5 88-89 26.081363841789162 32.0 23.5 35.0 2.0 35.0 90-91 25.70616445449194 32.0 22.5 35.0 2.0 35.0 92-93 25.39035483272581 32.0 20.0 34.0 2.0 35.0 94-95 25.002792678935805 32.0 19.0 34.0 2.0 35.0 96-97 24.472201904365484 32.0 12.0 34.0 2.0 35.0 98-99 23.861942802677834 31.5 2.0 34.0 2.0 35.0 100-101 21.6499552085517 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 87093.0 3 40132.0 4 21794.0 5 15513.0 6 12921.0 7 13109.0 8 14317.0 9 16980.0 10 19239.0 11 21640.0 12 24105.0 13 26433.0 14 28657.0 15 30489.0 16 32106.0 17 33507.0 18 32836.0 19 32238.0 20 32487.0 21 33972.0 22 36734.0 23 41627.0 24 48467.0 25 57143.0 26 67257.0 27 80057.0 28 94706.0 29 111665.0 30 132150.0 31 155511.0 32 186850.0 33 228839.0 34 288439.0 35 374828.0 36 500527.0 37 606362.0 38 371300.0 39 26407.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.627602481155854 19.03984909575821 13.38912492161391 24.94342350147202 2 16.053787943911658 20.29713671546471 38.64873601146983 25.000339329153803 3 19.690315931044452 23.82631648409661 28.958640497244165 27.524727087614774 4 13.74347356203425 16.010949608822234 35.962461213431645 34.283115615711864 5 14.484485289681661 36.94253122046373 34.23700906951957 14.33597442033503 6 34.14036442967121 35.06521512120187 16.811347317857507 13.983073131269414 7 29.66348971097288 31.287996101466582 20.47188162634893 18.576632561211607 8 26.535207481964274 35.340261562722254 19.525068818387407 18.599462136926068 9 26.37856627747901 16.08075402643724 19.21549132162288 38.325188374460865 10-11 25.828552663282505 25.50085212206389 27.45531627914877 21.215278935504834 12-13 26.24304661784195 22.539898393897843 27.487323143364705 23.729731844895493 14-15 23.224692874739247 24.3034138506047 24.91785939823996 27.554033876416096 16-17 23.67582221200477 27.392147280186553 25.579126956319648 23.35290355148903 18-19 23.555732594632612 26.70071552408542 26.959817551923543 22.783734329358424 20-21 24.204470219699008 25.940641312003372 26.80685984529315 23.048028623004466 22-23 23.74374855348823 25.79994616460549 26.622143453716657 23.83416182818962 24-25 23.58184330881641 26.00637800493692 26.685990143769185 23.72578854247749 26-27 23.54163268524554 26.171351376299434 26.64291394149817 23.644101996956856 28-29 23.53236192774732 26.40165618558814 26.46240780074878 23.60357408591576 30-31 23.862121711338876 26.142812372444507 26.39528661118452 23.599779305032097 32-33 23.5601085201929 26.145270219303317 26.380099770186614 23.91452149031716 34-35 23.876197401839917 26.08347071648956 26.507983097943562 23.53234878372696 36-37 23.884668090272196 25.98595912793078 26.45284006034505 23.676532721451974 38-39 23.785531885791066 26.100504081835858 26.4817335708244 23.632230461548673 40-41 23.956947652470674 25.867663020181087 26.587485860869702 23.587903466478537 42-43 23.693267147624198 25.834712202273664 26.494633597945448 23.977387052156693 44-45 23.64598585062741 25.93116345445629 26.614985683304926 23.807865011611376 46-47 23.622802261111538 25.80757620464611 26.562252290976485 24.007369243265867 48-49 23.489653587873992 25.938288537173833 26.577577100993594 23.994480773958585 50-51 23.543333799668638 26.028058804504823 26.5610385777452 23.86756881808134 52-53 