##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920857_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3304328 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.272285620555827 31.0 30.0 34.0 27.0 34.0 2 30.289755435901036 31.0 30.0 34.0 26.0 34.0 3 30.429188627763345 31.0 30.0 34.0 27.0 34.0 4 34.07243590829966 35.0 35.0 37.0 30.0 37.0 5 33.59159108902022 35.0 35.0 37.0 28.0 37.0 6 33.53761642306696 35.0 35.0 37.0 28.0 37.0 7 33.34703879275907 35.0 35.0 37.0 27.0 37.0 8 33.27752087565157 35.0 33.0 37.0 27.0 37.0 9 34.619652467914804 38.0 35.0 39.0 27.0 39.0 10-11 34.42817193087369 38.0 34.0 39.0 27.0 39.0 12-13 34.24317380114807 37.0 34.0 39.0 26.5 39.0 14-15 35.15338625584385 38.0 34.0 40.0 26.0 41.0 16-17 35.02432975782065 38.0 34.0 40.0 25.5 41.0 18-19 34.92621858362729 38.5 34.0 40.0 25.0 41.0 20-21 34.80588352609063 38.0 34.0 40.0 25.0 41.0 22-23 34.653487184081 38.0 34.0 40.0 24.5 41.0 24-25 34.46646882512874 38.0 33.0 40.0 24.0 41.0 26-27 34.27440511353595 38.0 33.0 40.0 23.0 41.0 28-29 34.216016993470376 38.0 33.0 40.0 23.0 41.0 30-31 34.20896684590634 38.0 33.0 40.0 23.0 41.0 32-33 34.0605238039323 38.0 33.0 40.0 22.0 41.0 34-35 33.89068806123363 38.0 33.0 40.0 21.0 41.0 36-37 33.6896606511218 38.0 33.0 40.0 19.0 41.0 38-39 33.49790396110798 38.0 32.0 40.0 18.0 41.0 40-41 33.25866999280943 38.0 32.0 40.0 17.0 41.0 42-43 33.280575808454856 38.0 32.0 40.0 16.0 41.0 44-45 33.12791617539179 38.0 32.0 40.0 15.0 41.0 46-47 32.873439924850075 37.5 31.5 40.0 13.5 41.0 48-49 32.595688442551705 37.0 31.0 40.0 10.0 41.0 50-51 32.32720283821703 37.0 31.0 40.0 8.5 41.0 52-53 32.05657761578148 37.0 31.0 40.0 8.0 41.0 54-55 31.763628943615767 36.0 30.0 39.5 7.0 41.0 56-57 31.428685953694668 36.0 30.0 39.0 2.0 41.0 58-59 31.083497764144482 35.0 29.0 39.0 2.0 40.0 60-61 30.738041290089846 35.0 29.0 39.0 2.0 40.0 62-63 30.40721123932007 35.0 28.5 38.5 2.0 40.0 64-65 29.996554216167404 34.5 28.0 38.0 2.0 40.0 66-67 29.556148178994338 34.0 28.0 37.5 2.0 40.0 68-69 29.10435268532664 34.0 27.5 37.0 2.0 39.5 70-71 28.668671209395676 34.0 26.0 36.0 2.0 39.0 72-73 28.225456583002654 33.5 26.0 36.0 2.0 39.0 74-75 27.78370337327287 33.0 26.0 35.5 2.0 38.0 76-77 26.3509094738779 31.5 24.0 34.0 2.0 36.0 78-79 27.19765077800993 33.0 26.0 35.0 2.0 37.0 80-81 27.22611042245201 33.0 26.0 35.0 2.0 36.5 82-83 26.896740275178495 33.0 25.0 35.0 2.0 36.0 84-85 26.581166730421437 33.0 25.0 35.0 2.0 36.0 86-87 26.048289092366133 32.0 23.5 35.0 2.0 35.0 88-89 25.685435132347635 32.0 22.0 35.0 2.0 35.0 90-91 25.315635281969584 32.0 20.0 34.5 2.0 35.0 92-93 25.00293917552979 32.0 19.0 34.0 2.0 35.0 94-95 24.618278966252745 32.0 16.5 34.0 2.0 35.0 96-97 24.08529707099295 31.0 4.5 34.0 2.0 35.0 98-99 23.48286050900516 31.0 2.0 34.0 2.0 35.0 100-101 21.281945073249386 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 76226.0 3 35341.0 4 19271.0 5 13651.0 6 11922.0 7 11882.0 8 13293.0 9 15336.0 10 17421.0 11 19385.0 12 21362.0 13 23578.0 14 25617.0 15 27303.0 16 28403.0 17 29707.0 18 28899.0 19 27961.0 20 28065.0 21 29160.0 22 31550.0 23 35729.0 24 41043.0 25 48607.0 26 57623.0 27 68413.0 28 80119.0 29 94364.0 30 110740.0 31 131844.0 32 158313.0 33 192982.0 34 243206.0 35 315648.0 36 421327.0 37 482183.0 38 268780.0 39 18073.