##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920859_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4452935 Sequences flagged as poor quality 0 Sequence length 98 %GC 49 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.396909229530635 31.0 28.0 33.0 16.0 34.0 2 28.429280238763873 31.0 28.0 34.0 16.0 34.0 3 28.497359157499492 31.0 28.0 34.0 16.0 34.0 4 31.945866714874573 35.0 32.0 37.0 19.0 37.0 5 31.897305934176 35.0 32.0 37.0 20.0 37.0 6 32.02231561879974 35.0 32.0 37.0 22.0 37.0 7 31.855233009239974 35.0 32.0 37.0 19.0 37.0 8 31.791156170031677 35.0 32.0 37.0 18.0 37.0 9 33.029953951719484 37.0 32.0 39.0 18.0 39.0 10-11 32.83891051632238 37.0 32.0 39.0 17.0 39.0 12-13 32.658671864736405 37.0 32.0 39.0 17.0 39.0 14-15 33.40372832749636 38.0 32.0 40.0 17.0 41.0 16-17 33.28425981964705 38.0 32.0 40.0 16.0 41.0 18-19 33.158564182949 38.0 32.0 40.0 13.0 41.0 20-21 33.05462475872655 38.0 32.0 40.0 10.5 41.0 22-23 32.828899254087474 38.0 32.0 40.0 10.0 41.0 24-25 32.629325040675425 38.0 31.0 40.0 10.0 41.0 26-27 32.65061178750644 38.0 31.0 40.0 9.5 41.0 28-29 32.485505627187464 38.0 31.0 40.0 8.5 41.0 30-31 32.236675136735656 37.5 30.5 40.0 8.0 41.0 32-33 31.996612908115658 37.0 30.0 40.0 5.0 41.0 34-35 31.66452036690408 37.0 30.0 40.0 2.0 41.0 36-37 31.36035378913009 37.0 30.0 40.0 2.0 41.0 38-39 31.160420935854667 37.0 30.0 40.0 2.0 41.0 40-41 30.95118208552337 36.5 29.5 40.0 2.0 41.0 42-43 30.70731955440625 36.0 29.0 39.5 2.0 41.0 44-45 30.421210617267036 36.0 28.0 39.0 2.0 40.5 46-47 30.156795349584037 35.5 28.0 39.0 2.0 40.0 48-49 29.847275897806725 35.0 27.0 39.0 2.0 40.0 50-51 28.697304586750086 34.0 25.5 38.0 2.0 39.5 52-53 29.142864874515347 34.5 26.5 38.5 2.0 39.5 54-55 29.77555982739474 35.0 28.0 39.0 2.0 40.0 56-57 29.708741650170055 35.0 28.0 39.0 2.0 40.0 58-59 29.446983281813004 35.0 27.0 39.0 2.0 40.0 60-61 29.103342402258285 35.0 26.0 39.0 2.0 40.0 62-63 28.69723137660891 34.0 26.0 38.0 2.0 40.0 64-65 28.262876282721393 34.0 26.0 38.0 2.0 40.0 66-67 27.866277073435835 34.0 25.0 37.0 2.0 40.0 68-69 27.413845138094313 33.5 23.5 36.5 2.0 39.0 70-71 27.076384227481427 33.0 23.0 36.0 2.0 39.0 72-73 26.619669723452063 33.0 22.0 35.5 2.0 39.0 74-75 26.179260532659917 33.0 20.5 35.0 2.0 37.5 76-77 25.769495400224795 32.0 19.5 35.0 2.0 37.0 78-79 25.314705806395107 32.0 18.0 35.0 2.0 36.5 80-81 24.87316320584064 32.0 15.0 35.0 2.0 36.0 82-83 24.409973422023903 31.0 8.5 34.5 2.0 35.5 84-85 24.01554727387667 31.0 4.5 34.0 2.0 35.0 86-87 23.558561488097176 31.0 2.0 34.0 2.0 35.0 88-89 23.028976169649905 30.5 2.0 34.0 2.0 35.0 90-91 22.52950548346203 30.0 2.0 34.0 2.0 35.0 92-93 21.988498035565307 30.0 2.0 34.0 2.0 35.0 94-95 21.34775490771817 29.5 2.0 34.0 2.0 35.0 96-97 20.696670847429843 29.0 2.0 34.0 2.0 35.0 98 20.2953130912533 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 255540.0 3 42361.0 4 30992.0 5 25150.0 6 23626.0 7 23937.0 8 26912.0 9 31274.0 10 33608.0 11 35768.0 12 36769.0 13 36670.0 14 33644.0 15 35364.0 16 37480.0 17 40335.0 18 41223.0 19 41904.0 20 43082.0 21 45701.0 22 49707.0 23 55551.0 24 63285.0 25 72898.0 26 83736.0 27 96092.0 28 111559.0 29 129288.0 30 150326.0 31 176793.0 32 209918.0 33 254213.0 34 316517.0 35 400360.0 36 505890.0 37 536856.0 38 292705.0 39 25900.