23.611881289663497 25.884040688218708 26.528824675967797 23.975253346149998 54-55 23.405408489991405 25.690591415487095 26.706697526930455 24.19730256759104 56-57 23.362567009989238 25.877842956097453 26.58153503635975 24.17805499755356 58-59 23.273215149782256 25.820801729392766 26.645304811758862 24.260678309066115 60-61 23.369861653309265 25.763835769008608 26.687228119620137 24.17907445806199 62-63 23.23229098426798 25.839139849602894 26.585469288351288 24.34309987777784 64-65 23.00566834755961 25.650670972527763 26.61691314051391 24.726747539398716 66-67 23.007537193108448 25.856200896597574 26.465017707651256 24.67124420264272 68-69 23.18293493059227 25.76424102840652 26.3646974779546 24.688126563046605 70-71 22.970326029022818 25.540846649704847 26.45737587867939 25.031451442592946 72-73 22.926250463486213 25.661966443912476 26.37394664938917 25.037836443212143 74-75 22.868563501900752 25.740118193502553 26.249916037883708 25.14140226671299 76-77 22.852459772426492 25.611173966858786 26.466524557654513 25.06984170306021 78-79 22.81686980421969 25.65282533977356 26.355792545873552 25.174512310133196 80-81 22.7299975400694 25.731276276602795 26.250488812218048 25.288237371109755 82-83 22.74271810491238 25.725135170193276 26.261064749966568 25.271081974927778 84-85 22.701483742484125 25.640913805577497 26.192421455064135 25.465180996874242 86-87 22.49592232769905 25.64589031247389 26.2834223891335 25.574764970693565 88-89 22.54771408592336 25.577737343010863 26.20252573816812 25.672022832897657 90-91 22.39620020953133 25.61936367900123 26.161262006656916 25.823174104810526 92-93 22.436130277535202 25.557108544601228 26.120144849230577 25.886616328633 94-95 22.280869612975398 25.5182843413687 26.118929250409177 26.081916795246723 96-97 22.264461451295613 25.387480374615475 26.174368430869126 26.173689743219786 98-99 22.17807300151497 25.388048817824494 26.107375987890308 26.326502192770228 100-101 22.224720535895404 25.344631129502275 26.122387317604602 26.30826101699772 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 48.0 1 37.5 2 53.0 3 89.0 4 77.5 5 70.0 6 140.0 7 285.0 8 463.5 9 526.5 10 454.0 11 407.5 12 417.0 13 469.0 14 535.0 15 605.5 16 703.0 17 778.5 18 871.5 19 1007.5 20 1173.0 21 1373.0 22 1645.5 23 2071.5 24 2625.5 25 3239.0 26 4078.0 27 5352.5 28 7152.5 29 9833.5 30 14155.5 31 20472.0 32 28515.5 33 36908.5 34 45780.0 35 56673.5 36 69067.0 37 80839.0 38 92291.5 39 103416.0 40 114643.0 41 125810.0 42 136231.5 43 146654.0 44 155380.0 45 163951.5 46 171823.0 47 177267.0 48 183187.0 49 186018.5 50 184625.5 51 182182.5 52 177552.5 53 171265.5 54 162483.5 55 150216.0 56 135503.5 57 119007.0 58 104890.5 59 91763.5 60 76712.0 61 63187.0 62 51072.5 63 38549.5 64 28117.5 65 21332.0 66 16413.0 67 12639.0 68 9569.5 69 7024.5 70 5110.0 71 3876.0 72 2931.5 73 2227.0 74 1621.0 75 1139.0 76 759.0 77 450.0 78 260.5 79 149.5 80 86.5 81 40.5 82 13.5 83 8.0 84 4.5 85 1.5 86 1.5 87 2.0 88 1.0 89 2.0 90 2.0 91 1.