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.08742716222481 18.56150757252091 13.289533889786595 25.061531375467684 2 16.403456315474735 20.00306870262274 37.64689824981055 25.94657673209197 3 19.9052092536447 23.28466068526706 28.789685188060567 28.020444873027678 4 14.084132321307122 15.64385007023588 35.0302539418203 35.2417636666367 5 14.775288142179802 36.68035875449215 33.73795208253508 14.806401020792967 6 34.975593470102 34.38448646310118 16.2713026955037 14.368617371293121 7 30.314264161556626 31.02657363172967 19.902022973442733 18.757139233270973 8 27.410594242505876 34.29694580641916 19.25457350284881 19.037886448226157 9 26.768739799884532 15.67149907791714 18.795033935983053 38.764727186215275 10-11 26.362231745092483 24.93005932024037 26.959569916516575 21.748139018150567 12-13 26.64981348077119 22.1298278060297 27.03662272941017 24.183735983788946 14-15 23.566536233910586 23.87201218267898 24.336225335930372 28.225226247480055 16-17 24.01583971794739 27.003820926149857 25.163919458014178 23.816419897888572 18-19 24.020211745995063 26.075732865849126 26.621597207088772 23.282458181067042 20-21 24.53070046238928 25.327930667947097 26.45544541865863 23.685923451004992 22-23 24.274142362371578 25.20145611475665 26.364024751588317 24.160376771283456 24-25 24.08048833701274 25.4877412323766 26.33414299909626 24.097627431514404 26-27 23.860177492304175 25.657237861188964 26.312121170825364 24.170463475681494 28-29 23.990280877258154 25.728457362503416 26.304377904390986 23.976883855847444 30-31 24.060423269836452 25.58541399556924 26.12994326766905 24.224219466925263 32-33 23.782882622560145 25.59575120892468 26.07814042280539 24.543225745709787 34-35 24.218225372844966 25.655211429780465 26.08035783067123 24.046205366703337 36-37 24.351125777837044 25.369463608207305 26.130345002219634 24.149065611736017 38-39 24.10549334910792 25.513369067331155 26.181917039019847 24.19922054454108 40-41 24.24916518411357 25.388574215291232 26.281662990177157 24.080597610418042 42-43 24.205659780003717 25.313238337781645 26.103507579284198 24.37759430293044 44-45 24.080422713430323 25.369389905007537 26.189040448989232 24.361146932572908 46-47 24.17053677102439 25.405867119075698 26.081877134195857 24.341718975704055 48-49 23.981384419189247 25.49808845715043 26.028020828651517 24.492506295008802 50-51 23.915919958968217 25.705975321302372 26.058904337016337 24.319200382713078 52-53 24.195031154592606 25.389506179845416 26.04228852898115 24.373174136580825 54-55 23.76063706625059 25.379045036237528 26.320418778441805 24.539899119070068 56-57 23.732288876476975 25.568678521270144 26.116879152986368 24.58215344926651 58-59 23.701474785198275 25.355395086874015 26.11321616967445 24.829913958253258 60-61 23.611406458416926 25.42981420438834 26.33033045213943 24.628448885055302 62-63 23.55957145044979 25.45407329700949 26.26061522126937 24.725740031271357 64-65 23.36844851469956 25.361061282130358 26.182833400775223 25.087656802394857 66-67 23.403884601242307 25.382607048910156 26.15205219432422 25.06145615552332 68-69 23.656400915881346 25.22278338146082 26.082277865605107 25.038537837052726 70-71 23.425970461982917 25.122843001604007 26.102756774640568 25.34842976177251 72-73 23.43851026984835 25.129651376052347 26.042119722980463 25.38971863111884 74-75 23.315718236600237 25.267918033688137 25.929040738262017 