##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920857_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3304328 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.79101015395566 31.0 30.0 33.0 23.0 34.0 2 28.816235857941464 31.0 29.0 34.0 22.0 34.0 3 28.89692367101571 31.0 29.0 34.0 22.0 34.0 4 32.38761950992759 35.0 33.0 37.0 25.0 37.0 5 32.355535830583406 35.0 33.0 37.0 25.0 37.0 6 32.48553382109766 35.0 33.0 37.0 25.0 37.0 7 32.3214196653601 35.0 33.0 37.0 23.0 37.0 8 32.26393687309492 35.0 32.0 37.0 23.0 37.0 9 33.549278703566955 37.0 33.0 39.0 23.0 39.0 10-11 33.36631215182028 37.0 33.0 39.0 22.0 39.0 12-13 33.19609357787726 37.0 33.0 39.0 20.0 39.0 14-15 33.98699281669374 38.0 33.0 40.0 19.0 41.0 16-17 33.88070009999008 38.0 33.0 40.0 18.0 41.0 18-19 33.76600749078179 38.0 33.0 40.0 18.0 41.0 20-21 33.66534178810336 38.0 32.0 40.0 18.0 41.0 22-23 33.4500203974908 38.0 32.0 40.0 17.5 41.0 24-25 33.2551508203786 38.0 32.0 40.0 16.0 41.0 26-27 33.29045648615997 38.0 32.0 40.0 16.0 41.0 28-29 33.13951747526275 38.0 32.0 40.0 14.0 41.0 30-31 32.8955241428817 38.0 31.5 40.0 10.0 41.0 32-33 32.65745031970192 38.0 31.0 40.0 9.0 41.0 34-35 32.33447723712658 37.5 30.5 40.0 8.5 41.0 36-37 32.0357876094625 37.0 30.0 40.0 8.0 41.0 38-39 31.831545930065055 37.0 30.0 40.0 4.5 41.0 40-41 31.634745400577664 37.0 30.0 40.0 2.0 41.0 42-43 31.39401914700962 37.0 30.0 40.0 2.0 41.0 44-45 31.11650735035989 36.0 29.5 40.0 2.0 41.0 46-47 30.866198815613945 36.0 29.0 39.0 2.0 41.0 48-49 30.560254762844366 36.0 28.0 39.0 2.0 40.0 50-51 29.394540433032073 34.5 27.0 38.0 2.0 39.5 52-53 29.827623347319033 34.5 28.0 38.5 2.0 39.5 54-55 30.481496540295034 36.0 28.5 39.0 2.0 40.0 56-57 30.424505073346232 36.0 28.0 39.0 2.0 41.0 58-59 30.180823907311865 35.0 28.0 39.0 2.0 41.0 60-61 29.85389328783341 35.0 28.0 39.0 2.0 40.0 62-63 29.457676417111134 35.0 27.5 38.5 2.0 40.0 64-65 29.037960668553485 34.0 26.5 38.0 2.0 40.0 66-67 28.648362087540946 34.0 26.0 37.5 2.0 40.0 68-69 28.197454520253437 34.0 26.0 37.0 2.0 39.5 70-71 27.869179905868908 34.0 26.0 36.5 2.0 39.0 72-73 27.409704333226 33.5 25.0 36.0 2.0 39.0 74-75 26.97199854251757 33.0 24.0 35.5 2.0 38.5 76-77 26.556930335003063 33.0 23.0 35.0 2.0 37.5 78-79 26.107361163903825 32.5 21.5 35.0 2.0 37.0 80-81 25.65985186700594 32.0 20.0 35.0 2.0 36.0 82-83 25.192675938950373 32.0 18.5 35.0 2.0 36.0 84-85 24.799575435610507 32.0 16.5 35.0 2.0 35.5 86-87 24.34108448071741 31.5 8.5 34.0 2.0 35.0 88-89 23.80399585029089 31.0 3.5 34.0 2.0 35.0 90-91 23.30499847472769 31.0 2.0 34.0 2.0 35.0 92-93 22.768716816248265 31.0 2.0 34.0 2.0 35.0 94-95 22.135446602153298 30.0 2.0 34.0 2.0 35.0 96-97 21.49379722594125 30.0 2.0 34.0 2.0 35.0 98 21.09638964412734 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 157249.0 3 27509.0 4 20516.0 5 16772.0 6 15622.0 7 15919.0 8 18020.0 9 20704.0 10 22475.0 11 24416.0 12 25901.0 13 25538.0 14 24210.0 15 24960.0 16 26913.0 17 28922.0 18 29639.0 19 29276.0 20 30516.0 21 32587.0 22 35730.0 23 39830.0 24 45574.0 25 51775.0 26 60275.0 27 69583.0 28 81141.0 29 94415.0 30 110353.0 31 129010.0 32 154037.0 33 188289.0 34 234236.0 35 300026.0 36 382858.0 37 424793.0 38 257384.0 39 27352.