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19374437907540598 2 0.0 3 0.012894507844535972 4 0.014553450374242355 5 0.006987667019066277 6 0.10765531598079447 7 0.14231716065450814 8 0.12406879282773793 9 0.14158823136115228 10-11 0.1140020279315651 12-13 0.11468068623917224 14-15 0.11591232539001486 16-17 0.06708663048161112 18-19 0.07967951241165502 20-21 0.03762783283288567 22-23 0.08440498507203079 24-25 0.057132975303372836 26-27 0.0656916106270853 28-29 0.03994029817732487 30-31 0.02519833160652497 32-33 0.032625869750892184 34-35 0.020497994439023556 36-37 0.024595079777540833 38-39 0.0328269536938869 40-41 0.025160628367213465 42-43 0.013573166152143127 44-45 0.027359983993718136 46-47 0.03437278650565875 48-49 0.008646609548772659 50-51 0.015420624878407055 52-53 0.007138479976312311 54-55 0.012743694887289936 56-57 0.005190479278551029 58-59 0.004097085338517277 60-61 0.023388576119572558 62-63 0.01095907489321186 64-65 0.007402402651492873 66-67 0.04087031141367542 68-69 0.09120413589453952 70-71 0.022068962743669752 72-73 0.04480401604850949 74-75 0.08623987605185754 76-77 0.2603408674459675 78-79 0.08086088057674896 80-81 0.017180109379610793 82-83 0.01231639150842617 84-85 0.0131709982661537 86-87 0.2713250778320537 88-89 0.6288774639695277 90-91 0.2648024174311627 92-93 0.3529023199557213 94-95 0.0011939359115311085 96-97 0.004323304774386329 98-99 0.00344356252378446 100-101 0.005001963081993486 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3978438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.99217717115416 #Duplication Level Percentage of deduplicated Percentage of total 1 70.51901346631453 35.253990151430024 2 13.264426205920952 13.262350899202008 3 6.022453558972794 9.032266959756473 4 3.148097140223366 6.29520919944201 5 1.877132363931799 4.692096685569296 6 1.248382223917425 3.7445607189239607 7 0.8556479584499262 2.994299303447555 8 0.5944262896454969 2.3773331509719586 9 0.4388096332968933 1.9743344038968726 >10 1.9443872431072948 16.145445442816296 >50 0.06551377016391612 2.2260543604057896 >100 0.02100454689367836 1.6849667293119568 >500 5.039994164732728E-4 0.18012640026558402 >1k 2.0159974552107397E-4 0.1369655945602304 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5135492874339126E-5 2 0.0 0.0 0.0 0.0 2.5135492874339126E-5 3 0.0 0.0 0.0 0.0 2.5135492874339126E-5 4 0.0 0.0 0.0 0.0 2.5135492874339126E-5 5 0.0 0.0 0.0 0.0 2.5135492874339126E-5 6 0.0 0.0 0.0 0.0 7.540647862301737E-5 7 0.0 0.0 0.0 0.0 7.540647862301737E-5 8 0.0 0.0 0.0 2.5135492874339126E-5 1.005419714973565E-4 9 0.0 0.0 0.0 7.540647862301737E-5 1.5081295724603475E-4 10-11 0.0 0.0 0.0 8.797422506018694E-5 1.5081295724603475E-4 12-13 0.0 0.0 0.0 1.7594845012037388E-4 1.5081295724603475E-4 14-15 0.0 0.0 0.0 1.7594845012037388E-4 2.3878718230622168E-4 16-17 0.0 0.0 0.0 1.8851619655754344E-4 3.5189690024074776E-4 18-19 0.0 0.0 0.0 2.1365168943188257E-4 3.770323931150869E-4 20-21 0.0 0.0 0.0 3.1419366092923906E-4 3.770323931150869E-4 22-23 0.0 0.0 0.0 3.8960013955225645E-4 6.158195754213086E-4 24-25 0.0 0.0 2.5135492874339126E-5 5.529808432354607E-4 8.671745041646999E-4 26-27 0.0 0.0 2.5135492874339126E-5 0.0012819101365912954 8.797422506018694E-4 28-29 0.0 0.0 2.5135492874339126E-5 0.00545440195373159 9.048777434762086E-4 30-31 0.0 0.0 2.5135492874339126E-5 0.023765608512687643 9.174454899133781E-4 32-33 0.0 0.0 2.5135492874339126E-5 0.06640797217400396 9.802842220992258E-4 