##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920858_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2466955 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.62718168754598 31.0 30.0 33.0 22.0 34.0 2 28.65104916790132 31.0 28.0 34.0 18.0 34.0 3 28.725118617891287 31.0 28.0 34.0 22.0 34.0 4 32.213588411624855 35.0 32.0 37.0 23.0 37.0 5 32.18703340758141 35.0 32.0 37.0 23.0 37.0 6 32.31916269246906 35.0 32.0 37.0 24.0 37.0 7 32.151200569122665 35.0 32.0 37.0 23.0 37.0 8 32.10280933377382 35.0 32.0 37.0 22.0 37.0 9 33.36097415639929 37.0 33.0 39.0 22.0 39.0 10-11 33.15831987206901 37.0 32.5 39.0 19.5 39.0 12-13 32.98930969555586 37.0 32.0 39.0 18.0 39.0 14-15 33.73335387147313 38.0 32.0 40.0 17.5 41.0 16-17 33.630520824255 38.0 32.0 40.0 17.0 41.0 18-19 33.53087206698136 38.0 32.0 40.0 17.5 41.0 20-21 33.45961255880225 38.0 32.0 40.0 18.0 41.0 22-23 33.2369751373657 38.0 32.0 40.0 16.5 41.0 24-25 33.028179881675996 38.0 32.0 40.0 15.0 41.0 26-27 33.07795663074519 38.0 32.0 40.0 13.0 41.0 28-29 32.92289218895358 38.0 32.0 40.0 10.0 41.0 30-31 32.669759278138436 38.0 31.0 40.0 9.5 41.0 32-33 32.42805563944215 37.0 31.0 40.0 9.0 41.0 34-35 32.08839358642537 37.0 30.5 40.0 7.5 41.0 36-37 31.777958252177278 37.0 30.0 40.0 4.0 41.0 38-39 31.58143399453983 37.0 30.0 40.0 2.0 41.0 40-41 31.377274615872604 37.0 30.0 40.0 2.0 41.0 42-43 31.13593154313719 36.5 30.0 40.0 2.0 41.0 44-45 30.846368904175392 36.0 29.0 39.5 2.0 41.0 46-47 30.572682720195544 36.0 28.5 39.0 2.0 40.0 48-49 30.270100994951264 35.5 28.0 39.0 2.0 40.0 50-51 29.113267976108197 34.0 26.0 38.0 2.0 39.5 52-53 29.564978485622966 34.5 27.5 38.5 2.0 39.5 54-55 30.219168570160377 36.0 28.0 39.0 2.0 40.0 56-57 30.17616981258272 35.5 28.0 39.0 2.0 41.0 58-59 29.940506616456318 35.0 28.0 39.0 2.0 41.0 60-61 29.632373918454128 35.0 28.0 39.0 2.0 40.0 62-63 29.251484522417314 35.0 27.0 39.0 2.0 40.0 64-65 28.839887432077198 34.0 26.0 38.0 2.0 40.0 66-67 28.473732800152412 34.0 26.0 38.0 2.0 40.0 68-69 28.034605617046115 34.0 25.5 37.0 2.0 40.0 70-71 27.711166802799404 34.0 25.0 37.0 2.0 39.0 72-73 27.24894556244439 33.5 24.0 36.0 2.0 39.0 74-75 26.804577505467265 33.0 23.0 36.0 2.0 39.0 76-77 26.38316730544335 33.0 22.0 35.0 2.0 37.5 78-79 25.91974215176199 32.0 20.0 35.0 2.0 37.0 80-81 25.469267578857334 32.0 18.5 35.0 2.0 36.5 82-83 24.995220828916622 32.0 17.0 35.0 2.0 36.0 84-85 24.585788350415797 32.0 10.0 35.0 2.0 36.0 86-87 24.132411616750204 31.0 4.5 34.0 2.0 35.0 88-89 23.60878897264036 31.0 2.0 34.0 2.0 35.0 90-91 23.112565287976473 31.0 2.0 34.0 2.0 35.0 92-93 22.576158057200068 30.5 2.0 34.0 2.0 35.0 94-95 21.948860234580685 30.0 2.0 34.0 2.0 35.0 96-97 21.316464021435333 29.5 2.0 34.0 2.0 35.0 98 20.930337602428907 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 124437.0 3 21222.0 4 15524.0 5 12535.0 6 11707.0 7 11876.0 8 13742.0 9 15902.0 10 17413.0 11 18479.0 12 19300.0 13 19467.0 14 18548.0 15 19727.0 16 21649.0 17 23639.0 18 23849.0 19 22692.0 20 23521.0 21 24769.0 22 27280.0 23 30634.0 24 34904.0 25 39934.0 26 45433.0 27 52940.0 28 60735.0 29 71015.0 30 81742.0 31 96211.0 32 114856.0 33 138822.0 34 172829.0 35 218760.0 36 274517.0 37 307541.0 38 196336.0 39 22468.