##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920860_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2859974 Sequences flagged as poor quality 0 Sequence length 101 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.225360789993196 31.0 30.0 34.0 26.0 34.0 2 30.228783898035438 31.0 30.0 34.0 26.0 34.0 3 30.371627504305984 31.0 30.0 34.0 26.0 34.0 4 34.01118122052858 35.0 35.0 37.0 30.0 37.0 5 33.52515827066959 35.0 35.0 37.0 28.0 37.0 6 33.47010742055697 35.0 35.0 37.0 28.0 37.0 7 33.285275670338265 35.0 33.0 37.0 27.0 37.0 8 33.20885224830715 35.0 33.0 37.0 27.0 37.0 9 34.54381788086185 38.0 34.0 39.0 27.0 39.0 10-11 34.34767344038792 37.5 34.0 39.0 27.0 39.0 12-13 34.161622098662434 37.0 34.0 39.0 26.0 39.0 14-15 35.051066897810955 38.0 34.0 40.0 26.0 41.0 16-17 34.91640570858337 38.0 34.0 40.0 25.0 41.0 18-19 34.81376281742422 38.0 33.5 40.0 25.0 41.0 20-21 34.691264326179194 38.0 34.0 40.0 24.5 41.0 22-23 34.53860437192786 38.0 33.5 40.0 24.0 41.0 24-25 34.35717230296499 38.0 33.0 40.0 23.0 41.0 26-27 34.15835843262911 38.0 33.0 40.0 22.5 41.0 28-29 34.09777046924203 38.0 33.0 40.0 22.5 41.0 30-31 34.08557105763899 38.0 33.0 40.0 22.0 41.0 32-33 33.93720572284923 38.0 33.0 40.0 21.0 41.0 34-35 33.76497653475172 38.0 33.0 40.0 19.5 41.0 36-37 33.562515428461936 38.0 32.0 40.0 18.5 41.0 38-39 33.36612081088849 38.0 32.0 40.0 17.5 41.0 40-41 33.124381025841494 38.0 32.0 40.0 15.5 41.0 42-43 33.15312132208195 38.0 32.0 40.0 15.5 41.0 44-45 33.007269471680516 38.0 32.0 40.0 15.0 41.0 46-47 32.744792260349215 37.0 31.0 40.0 12.5 41.0 48-49 32.466587108833856 37.0 31.0 40.0 9.0 41.0 50-51 32.18996151713267 37.0 31.0 40.0 8.0 41.0 52-53 31.91065583113693 36.5 30.0 40.0 7.5 41.0 54-55 31.610537543348297 36.0 30.0 39.0 6.0 41.0 56-57 31.260548872122612 36.0 29.5 39.0 2.0 40.5 58-59 30.905117668901887 35.0 29.0 39.0 2.0 40.0 60-61 30.552281419341575 35.0 29.0 39.0 2.0 40.0 62-63 30.212097207876717 35.0 28.0 38.0 2.0 40.0 64-65 29.78680015972173 34.0 28.0 38.0 2.0 40.0 66-67 29.33260879294707 34.0 28.0 37.0 2.0 40.0 68-69 28.87897459906978 34.0 26.5 37.0 2.0 39.0 70-71 28.445225201347984 34.0 26.0 36.0 2.0 39.0 72-73 28.004114722721255 33.0 26.0 36.0 2.0 39.0 74-75 27.567696594444563 33.0 26.0 35.0 2.0 37.5 76-77 26.147688580385697 31.5 23.5 34.0 2.0 36.0 78-79 26.99208699100062 32.5 25.0 35.0 2.0 36.0 80-81 27.02566124727008 33.0 25.0 35.0 2.0 36.0 82-83 26.699704088218986 33.0 25.0 35.0 2.0 36.0 84-85 26.3803842272692 33.0 24.5 35.0 2.0 35.5 86-87 25.845974823547348 32.0 23.0 35.0 2.0 35.0 88-89 25.485542700737838 32.0 20.5 35.0 2.0 35.0 90-91 25.11346396855356 32.0 19.5 34.0 2.0 35.0 92-93 24.80039731130423 32.0 18.0 34.0 2.0 35.0 94-95 24.403396499408736 31.5 13.5 34.0 2.0 35.0 96-97 23.858015667275296 31.0 2.0 34.0 2.0 35.0 98-99 23.237286947363856 31.0 2.0 34.0 2.0 35.0 100-101 21.031151157318213 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 67647.0 3 31154.0 4 17481.0 5 12339.0 6 10581.0 7 10690.0 8 11962.0 9 14037.0 10 15719.0 11 17210.0 12 19046.0 13 21048.0 14 22321.0 15 23682.0 16 25259.0 17 25988.0 18 25424.0 19 24431.0 20 24565.0 21 25606.0 22 27508.0 23 31481.0 24 36278.0 25 42670.0 26 50699.0 27 59915.0 28 70397.0 29 83287.0 30 98164.0 31 116005.0 32 138767.0 33 170473.0 34 213354.0 35 276984.0 36 366347.0 37 408876.0 38 209740.0 39 12838.