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.83911287658469 17.175709795469494 12.892617369454888 25.092559958490927 2 16.3227705117368 18.950428411007703 38.825698056218286 25.901103021037216 3 19.992816677706703 22.78438420307014 27.881128819340795 29.341670299882367 4 13.793734692520696 14.807442467237728 34.952377230197534 36.446445610044044 5 15.26237571274797 36.204159950258145 33.11941909131261 15.414045245681281 6 35.09667695431655 33.27419057759089 16.762018356042535 14.867114112050029 7 30.908179402812696 30.52117719647336 19.739111548051504 18.831531852662444 8 27.67241708460324 33.72035046031044 19.251554768968855 19.355677686117467 9 27.493911319163654 15.71543263038872 18.606379837118663 38.18427621332896 10-11 26.661595105250807 24.70884933195746 26.428142337581846 22.20141322520989 12-13 27.02275660129639 21.80177313199269 26.720332401611074 24.45513786509985 14-15 24.160062163552126 23.408922985018314 24.10861104436115 28.322403807068408 16-17 24.553314308731046 26.457043442952187 24.705021531533262 24.2846207167835 18-19 24.52050866121195 25.714408312175436 26.04248443724897 23.722598589363646 20-21 25.29142051748332 24.931857005740362 25.771194395681913 24.005528081094404 22-23 25.022117460660372 24.606800387149697 25.66493162667053 24.70615052551941 24-25 24.719066152756596 24.860798544158673 25.717889618849533 24.702245684235198 26-27 24.485242062537786 25.075503374559215 25.742695197405535 24.696559365497464 28-29 24.53518358457791 25.208793112610817 25.693268410055687 24.56275489275559 30-31 24.75359493557686 25.108903567399327 25.460077829509824 24.677423667513988 32-33 24.553968976139835 25.08419605250316 25.390825008442906 24.971009962914092 34-35 24.866134615904727 25.115316480801997 25.494070210866997 24.52447869242628 36-37 24.920351987928797 24.928605550933234 25.506433996730866 24.644608464407103 38-39 24.83684434867916 25.049246604537608 25.41638279217837 24.69752625460486 40-41 24.803457225134405 24.951262854411567 25.543365704376324 24.7019142160777 42-43 24.868304701729986 24.782055124602213 25.39784958123382 24.951790592433973 44-45 24.68123103586014 24.914569037983426 25.556178060882374 24.84802186527406 46-47 24.72123518213469 24.925792967312592 25.47854669356513 24.874425156987584 48-49 24.719078825038935 24.950303960810125 25.412156605697096 24.918460608453845 50-51 24.51445267701489 25.101257760012935 25.561449064198 24.822840498774173 52-53 24.6258526734222 24.920161030730263 25.617283149687246 24.83670314616029 54-55 24.4204878453864 