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.062382223314565 18.305594562954145 12.953675487108704 23.678347726622587 2 16.04303204576159 20.16532135773216 38.94121997382364 24.850426622682605 3 19.28591758179829 25.134745918700794 28.64815401943001 26.931182480070902 4 13.105924450475381 15.74131546972055 36.46799303153688 34.68476704826719 5 14.251199111258876 37.59297926946453 33.408111384562986 14.747710234713612 6 33.07401846680811 34.70345702248364 17.686998428054824 14.535526082653421 7 29.652172326628406 31.7810585037268 20.800577314070612 17.76619185557418 8 27.170689269347896 33.613718253492074 20.186579144518568 19.02901333264146 9 27.76690292283402 15.644103763546557 19.53663524466397 37.052358068955456 10-11 25.9103744215534 25.611544124085107 27.032690542823694 21.4453909115378 12-13 26.62650280057937 23.066582725632408 27.252655351382813 23.054259122405405 14-15 23.78974942189016 24.327312018786518 25.16549781292165 26.71744074640167 16-17 23.76164534663471 27.62598601474008 25.637508176040203 22.974860462585 18-19 23.511615897318716 26.38693597038327 27.497015963051673 22.604432169246344 20-21 24.493534417184758 25.744500451323038 26.9373725899857 22.824592541506505 22-23 24.332822882481068 25.568880838535225 26.60179315135639 23.49650312762732 24-25 23.92643312444239 25.846730335171298 26.81376445222256 23.413072088163755 26-27 23.635127079288885 26.1367340410794 26.69913517160161 23.529003708030103 28-29 23.44424464261487 26.00334171770942 27.212022234043136 23.340391405632573 30-31 23.59254445671763 25.922579172004216 26.889573997055923 23.595302374222232 32-33 23.460618270469308 26.007810380946626 26.766812854531246 23.764758494052813 34-35 24.007230128028095 26.015892778047352 26.60045285916666 23.3764242347579 36-37 23.971938388321448 25.779991178540833 26.488295268295616 23.759775164842107 38-39 23.821263902730472 25.799790092137087 26.84073597264437 23.53821003248807 40-41 23.78013960812298 25.596499288436835 26.988711113500642 23.63464998993955 42-43 23.90943133838044 25.585589913330146 26.58292726665406 23.92205148163535 44-45 23.61919006919007 25.87657712657713 26.531481481481485 23.972751322751325 46-47 23.64618922022526 25.73999205954002 26.465052513464897 24.14876620676982 48-49 23.945324756345755 25.72848031130444 26.3387299661047 23.9874649662451 50-51 23.508715100531305 25.919509030888634 26.488599072820087 24.083176795759975 52-53 23.639629632419602 25.789364279956978 26.447843943801104 24.12316214382232 54-55 23.289918560909523 25.67746976700248 26.75537062105323 24.27724105103477 56-57 23.427742176440837 25.794710377442016 26.57992084596511 24.197626600152038 58-59 23.40245191472146 25.325802004691205 26.790145616269363 24.48160046431797 60-61 23.419124478879493 25.39927554505597 26.881422352917472 24.30017762314706 62-63 23.29239761202753 25.40955901221112 26.94374809605043 24.35429527971092 64-65 22.982131641337975 25.199465364212998 26.924592126439535 24.8938108680095 66-67 23.19833377182872 25.574211746843446 26.612651637271185 24.614802844056648 68-69 23.17140058486852 25.144400735674964 26.80087015931144 24.883328520145078 70-71 22.923491865095833 25.08947011234419 27.036126558505075 24.950911464054904 72-73 23.167665250424303 25.18707173042469 26.709722115999522 24.93554090315148 74-75 23.13038477088565 25.03123787396982 26.743687549673506 25.09468980547102 76-77 22.980781999884893 25.067228122922476 27.00155555596229 24.95043432123034 78-79 23.15771470314048 24.938298318883398 26.74444522175999 25.15954175621613 80-81 22.849792014267226 25.164758342565957 26.874978515971808 25.110471127195005 82-83 23.107844335649858 25.054309723967688 26.530175582966404 25.30767035741605 84-85 23.057236567262233 24.786858291831766 26.60597126273369 25.54993387817231 86-87 22.966004805034913 