34-35 0.0 0.0 2.5135492874339126E-5 0.1253632707107664 0.0011059616864709215 36-37 0.0 0.0 2.5135492874339126E-5 0.22252451841652426 0.0011436649257824303 38-39 0.0 0.0 2.5135492874339126E-5 0.3863576609714667 0.0011939359115311085 40-41 0.0 0.0 2.5135492874339126E-5 0.5721340888057072 0.0012190714044054475 42-43 0.0 0.0 2.5135492874339126E-5 0.7687313463223506 0.0012819101365912954 44-45 0.0 0.0 2.5135492874339126E-5 1.0063748637027898 0.0013321811223399736 46-47 0.0 0.0 2.5135492874339126E-5 1.2877792741774536 0.0014201553474001605 48-49 0.0 0.0 2.5135492874339126E-5 1.595852442591791 0.0015081295724603476 50-51 0.0 1.2567746437169563E-5 2.5135492874339126E-5 1.9273393226185753 0.0015081295724603476 52-53 0.0 2.5135492874339126E-5 2.5135492874339126E-5 2.2578836216625717 0.001608671543957704 54-55 0.0 2.5135492874339126E-5 2.5135492874339126E-5 2.634551550130981 0.00172178126189223 56-57 0.0 2.5135492874339126E-5 2.5135492874339126E-5 3.073191036281073 0.0017469167547665694 58-59 0.0 2.5135492874339126E-5 2.5135492874339126E-5 3.5458137087972714 0.001784619994078078 60-61 0.0 2.5135492874339126E-5 2.5135492874339126E-5 4.051941993314965 0.001784619994078078 62-63 0.0 2.5135492874339126E-5 2.5135492874339126E-5 4.571693714970548 0.0018600264727010951 64-65 0.0 2.5135492874339126E-5 2.5135492874339126E-5 5.119861111320573 0.0018600264727010951 66-67 0.0 2.5135492874339126E-5 2.5135492874339126E-5 5.737063138849971 0.0018600264727010951 68-69 0.0 2.5135492874339126E-5 2.5135492874339126E-5 6.416098478850243 0.0018725942191382648 70-71 0.0 2.5135492874339126E-5 2.5135492874339126E-5 7.145568185302875 0.001922865204886943 72-73 0.0 2.5135492874339126E-5 2.5135492874339126E-5 7.878632267236538 0.0021616523871931647 74-75 0.0 2.5135492874339126E-5 2.5135492874339126E-5 8.63097527220482 0.002186787880067504 76-77 0.0 2.5135492874339126E-5 2.5135492874339126E-5 9.451096133708756 0.002186787880067504 78-79 0.0 2.5135492874339126E-5 2.5135492874339126E-5 10.339057690480535 0.002186787880067504 80-81 0.0 2.5135492874339126E-5 2.5135492874339126E-5 11.263566253891604 0.0022244911193790126 82-83 1.2567746437169563E-5 2.5135492874339126E-5 2.5135492874339126E-5 12.196444936429826 0.0023124653444391995 84-85 2.5135492874339126E-5 2.5135492874339126E-5 2.5135492874339126E-5 13.132830020224016 0.0023124653444391995 86-87 2.5135492874339126E-5 2.5135492874339126E-5 2.5135492874339126E-5 14.11517535273894 0.0023753040766250474 88-89 2.5135492874339126E-5 2.5135492874339126E-5 2.5135492874339126E-5 15.156149222383256 0.0024381428088108953 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5730 0.0 42.32702 1 GGTATCA 3480 0.0 40.859596 1 TCAACGC 7175 0.0 32.74524 4 ATCAACG 7245 0.0 32.494377 3 CAACGCA 7325 0.0 32.13504 5 TATCAAC 7655 0.0 31.186049 2 AACGCAG 7860 0.0 29.947731 6 GTACATG 11850 0.0 25.684065 1 TACATGG 12010 0.0 24.777763 2 ACGCAGA 9400 0.0 24.38507 7 ACATGGG 12195 0.0 23.196869 3 CGCAGAG 9815 0.0 22.917408 8 GAGTACA 9130 0.0 20.261936 1 GCAGAGT 11225 0.0 19.488867 9 CATGGGG 8460 0.0 19.07539 4 AGTACAT 8990 0.0 18.794374 2 GTATATA 1575 0.0 18.72032 1 AGAGTAC 9495 0.0 18.066174 10-11 GTATAGC 1495 0.0 17.813488 1 TATACCG 235 5.179001E-5 16.155743 5 >>END_MODULE