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.9787837215768 17.33223339881286 12.602727655301182 25.086255224309163 2 16.281139490265005 19.04610403330829 38.86594648854135 25.806809987885366 3 20.051009875671753 22.620966838737722 28.401591682472304 28.926431603118225 4 13.565993423858444 14.732391356396542 35.50704787664725 36.19456734309776 5 14.763299495335975 36.487856824588086 33.71910627972529 15.029737400350648 6 34.89168572984502 33.90860390332766 16.621002824589397 14.578707542237918 7 30.35208639360632 30.971047257324454 19.92845733789016 18.74840901117907 8 27.45499995308633 34.127637267130375 19.320290525769074 19.097072254014222 9 26.96863023283403 15.813926462506142 18.89806338838033 38.3193799162795 10-11 26.326329083047774 24.871206754053095 26.949163929598978 21.853300233300153 12-13 26.738767515243083 22.103436253261837 26.94849040077818 24.209305830716904 14-15 23.62836609670486 23.837978232539335 24.35420032334624 28.179455347409565 16-17 24.032697110606147 26.90459746180787 25.175404136214453 23.887301291371525 18-19 24.01862663814522 26.01062696875261 26.622931830543127 23.347814562559048 20-21 24.568278131473406 25.37574712500935 26.45410903989079 23.601865703626455 22-23 24.323889956206727 25.181078386033658 26.309393990849934 24.185637666909685 24-25 24.081361013946303 25.437302200215022 26.30757582640561 24.173760959433064 26-27 23.864782321551104 25.6423618131014 26.328387737612196 24.1644681277353 28-29 24.001599530255334 25.72565209550728 26.24998126260232 24.02276711163507 30-31 24.090813706630055 25.594675558702058 26.065949598946958 24.248561135720927 32-33 23.791892904304788 25.65450438349219 26.01798802059882 24.535614691604202 34-35 24.28809972435124 25.667816519244997 26.041138967550225 24.002944788853537 36-37 24.422904151189123 25.32515201146562 26.04771710843117 24.20422672891409 38-39 24.11801498111963 25.54001542303787 26.09776612305857 24.244203472783934 40-41 24.320149797605332 25.404226623628652 26.195722397491693 24.079901181274327 42-43 24.259694043047748 25.305821669919016 26.018577152121487 24.41590713491175 44-45 24.150023538908492 25.39700823360323 26.142700795703245 24.310267431785032 46-47 24.24056160155581 25.440363873363392 25.99027071530286 24.32880380977794 48-49 24.05555493089745 25.53234292271315 25.905030830929327 24.507071315460074 50-51 23.963800772975837 25.752992026075212 26.003023287579865 24.28018391336909 52-53 24.24708803394153 25.396290860760335 26.059042218471685 24.29757888682645 54-55 23.82176569197709 25.344173983958868 26.407323809526705 24.426736514537332 56-57 23.78962631289769 25.564550755498 26.243575626174586 24.40224730542972 58-59 23.805901934309315 25.262473244346644 26.21507708135618 24.716547739987856 60-61 