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.514879320643274 18.264473377673223 12.970276391547978 25.250370910135523 2 16.771026589752214 20.02168551182633 37.25373027866687 25.953557619754587 3 20.132514666345877 23.42240614797553 28.2710427443202 28.174036441358396 4 14.279139854586173 15.62130297531476 34.41623772583433 35.68331944426473 5 15.161536113307292 36.46882626287563 33.26555382386582 15.104083799951255 6 35.20590060665971 33.73687469611883 16.419157019186915 14.638067678034549 7 30.697363504924542 30.633003233070678 19.740044730038775 18.92958853196601 8 27.73048550405745 33.7866389669897 19.233875668641566 19.248999860311287 9 27.26297691747437 15.323967729284554 18.565991091937924 38.84706426130315 10-11 26.583174244165274 24.647411903516264 26.681139448926906 22.08827440339155 12-13 27.052069358131845 21.810967322423597 26.80590452536168 24.33105879408287 14-15 24.083071510462705 23.46154048117063 24.09773942571086 28.357648582655802 16-17 24.511621828579404 26.508626382979315 24.748552793197913 24.23119899524336 18-19 24.456796936485546 25.69651176340699 26.145222287116642 23.701469012990824 20-21 25.29076234476351 24.857635760218045 25.797764426709353 24.05383746830909 22-23 24.849808102226028 24.71623031372408 25.796856075094727 24.63710550895517 24-25 24.621326024084624 24.913790434267405 25.82095664323138 24.64392689841659 26-27 24.447450382630233 25.147876355405696 25.81896410712702 24.585709154837055 28-29 24.494753085717992 25.27052229179941 25.734742025038344 24.499982597444255 30-31 24.693474201539512 25.160751827158517 25.583331963496352 24.562442007805625 32-33 24.55986880752765 25.129787263438285 25.525571741642327 24.784772187391734 34-35 24.713336902887946 25.11260359373246 25.65121930832943 24.522840195050165 36-37 24.877218783580673 24.94727205799418 25.53753122538146 24.63797793304369 38-39 24.76900775072057 24.996427977444753 25.5943417064107 24.640222565423976 40-41 24.751509983756055 24.985612332316563 25.642469911806355 24.620407772121027 42-43 24.794456762788215 24.857718321005372 25.536564848430167 24.811260067776246 44-45 24.525186128996044 24.890081852339822 25.73305287927663 24.85167913938751 46-47 24.666392208945105 24.86441800214133 25.622435484655142 24.84675430425842 48-49 24.514208792874616 24.87882867044528 25.60735156479346 24.999610971886643 50-51 24.367558229301178 25.163888347320373 25.60679910858308 24.86175431479537 52-53 24.600409787698222 24.905136717995326 25.67782028891449 24.816633205391966 54-55 24.27646818558224 24.901821383809672 25.764936438307114 25.05677399230098 56-57 24.20559296679565 25.00750050877577 25.598204913200405 25.188701611228176 58-59 24.17871086527835 24.74578635896272 25.76097999596832 25.31452277979061 60-61 24.113959976455504 24.77463629664526 25.874481117013552 25.23692260988568 62-63 24.000797298974877 24.86945103517732 25.752791857759068 25.37695980808874 64-65 23.927935381515585 24.796266372560574 25.69260691272875 25.583191333195092 66-67 23.898892898188226 24.905409510836915 25.582291408142066 25.613406182832794 68-69 24.093519748941585 24.661302475761573 25.567616488464985 25.677561286831857 70-71 23.82211335431613 24.605549593584364 25.64761317044416 25.92472388165535 72-73 23.87236012693464 24.620461538219356 25.51071113798484 25.99646719686116 74-75 23.781262319926743 24.733487120432518 25.499949517281976 25.98530104235876 76-77 23.790594893699808 24.452697971449382 25.696522797641848 26.060184337208963 78-79 23.72856178281562 24.519208814066197 25.592797182449484 26.159432220668698 80-81 23.669597877917294 24.502326492286116 25.594247854923402 26.233827774873188 82-83 23.624231905688692 24.457776953262762 25.64768384037801 26.27030730067053 84-85 23.61243755606185 24.39495167971352 25.494542002017788 26.498068762206838 86-87 23.54136416377903 