24.85441678028544 25.742944917348265 24.982150456979895 56-57 24.405512657424012 24.86945766078866 25.718042082604587 25.00698759918274 58-59 24.392768733682566 24.741317574616133 25.712452281198367 25.15346141050293 60-61 24.399465221279755 24.693056618168647 25.95342759975695 24.954050560794645 62-63 24.218696522607065 24.75666323734735 25.993642734393298 25.030997505652287 64-65 24.22895893222962 24.634129582624926 25.925821874972847 25.211089610172603 66-67 24.211626931977136 24.814917845653994 25.75015531428784 25.223299908081025 68-69 24.290048584067172 24.645307662437222 25.77636441580527 25.28827933769034 70-71 24.163469533895018 24.57675192955305 25.87439777562531 25.38538076092662 72-73 24.225093783628505 24.63859727352582 25.78530438917864 25.35100455366703 74-75 24.124361938287624 24.786185793473 25.800007167523276 25.2894451007161 76-77 24.15451761815353 24.52779327630501 25.87692958542319 25.440759520118267 78-79 24.16758548628622 24.66344381106244 25.784418772589213 25.384551930062127 80-81 24.183301136857395 24.744059713557878 25.79417316485441 25.278465984730314 82-83 24.22084150976613 24.699294554791614 25.818352395302686 25.261511540139576 84-85 24.17211377594562 24.666354694837903 25.79763577649653 25.36389575271995 86-87 24.132386693446286 24.661138778349528 25.914813453771746 25.291661074432444 88-89 24.145269032385354 24.53341976944108 25.8428478818456 25.47846331632797 90-91 24.169403694765318 24.54313638566211 25.871021925643685 25.416437993928888 92-93 24.2605845717596 24.429437315306746 25.88971713615288 25.420260976780774 94-95 24.186872306786615 24.383748593479154 25.994263570312633 25.435115529421605 96-97 24.377184208752592 24.274346199806452 25.89013375027586 25.4583358411651 98 24.38935489368148 24.23255727981837 25.77977283731549 25.59831498918466 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 69.0 1 65.5 2 100.0 3 165.5 4 172.5 5 202.0 6 346.5 7 651.5 8 1017.0 9 1155.5 10 1192.5 11 1329.5 12 1529.0 13 1754.0 14 2019.5 15 2272.0 16 2467.0 17 2581.0 18 2607.0 19 2582.0 20 2547.5 21 2514.5 22 2566.0 23 2781.0 24 3082.5 25 3607.0 26 4411.5 27 5499.5 28 7109.0 29 9736.0 30 14199.0 31 20782.0 32 28318.5 33 35397.0 34 43162.0 35 53181.5 36 64217.5 37 75046.5 38 85920.5 39 96776.0 40 106706.5 41 116993.5 42 130809.0 43 144988.0 44 156852.5 45 170943.0 46 184727.5 47 196304.0 48 206401.0 49 211876.5 50 213337.0 51 213347.0 52 212655.5 53 212986.0 54 211162.5 55 202675.5 56 188500.0 57 170935.0 58 154800.5 59 138456.5 60 118771.0 61 98253.0 62 79614.5 63 61965.0 64 45777.5 65 33881.5 66 25471.0 67 19034.5 68 13888.0 69 10093.0 70 7553.5 71 5880.5 72 4608.5 73 3492.5 74 2634.5 75 1822.0 76 1174.5 77 701.5 78 386.5 79 233.0 80 148.0 81 95.0 82 60.0 83 40.0 84 29.0 85 22.0 86 17.0 87 14.5 88 12.0 89 7.0 90 5.0 91 6.0 92 6.0 93 5.5 94 4.0 95 2.