23.66362765191844 25.319256136735145 26.509251934246635 24.50786427709978 62-63 23.6835459156926 25.327504679506603 26.456132683728566 24.53281672107223 64-65 23.50979845429836 25.28945037496203 26.36483411696845 24.835917053771166 66-67 23.56829593943984 25.31282219728282 26.333497568408472 24.78538429486887 68-69 23.801191836206183 25.122163135145335 26.31778357554205 24.758861453106423 70-71 23.587286478367147 25.06800593843334 26.361269480642292 24.983438102557223 72-73 23.678971257695306 25.123103626977635 26.289512391166063 24.908412724160996 74-75 23.69262753149563 25.287712754971874 26.210774725741988 24.80888498779051 76-77 23.65386948695922 25.05696462703564 26.424996435202612 24.86416945080253 78-79 23.66512957420661 25.137998933090692 26.33580431310159 24.861067179601108 80-81 23.75732118819412 25.18813762094778 26.287369517946374 24.767171672911722 82-83 23.79628839324795 25.169376951005297 26.287788791308458 24.746545864438296 84-85 23.653367899648337 25.23334920407111 26.273543176380088 24.83973971990046 86-87 23.760361450393503 25.1811412643718 26.211440098106927 24.84705718712778 88-89 23.68355367093365 25.049377893986673 26.144282654393937 25.122785780685735 90-91 23.62187024458451 25.06191960104138 26.308422265630877 25.007787888743234 92-93 23.951693038390403 24.917455636533564 26.277620905984094 24.853230419091947 94-95 23.749558406795508 24.844177971402075 26.378856745190017 25.027406876612403 96-97 24.050274357422836 24.569478769498453 26.33364985285791 25.046597020220794 98 24.034189539932598 24.564194232793223 26.202625268244823 25.198990959029356 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 70.0 1 54.0 2 84.5 3 156.0 4 174.5 5 185.5 6 291.5 7 510.5 8 815.0 9 1013.5 10 1024.5 11 1041.5 12 1155.5 13 1349.0 14 1526.5 15 1684.0 16 1839.5 17 1983.0 18 2028.0 19 1979.5 20 1951.5 21 2030.5 22 2225.0 23 2559.5 24 3130.5 25 3914.0 26 5117.0 27 6892.5 28 9362.0 29 12937.5 30 18115.0 31 25285.0 32 31218.0 33 36225.5 34 42319.0 35 49311.0 36 57904.0 37 66212.5 38 73481.0 39 80920.5 40 88587.0 41 96363.0 42 105165.5 43 113660.5 44 121856.0 45 129649.5 46 136425.5 47 142504.0 48 146069.5 49 147374.0 50 147790.0 51 147226.0 52 146751.0 53 146882.5 54 143762.0 55 138201.5 56 129048.0 57 117308.5 58 106673.5 59 93116.5 60 77889.0 61 64469.5 62 52638.5 63 40800.5 64 30018.0 65 22342.5 66 17067.5 67 13253.5 68 10106.5 69 7586.5 70 5757.0 71 4246.0 72 3188.5 73 2438.5 74 1959.5 75 1457.0 76 953.0 77 618.0 78 362.5 79 183.0 80 103.5 81 66.5 82 38.5 83 26.0 84 14.0 85 9.5 86 9.5 87 9.5 88 9.5 89 7.5 90 9.5 91 7.5 92 3.5 93 2.5 94 3.5 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.4001721378749325 2 0.02681331877464949 3 0.01979222401650199 4 0.01715931348219668 5 0.022515924569231627 6 0.025390941819335128 7 0.017098786803247137 8 0.011711912376737419 9 0.0 10-11 3.026333947477369E-5 12-13 0.00623424793180338 14-15 0.00393423413172058 16-17 0.00738425483184478 18-19 0.039841686418539565 20-21 0.0859176207688825 