24.685897381146155 26.95382993495266 25.394267878866266 88-89 23.127198257832347 24.401109525119345 26.98636652902718 25.48532568802113 90-91 23.03139155745491 24.586710710718855 26.928476554475022 25.453421177351217 92-93 23.287559231151285 24.405634286360474 26.813950830161527 25.492855652326718 94-95 23.14492462376973 24.10452843175622 26.99725246338584 25.75329448108821 96-97 23.30814986091596 23.976721424311677 26.99619563050753 25.718933084264833 98 23.097424724580296 23.916799107039346 27.056480005402022 25.92929616297834 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 95.0 1 79.0 2 124.0 3 203.5 4 196.5 5 213.0 6 366.5 7 686.0 8 1069.5 9 1206.0 10 1164.5 11 1169.0 12 1236.0 13 1354.0 14 1528.0 15 1667.5 16 1719.5 17 1783.5 18 1821.5 19 1848.5 20 1872.5 21 1951.0 22 2148.0 23 2500.0 24 2912.5 25 3518.0 26 4510.0 27 5847.0 28 7908.5 29 10759.0 30 14833.5 31 20207.0 32 26533.0 33 32754.5 34 39321.5 35 47521.0 36 56270.0 37 62587.0 38 65865.5 39 68665.0 40 72216.5 41 76822.0 42 80938.0 43 85345.0 44 88548.5 45 89837.0 46 92746.5 47 100001.5 48 106161.0 49 107687.5 50 108307.0 51 106888.5 52 104876.5 53 103163.0 54 99305.5 55 93775.5 56 86597.5 57 77997.5 58 70449.5 59 62292.5 60 53616.0 61 44687.0 62 36609.5 63 29290.0 64 22347.0 65 17455.5 66 13528.0 67 10600.0 68 7748.0 69 5700.0 70 4759.5 71 4383.5 72 3855.5 73 2885.5 74 2124.0 75 1418.0 76 899.0 77 523.0 78 307.0 79 195.5 80 129.5 81 93.0 82 67.5 83 37.0 84 22.0 85 16.0 86 9.5 87 7.0 88 4.5 89 2.5 90 4.0 91 4.0 92 1.5 93 1.0 94 2.5 95 2.5 96 1.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.3828201162972166 2 0.02460523195599433 3 0.018687004829840835 4 0.01678182212484622 5 0.022092012217490794 6 0.023672908504613985 7 0.014592888804214102 8 0.00920162710710167 9 0.0 10-11 1.2160740670178418E-4 12-13 0.00583715552168564 14-15 0.0032225962775972805 16-17 0.005816887620568676 18-19 0.03715106274739507 20-21 0.08026088842317756 22-23 0.10000182411110052 24-25 0.06621523294912149 26-27 0.07699775634334635 28-29 0.05904039595371621 30-31 0.053770741663305574 32-33 0.02002468630356046 34-35 0.33863609186223503 36-37 0.5153113858988104 38-39 0.4698910194956941 40-41 0.47820085895364933 42-43 0.42824048270033294 44-45 0.4035339112387538 46-47 0.40205435445721543 48-49 0.3924676372288915 50-51 0.3895895952702826 52-53 0.4487515986307006 54-55 0.4487515986307006 56-57 0.4196468926267402 58-59 0.40608766677949126 60-61 0.4195252852200385 62-63 0.4009598877968994 64-65 0.4490353492463381 66-67 0.46976941208899226 68-69 0.41198562600452787 70-71 0.3709431262426757 72-73 0.35699881027420444 74-75 0.34054127456722966 76-77 0.33841314494994845 78-79 0.3385144844555332 80-81 0.3540194288100107 82-83 0.3486687029151322 84-85 0.34917540044305634 86-87 0.3357985857058601 88-89 0.378077427435847 90-91 0.35712041768090624 92-93 0.34771611156263493 94-95 0.35480987695357236 96-97 0.353837017699958 98 0.34925647204752414 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2466955.