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4096623912093933 2 0.028116287347558406 3 0.021468986185515845 4 0.01938047602311734 5 0.025848120396996587 6 0.022344813027811994 7 0.017157223269596344 8 0.011340834752809103 9 0.0 10-11 0.0 12-13 0.005591817531583102 14-15 0.003705421255868321 16-17 0.006276759036455731 18-19 0.03776161116207625 20-21 0.08200209524729195 22-23 0.10165205645265427 24-25 0.067360067011982 26-27 0.07781384637323473 28-29 0.05965728221947996 30-31 0.05475040619276948 32-33 0.021884442508143503 34-35 0.3596504328044312 36-37 0.551198254634303 38-39 0.503634119968066 40-41 0.5118534180265376 42-43 0.4592364361932074 44-45 0.4320296613357258 46-47 0.43172649050570017 48-49 0.4205877696395748 50-51 0.4173314903541147 52-53 0.4796499387482638 54-55 0.48168230616436125 56-57 0.4509834524869552 58-59 0.435892282281237 60-61 0.4507925671495317 62-63 0.42916638127437295 64-65 0.4793579964674984 66-67 0.503095149603576 68-69 0.4422139555147335 70-71 0.3977376718950535 72-73 0.3831068722090037 74-75 0.36506259354785103 76-77 0.3623115989791003 78-79 0.3611775155038194 80-81 0.37931162255905376 82-83 0.37410157570231767 84-85 0.3736187480841288 86-87 0.3588307487084361 88-89 0.40557519927867797 90-91 0.3820064743815034 92-93 0.3711035530498424 94-95 0.3795361935442579 96-97 0.37799788229560954 98 0.37375349067525127 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 4452935.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.81318828657635 #Duplication Level Percentage of deduplicated Percentage of total 1 72.47394297418474 34.65210281295292 2 11.700451979406974 11.188718270588613 3 5.405773261374348 7.754017643418947 4 2.983190780506274 5.705434499325005 5 1.8697189709323505 4.469861260008613 6 1.1947193169922452 3.427400379177607 7 0.8431247328370652 2.821873712014559 8 0.6277100823559988 2.401025628565577 9 0.4703258068585986 2.0238998723429504 >10 2.2924301184573266 18.85602518456874 >50 0.10101139593011914 3.289568130212084 >100 0.03641740615514873 2.9456447653992734 >500 9.465393249039484E-4 0.28437272852787887 >1k 2.3663468390251708E-4 0.18005511289712095 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 2.2457098520414065E-5 0.0 6 4.491419704082813E-5 0.0 0.0 2.2457098520414065E-5 0.0 7 8.982839408165626E-5 0.0 0.0 4.491419704082813E-5 0.0 8 8.982839408165626E-5 0.0 0.0 4.491419704082813E-5 0.0 9 8.982839408165626E-5 0.0 0.0 4.491419704082813E-5 0.0 10-11 8.982839408165626E-5 0.0 0.0 7.859984482144923E-5 0.0 12-13 1.1228549260207031E-4 0.0 0.0 8.982839408165626E-5 0.0 14-15 1.796567881633125E-4 0.0 0.0 8.982839408165626E-5 0.0 16-17 2.2457098520414063E-4 0.0 0.0 8.982839408165626E-5 0.0 18-19 3.8177067484703906E-4 0.0 0.0 8.982839408165626E-5 0.0 20-21 5.165132659695234E-4 0.0 0.0 1.0105694334186329E-4 0.0 22-23 5.614274630103516E-4 0.0 0.0 2.357995344643477E-4 0.0 24-25 6.737129556124219E-4 0.0 0.0 6.063416600511798E-4 0.0 26-27 6.737129556124219E-4 0.0 0.0 0.0012800546156636018 0.0 28-29 