24.31158187470188 25.627019132820088 26.520034828699004 88-89 23.404101470787715 24.246577342807242 25.52399638210044 26.8253248043046 90-91 23.32309876808323 24.213216700777014 25.605567510003024 26.858117021136728 92-93 23.428630880040394 24.10531241233133 25.48960678292136 26.97644992470692 94-95 23.245055041499224 23.96384810413391 25.656492652100592 27.134604202266278 96-97 23.29948766436211 23.7526417524872 25.711699659142244 27.23617092400844 98-99 23.163602770199724 23.800328406995295 25.62525656796507 27.41081225483991 100-101 23.274128630665494 23.627000057870703 25.691725380954455 27.407145930509348 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 58.0 1 44.0 2 51.5 3 85.5 4 77.5 5 74.0 6 134.5 7 289.5 8 423.0 9 436.0 10 397.0 11 370.5 12 351.0 13 377.5 14 443.5 15 503.0 16 564.0 17 605.5 18 693.5 19 793.0 20 870.0 21 976.0 22 1170.5 23 1446.0 24 1711.0 25 2063.5 26 2601.5 27 3288.5 28 4171.0 29 5495.5 30 7539.5 31 10911.5 32 15444.0 33 20036.0 34 24879.5 35 30626.0 36 37260.5 37 43521.0 38 49838.5 39 56207.0 40 61752.5 41 67264.0 42 73047.0 43 80552.5 44 88445.5 45 95547.0 46 103731.0 47 112074.0 48 119373.5 49 125050.0 50 128035.0 51 130831.5 52 134752.0 53 138323.5 54 138058.0 55 133347.5 56 125356.0 57 114839.0 58 105330.5 59 94213.0 60 80128.0 61 66465.0 62 54265.5 63 41980.0 64 31114.5 65 23401.0 66 17325.5 67 12735.0 68 9398.0 69 6818.0 70 5082.0 71 3831.0 72 2859.0 73 2386.0 74 1878.5 75 1344.0 76 953.0 77 609.0 78 325.0 79 154.0 80 88.0 81 52.0 82 27.0 83 12.0 84 6.5 85 5.0 86 3.0 87 2.0 88 0.5 89 0.5 90 1.0 91 0.5 92 0.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19262412875082083 2 0.0 3 0.012797319136467674 4 0.014370760013902225 5 0.007377689447526446 6 0.11129471806387052 7 0.14598034807309437 8 0.12667947330989723 9 0.14454676860698734 10-11 0.11704651860471459 12-13 0.11718638001604209 14-15 0.11884723427555637 16-17 0.0688292970495536 18-19 0.0818538909794285 20-21 0.038811541643385565 22-23 0.0861196640249177 24-25 0.058654379375476844 26-27 0.06739571758344656 28-29 0.04190597536900685 30-31 0.026328910682404803 32-33 0.033863944217674705 34-35 0.021223969168950488 36-37 0.025227502068200618 38-39 0.033199602513869005 40-41 0.026381358711652623 42-43 0.014598034807309436 44-45 0.028007247618334993 46-47 0.03507024889037453 48-49 0.009912677527837666 50-51 0.016835817388549685 52-53 0.007010553242791718 54-55 0.013636487604432767 56-57 0.005874179275755654 58-59 0.0043881517804008 60-61 0.024720504452138376 62-63 0.011153947553369365 64-65 0.00821685791549154 66-67 0.04208080213316624 68-69 0.09199384330067335 70-71 0.02264006595864158 72-73 0.046766159412638016 74-75 0.0895287859260259 76-77 0.2559988307586013 78-79 0.0809273091293837 80-81 0.018147018119745145 82-83 0.013304316752529917 84-85 0.014300829308238467 86-87 0.270229729361176 88-89 0.6291490761804128 90-91 0.26963531836303406 92-93 0.35351719980671154 94-95 0.0014335794661070346 96-97 0.004545495868144255 98-99 0.0037762581058429206 100-101 0.005262285601197773 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2859974.