22-23 0.10527102636300029 24-25 0.07196622127101183 26-27 0.08181693827005067 28-29 0.06381025128256032 30-31 0.057409554983645694 32-33 0.02241000288106992 34-35 0.3550494987180449 36-37 0.5441499754261683 38-39 0.49600100232180344 40-41 0.5051556625129225 42-43 0.45125665490835054 44-45 0.42462491617054965 46-47 0.42224924402177993 48-49 0.41276168709643835 50-51 0.4097504848186984 52-53 0.472516650889379 54-55 0.4738331061565316 56-57 0.442162521396181 58-59 0.4277874351456635 60-61 0.442162521396181 62-63 0.4211748954704254 64-65 0.47195677910909567 66-67 0.495047707128348 68-69 0.43465721320643713 70-71 0.39001878748114593 72-73 0.3748417227345469 74-75 0.35734951251812774 76-77 0.3545198902772364 78-79 0.3522501398166284 80-81 0.37092262027256373 82-83 0.3666403577368833 84-85 0.36635285601187295 86-87 0.3508731578705262 88-89 0.3973122522945664 90-91 0.37397921755951585 92-93 0.3633870487433451 94-95 0.3713614386949479 96-97 0.37139170203442273 98 0.3659745642684383 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3304328.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.80715804884489 #Duplication Level Percentage of deduplicated Percentage of total 1 73.22211969599918 37.93429927762069 2 12.58431626873425 13.039153237419306 3 5.2949792459207465 8.22953479976309 4 2.79878542724557 5.799884758964605 5 1.6417377177047547 4.252688270794007 6 1.057541588145363 3.2872934520163946 7 0.7080669230566071 2.567805449436706 8 0.506605615650967 2.0996637758769614 9 0.38497397249408766 1.794996669392358 >10 1.694236697171192 14.889145697083286 >50 0.07880796416947544 2.7622503158308165 >100 0.025770987688071068 2.258169606464997 >500 0.0011171435546462327 0.3876171135708971 >1k 9.4075246509575E-4 0.6974975757659959 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5131669737386845E-4 2 0.0 0.0 0.0 0.0 1.5131669737386845E-4 3 0.0 0.0 0.0 0.0 1.5131669737386845E-4 4 0.0 0.0 0.0 0.0 1.5131669737386845E-4 5 0.0 0.0 0.0 0.0 1.5131669737386845E-4 6 0.0 0.0 0.0 0.0 1.5131669737386845E-4 7 0.0 0.0 0.0 0.0 2.1184337632341584E-4 8 0.0 0.0 0.0 0.0 2.4210671579818954E-4 9 0.0 0.0 0.0 0.0 3.328967342225106E-4 10-11 0.0 0.0 0.0 3.0263339474773692E-5 3.4802840395989744E-4 12-13 0.0 0.0 0.0 3.0263339474773692E-5 3.93423413172058E-4 14-15 0.0 0.0 0.0 6.0526678949547384E-5 4.0855508290944483E-4 16-17 0.0 0.0 0.0 6.0526678949547384E-5 4.8421343159637907E-4 18-19 0.0 0.0 0.0 6.0526678949547384E-5 4.993451013337659E-4 20-21 0.0 0.0 0.0 1.0592168816170792E-4 5.144767710711527E-4 22-23 0.0 0.0 0.0 2.421067157981895E-4 5.598717802833132E-4 24-25 0.0 0.0 0.0 7.111884776571818E-4 6.657934684450212E-4 26-27 0.0 0.0 0.0 0.0015282986434760715 6.960568079197949E-4 28-29 0.0 3.0263339474773692E-5 0.0 0.006960568079197949 6.960568079197949E-4 30-31 0.0 3.0263339474773692E-5 0.0 0.02796332567469089 6.960568079197949E-4 32-33 0.0 3.0263339474773692E-5 0.0 0.07063463433412179 7.263201473945686E-4 34-35 0.0 3.0263339474773692E-5 0.0 0.12553233214136128 