8.758268422961485E-4 0.0 0.0 0.0054570749404606175 0.0 30-31 9.881123348982187E-4 0.0 0.0 0.021019844215107567 2.2457098520414065E-5 32-33 0.0010105694334186328 0.0 0.0 0.054155293081978514 2.2457098520414065E-5 34-35 0.0011116263767604962 0.0 0.0 0.100282173442909 2.2457098520414065E-5 36-37 0.0012126833201023595 0.0 0.0 0.17900553230622052 2.2457098520414065E-5 38-39 0.0013025117141840156 0.0 0.0 0.3064271093110499 2.2457098520414065E-5 40-41 0.0013137402634442227 0.0 0.0 0.4576644392967784 2.2457098520414065E-5 42-43 0.001414797206786086 0.0 0.0 0.6178958372399328 2.2457098520414065E-5 44-45 0.0016393681919902267 0.0 0.0 0.8130255662838106 2.2457098520414065E-5 46-47 0.0019986817683168515 0.0 0.0 1.0466692192901985 2.2457098520414065E-5 48-49 0.002110967260918922 0.0 0.0 1.296133898204218 2.2457098520414065E-5 50-51 0.002110967260918922 0.0 0.0 1.5661243651658963 2.2457098520414065E-5 52-53 0.002110967260918922 0.0 0.0 1.8487244929467868 2.2457098520414065E-5 54-55 0.002110967260918922 0.0 0.0 2.1663576944195233 2.2457098520414065E-5 56-57 0.0022457098520414064 0.0 0.0 2.533789511861278 2.2457098520414065E-5 58-59 0.0022457098520414064 0.0 0.0 2.9346711775491894 2.2457098520414065E-5 60-61 0.0022457098520414064 0.0 0.0 3.3621757335330518 2.2457098520414065E-5 62-63 0.0022457098520414064 0.0 0.0 3.8009425244249018 2.2457098520414065E-5 64-65 0.0022457098520414064 0.0 0.0 4.2655237500659675 2.2457098520414065E-5 66-67 0.002380452443163891 0.0 0.0 4.791525140160366 2.2457098520414065E-5 68-69 0.002414138090944512 0.0 0.0 5.377801382683556 4.491419704082813E-5 70-71 0.00245905228798534 0.0 0.0 6.005623257469511 4.491419704082813E-5 72-73 0.0024927379357659613 0.0 0.0 6.641933915496184 6.737129556124219E-5 74-75 0.002515195034286375 0.0 0.0 7.297557678250412 6.737129556124219E-5 76-77 0.002515195034286375 0.0 0.0 8.008908730983048 6.737129556124219E-5 78-79 0.002515195034286375 0.0 0.0 8.787530022333584 6.737129556124219E-5 80-81 0.0028969657091334144 0.0 0.0 9.602105128415303 6.737129556124219E-5 82-83 0.003020479750995692 0.0 0.0 10.439406818199682 6.737129556124219E-5 84-85 0.0031103081450773477 0.0 0.0 11.279246160116866 6.737129556124219E-5 86 0.003166450891378383 0.0 0.0 11.931433986797472 6.737129556124219E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 7370 0.0 41.343285 1 GGTATCA 4180 0.0 41.07211 1 ATCAACG 9715 0.0 30.916475 3 TCAACGC 9685 0.0 30.870201 4 TATCAAC 9895 0.0 30.587158 2 CAACGCA 9900 0.0 30.199791 5 AACGCAG 10375 0.0 28.900023 6 GTACATG 16955 0.0 28.123957 1 TACATGG 17430 0.0 26.94099 2 ACATGGG 18420 0.0 25.193144 3 ACGCAGA 12550 0.0 23.742395 7 CGCAGAG 13150 0.0 22.517881 8 CATGGGG 13505 0.0 21.968538 4 GCAGAGT 14755 0.0 18.918604 9 AGTACAT 12070 0.0 18.806541 2 GAGTACA 12875 0.0 18.732618 1 AGAGTAC 12605 0.0 16.964432 10-11 ATGGGGG 7065 0.0 16.16139 5 GTATATA 1320 0.0 16.039778 1 CAGAGTA 13460 0.0 15.937908 10-11 >>END_MODULE