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.0865311025341 #Duplication Level Percentage of deduplicated Percentage of total 1 72.69336732031478 29.867182973540483 2 10.677706610920035 8.774198495465999 3 5.01759645824189 6.184668988245611 4 2.9741746182264843 4.887940718245198 5 1.9030643502659348 3.9095156308662595 6 1.2953077665530244 3.193182170270089 7 0.9465317900317343 2.7222795481473288 8 0.7031564092827781 2.311220614395445 9 0.5707221287835423 2.1104093245652535 >10 2.911436946285001 21.20108079414851 >50 0.18907344932367706 5.34798115085166 >100 0.11346727540945492 8.119072892243636 >500 0.0037955750396559194 0.9625624117252481 >1k 5.993013220508392E-4 0.40870428728929764 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3083 0.12497187828720022 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 4.053580223392806E-5 0.0 0.0 0.0 0.0 6 4.053580223392806E-5 0.0 0.0 0.0 0.0 7 2.0267901116964032E-4 0.0 0.0 4.053580223392806E-5 0.0 8 2.0267901116964032E-4 0.0 0.0 4.053580223392806E-5 0.0 9 2.0267901116964032E-4 0.0 0.0 4.053580223392806E-5 0.0 10-11 2.0267901116964032E-4 0.0 0.0 4.053580223392806E-5 0.0 12-13 2.837506156374964E-4 0.0 0.0 4.053580223392806E-5 0.0 14-15 3.242864178714245E-4 0.0 0.0 8.107160446785612E-5 0.0 16-17 3.445543189883885E-4 0.0 0.0 8.107160446785612E-5 0.0 18-19 4.458938245732087E-4 0.0 0.0 1.0133950558482014E-4 0.0 20-21 5.269654290410648E-4 0.0 0.0 2.634827145205324E-4 0.0 22-23 5.269654290410648E-4 0.0 0.0 6.28304934625885E-4 0.0 24-25 7.296444402107051E-4 0.0 0.0 0.0014592888804214102 0.0 26-27 7.499123413276692E-4 0.0 0.0 0.002756434551907108 0.0 28-29 8.309839457955252E-4 0.0 0.0 0.008553054271358822 0.0 30-31 8.917876491464174E-4 0.0 0.0 0.032185426973738884 0.0 32-33 8.917876491464174E-4 0.0 0.0 0.0810310686656222 0.0 34-35 9.728592536142734E-4 0.0 0.0 0.15063104110127667 0.0 36-37 0.0010539308580821297 0.0 0.0 0.2639894120484565 0.0 38-39 0.0010944666603160576 0.0 0.0 0.44408998137379885 0.0 40-41 0.0010944666603160576 0.0 0.0 0.6622334010956827 0.0 42-43 0.0012363419681348058 0.0 0.0 0.8788769961349112 0.0 44-45 0.001378217275953554 0.0 0.0 1.1440824822503854 0.0 46-47 0.0016416999904740864 0.0 0.0 1.4682270248139915 0.0 48-49 0.0017430394960589067 0.0 0.0 1.8207466289413468 0.0 50-51 0.0017430394960589067 0.0 0.0 2.203343798326277 0.0 52-53 0.0017835752982928348 0.0 0.0 2.590278298550237 0.0 54-55 0.0018241111005267627 0.0 0.0 3.0156002034897273 0.0 56-57 0.001986254309462475 0.0 0.0 3.5107044919749244 0.0 58-59 0.001986254309462475 0.0 0.0 4.044642079000225 0.0 60-61 0.002026790111696403 0.0 0.0 4.624526997857682 0.0 62-63 0.002026790111696403 0.0 0.0 5.199385477238133 0.0 64-65 0.002026790111696403 0.0 0.0 5.8023960712700475 0.0 66-67 0.002188933320632115 0.0 0.0 6.487653808034601 0.0 68-69 0.0022294691228660433 0.0 0.0 7.232641049390848 0.0 70-71 0.0022902728262169355 0.0 0.0 8.058598555709366 0.0 72-73 0.0023510765295678276 0.0 0.0 8.882002306487147 0.0 74-75 0.0023713444306847917 0.0 0.0 9.704007572087857 0.0 76-77 0.0023916123318017558 0.0 0.0 10.596139775553263 0.0 78-79 0.0023916123318017558 0.0 0.0 11.55943257984033 0.0 80-81 0.002594291342971396 0.0 0.0 12.59200107014518 0.0 82-83 0.002634827145205324 0.0 0.0 13.637399141857067 0.0 84-85 0.00271589874967318 0.0 0.0 14.657746087788386 0.0 86 0.002796970354141036 0.0 0.0 15.427480436408446 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 8305 0.0 35.245144 1 GGTATCA 5170 0.0 31.157267 1 TCAACGC 10470 0.0 27.90282 4 ATCAACG 10470 0.0 27.771975 3 AACGCAG 10765 0.0 27.388245 6 CAACGCA 10735 0.0 27.256744 5 TATCAAC 10630 0.0 27.181929 2 GTACATG 14195 0.0 25.06259 1 TACATGG 14730 0.0 24.0374 2 GTATAGT 350 0.0 23.669348 1 ACATGGG 14880 0.0 23.178165 3 ACGCAGA 12610 0.0 22.975426 7 CGCAGAG 12850 0.0 22.33091 8 CATGGGG 7970 0.0 21.406218 4 GCAGAGT 13195 0.0 20.704008 9 GTGTACG 185 8.614961E-6 19.902155 1 GAGTACT 3790 0.0 18.33001 12-13 CATGGGA 6790 0.0 18.101742 4 GTATTGG 765 0.0 17.446905 1 GCCGTAT 375 2.7102942E-10 17.177998 92 >>END_MODULE