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.09340167177034 #Duplication Level Percentage of deduplicated Percentage of total 1 69.83218427532016 32.188029194194165 2 12.624716917866023 11.638322957751859 3 5.826257901578886 8.056561371024042 4 3.3457824784520063 6.168739827426385 5 2.049146548783356 4.722606747869658 6 1.3966305985014953 3.8625273098288657 7 0.9961960201891839 3.2142644311679356 8 0.7397197957490311 2.7276961336016003 9 0.5453305736349549 2.2622527057007615 >10 2.518444367919358 19.281881886203134 >50 0.09181582677825972 2.8653704171485517 >100 0.032631290010597724 2.592684431204097 >500 8.38497158987167E-4 0.255963020501508 >1k 3.0490805777850757E-4 0.16309956637757236 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 1.7482676415939444E-5 0.0 12-13 0.0 0.0 0.0 3.496535283187889E-5 0.0 14-15 0.0 0.0 0.0 3.496535283187889E-5 0.0 16-17 0.0 0.0 0.0 5.244802924781833E-5 0.0 18-19 0.0 0.0 0.0 6.993070566375778E-5 0.0 20-21 0.0 0.0 0.0 1.3986141132751555E-4 0.0 22-23 0.0 0.0 0.0 3.321708519028495E-4 0.0 24-25 0.0 0.0 0.0 7.517550858853962E-4 1.7482676415939444E-5 26-27 0.0 0.0 0.0 0.001765750318009884 3.496535283187889E-5 28-29 0.0 0.0 0.0 0.008321753973987177 3.496535283187889E-5 30-31 0.0 0.0 0.0 0.03181847107700979 3.496535283187889E-5 32-33 0.0 0.0 0.0 0.07844476907832029 3.496535283187889E-5 34-35 0.0 0.0 0.0 0.14103275064738352 3.496535283187889E-5 36-37 1.7482676415939444E-5 0.0 0.0 0.24526446743921448 3.496535283187889E-5 38-39 3.496535283187889E-5 0.0 0.0 0.41301074765015344 3.496535283187889E-5 40-41 3.496535283187889E-5 0.0 0.0 0.6113517115889865 3.496535283187889E-5 42-43 3.496535283187889E-5 0.0 0.0 0.8203221427887106 3.496535283187889E-5 44-45 3.496535283187889E-5 0.0 0.0 1.0623348324145603 3.496535283187889E-5 46-47 3.496535283187889E-5 0.0 0.0 1.3548549742060592 3.496535283187889E-5 48-49 3.496535283187889E-5 0.0 0.0 1.661256361071814 3.496535283187889E-5 50-51 3.496535283187889E-5 0.0 0.0 1.996976196287099 3.496535283187889E-5 52-53 3.496535283187889E-5 0.0 0.0 2.3299337686286656 3.496535283187889E-5 54-55 3.496535283187889E-5 0.0 0.0 2.7058462769241958 3.496535283187889E-5 56-57 3.496535283187889E-5 0.0 0.0 3.147878267424809 3.496535283187889E-5 58-59 3.496535283187889E-5 0.0 0.0 3.622270691971326 3.496535283187889E-5 60-61 3.496535283187889E-5 0.0 0.0 4.12164586111622 3.496535283187889E-5 62-63 3.496535283187889E-5 0.0 0.0 4.634325347013645 3.496535283187889E-5 64-65 3.496535283187889E-5 0.0 0.0 5.179767368514539 3.496535283187889E-5 66-67 3.496535283187889E-5 0.0 0.0 5.798601665609548 6.993070566375778E-5 68-69 3.496535283187889E-5 0.0 0.0 6.477156785341405 6.993070566375778E-5 70-71 3.496535283187889E-5 0.0 0.0 7.1911143248155405 6.993070566375778E-5 72-73 3.496535283187889E-5 0.0 0.0 7.9135334796749905 6.993070566375778E-5 74-75 3.496535283187889E-5 0.0 0.0 8.66006124531202 6.993070566375778E-5 76-77 3.496535283187889E-5 0.0 0.0 9.466799348525544 6.993070566375778E-5 78-79 3.496535283187889E-5 0.0 0.0 10.344394739252873 6.993070566375778E-5 80-81 3.496535283187889E-5 0.0 0.0 11.259175782716905 6.993070566375778E-5 82-83 3.496535283187889E-5 0.0 0.0 12.193554906443206 6.993070566375778E-5 84-85 3.496535283187889E-5 0.0 0.0 13.130503983602647 6.993070566375778E-5 86-87 3.496535283187889E-5 0.0 0.0 14.095495273733258 6.993070566375778E-5 88-89 3.496535283187889E-5 0.0 0.0 15.12957810105966 6.993070566375778E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4725 0.0 43.085403 1 GGTATCA 2845 0.0 41.295513 1 TCAACGC 6185 0.0 32.234035 4 TATCAAC 6315 0.0 32.01923 2 ATCAACG 6390 0.0 31.348494 3 CAACGCA 6345 0.0 31.266098 5 AACGCAG 6620 0.0 29.896112 6 GTACATG 10170 0.0 28.71677 1 TACATGG 10225 0.0 27.898817 2 ACATGGG 10855 0.0 25.800447 3 ACGCAGA 8300 0.0 23.444578 7 CGCAGAG 8610 0.0 22.542576 8 CATGGGG 7495 0.0 21.343386 4 GTATAGG 500 0.0 20.928633 1 GAGTACA 7610 0.0 20.3136 1 CTATACT 580 0.0 19.642118 4 GCAGAGT 9450 0.0 19.53445 9 AGTACAT 7730 0.0 18.605347 2 ATACCGT 530 0.0 17.909801 6 AGAGTAC 7885 0.0 17.060698 10-11 >>END_MODULE