8.322418355562766E-4 36-37 0.0 4.5395009212160536E-5 0.0 0.21927302616447278 8.776368447684371E-4 38-39 0.0 6.0526678949547384E-5 0.0 0.3735101357976569 9.381635237179844E-4 40-41 0.0 6.0526678949547384E-5 0.0 0.549536849852678 9.684268631927581E-4 42-43 0.0 6.0526678949547384E-5 0.0 0.7327813703724327 9.684268631927581E-4 44-45 0.0 6.0526678949547384E-5 0.0 0.9570327158805059 9.684268631927581E-4 46-47 0.0 6.0526678949547384E-5 0.0 1.225453405352011 9.83558532930145E-4 48-49 0.0 6.0526678949547384E-5 0.0 1.5184781898165074 9.986902026675318E-4 50-51 6.0526678949547384E-5 6.0526678949547384E-5 0.0 1.8385281364319765 9.986902026675318E-4 52-53 6.0526678949547384E-5 6.0526678949547384E-5 0.0 2.156520175963161 0.0010138218724049185 54-55 6.0526678949547384E-5 6.0526678949547384E-5 0.0 2.511645333029893 0.0010592168816170792 56-57 6.0526678949547384E-5 6.0526678949547384E-5 0.0 2.9297636312133664 0.0010592168816170792 58-59 6.0526678949547384E-5 6.0526678949547384E-5 0.0 3.3782511905597747 0.0010743485513544661 60-61 6.0526678949547384E-5 6.0526678949547384E-5 0.0 3.856911299362533 0.0010894802210918528 62-63 6.0526678949547384E-5 6.0526678949547384E-5 0.0 4.341972104464206 0.0011500069000414002 64-65 6.0526678949547384E-5 6.0526678949547384E-5 0.0 4.858325202582794 0.0011500069000414002 66-67 6.0526678949547384E-5 6.0526678949547384E-5 0.0 5.449776777608034 0.0011500069000414002 68-69 6.0526678949547384E-5 6.0526678949547384E-5 0.0 6.095535915320754 0.0011500069000414002 70-71 6.0526678949547384E-5 6.0526678949547384E-5 0.0 6.779169622386155 0.0011651385697787871 72-73 6.0526678949547384E-5 6.0526678949547384E-5 0.0 7.483125161908866 0.0012256652487283345 74-75 6.0526678949547384E-5 6.0526678949547384E-5 0.0 8.195660358172676 0.001271060257940495 76-77 6.0526678949547384E-5 6.0526678949547384E-5 0.0 8.979057163816666 0.001271060257940495 78-79 6.0526678949547384E-5 6.0526678949547384E-5 0.0 9.829729373113082 0.001271060257940495 80-81 6.0526678949547384E-5 6.0526678949547384E-5 0.0 10.713070857372513 0.001271060257940495 82-83 6.0526678949547384E-5 6.0526678949547384E-5 0.0 11.617097334162953 0.001271060257940495 84-85 6.0526678949547384E-5 6.0526678949547384E-5 0.0 12.524452778295617 0.001271060257940495 86 6.0526678949547384E-5 6.0526678949547384E-5 0.0 13.217150355533713 0.001271060257940495 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4930 0.0 42.01234 1 GGTATCA 2610 0.0 41.794495 1 TCAACGC 6160 0.0 33.43043 4 CAACGCA 6365 0.0 32.353725 5 ATCAACG 6440 0.0 32.048153 3 TATCAAC 6660 0.0 30.922043 2 AACGCAG 6735 0.0 30.70786 6 GTACATG 10370 0.0 26.40885 1 ACGCAGA 7875 0.0 25.55756 7 TACATGG 10415 0.0 25.322388 2 ACATGGG 10730 0.0 23.893976 3 CGCAGAG 8430 0.0 23.547922 8 GAGTACA 7540 0.0 21.54838 1 GCAGAGT 9265 0.0 20.633974 9 CATGGGG 7700 0.0 19.715763 4 AGTACAT 7790 0.0 19.606627 2 AGAGTAC 7850 0.0 17.870935 10-11 GTCTTAG 1165 0.0 16.988451 1 TAAGGTG 1525 0.0 16.842033 5 CAGAGTA 8580 0.0 16.537464 10-11 >>END_MODULE