25.487322991449613 76-77 23.268833928394255 24.915641125925855 26.270890218618515 25.544634727061382 78-79 23.222348975817322 24.9885247865368 26.18006915567113 25.609057081974747 80-81 23.204485192629004 25.08933760321573 26.081495023851613 25.624682180303655 82-83 23.161061777621867 24.996254461730587 26.11104771861156 25.731636042035987 84-85 22.952531265791045 24.949555682913825 26.09907925217255 25.99883379912258 86-87 22.897370610369258 24.921323754665156 26.091608721914806 26.08969691305078 88-89 22.79797164437903 24.775817854262154 25.963801639477314 26.462408861881503 90-91 22.656803097932578 24.759912349458737 26.115986149005316 26.467298403603372 92-93 22.788276464777535 24.60850556891461 26.12721072888281 26.476007237425048 94-95 22.4281735903006 24.466813708014378 26.297375590369597 26.807637111315426 96-97 22.556466070420917 24.206681578106725 26.324018298670364 26.912834052801994 98-99 22.366084122061835 24.274119339551763 26.23245401586854 27.12734252251786 100-101 22.507723236139977 24.051417118307945 26.326523972486136 27.114335673065938 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 56.0 1 45.5 2 60.0 3 106.0 4 106.5 5 93.0 6 161.5 7 342.5 8 523.0 9 573.5 10 503.0 11 449.5 12 463.5 13 503.0 14 558.5 15 618.5 16 680.0 17 722.0 18 813.5 19 941.0 20 1086.0 21 1308.0 22 1589.5 23 1914.5 24 2399.0 25 3069.0 26 3978.0 27 5430.5 28 7415.0 29 10158.5 30 14123.5 31 19647.5 32 27109.0 33 32591.5 34 36470.0 35 42457.5 36 50141.5 37 58429.5 38 66115.5 39 72761.0 40 79497.5 41 87352.0 42 95124.5 43 103466.5 44 111957.0 45 120670.0 46 128308.0 47 134030.5 48 139558.0 49 144153.5 50 145976.5 51 145820.0 52 146066.5 53 147664.5 54 146673.5 55 140071.0 56 130530.5 57 119412.0 58 108264.5 59 95493.0 60 80005.0 61 66082.5 62 53979.0 63 41654.0 64 30927.0 65 23115.5 66 17705.5 67 13659.0 68 10448.0 69 8006.5 70 6063.0 71 4489.0 72 3252.5 73 2506.5 74 1980.0 75 1448.5 76 1007.0 77 637.0 78 376.0 79 207.5 80 106.0 81 43.5 82 22.5 83 12.5 84 7.5 85 5.5 86 3.5 87 1.0 88 0.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1941998494096228 2 0.0 3 0.012680339239930175 4 0.01395139949787067 5 0.00696056807919795 6 0.10810064860389161 7 0.14462849934994348 8 0.12640996898612972 9 0.14323638573410388 10-11 0.11658951532656564 12-13 0.11693754373052555 14-15 0.11816320897925388 16-17 0.06806225047876603 18-19 0.08121167148055519 20-21 0.03834365111453827 22-23 0.08481300887805328 24-25 0.058604956892899254 26-27 0.06697277025767417 28-29 0.04100682498831835 30-31 0.025194230112749096 32-33 0.032760064981442516 34-35 0.019444195612542098 36-37 0.025920550260143664 38-39 0.034031125239383016 40-41 0.02738832222467019 42-43 0.013739556121547257 44-45 0.027479112243094513 46-47 0.03397059856043347 48-49 0.009729663641139741 50-51 0.016569178362438597 52-53 0.007278333143683072 54-55 0.013104025992577008 56-57 0.004675685948852535 58-59 0.003571074058023296 60-61 0.023560009781111318 62-63 0.010471115458271696 64-65 0.0075355715292186485 66-67 0.04126406337385393 68-69 0.09160712859013996 70-71 0.02181986776131183 72-73 0.046257514387191584 74-75 0.08771828946763155 76-77 0.2598712960698817 78-79 0.08009192791998858 80-81 0.017189576821671455 82-83 0.012014545771485155 84-85 0.01324021102021349 86-87 0.2729601903927213 88-89 0.6289175892950094 90-91 0.27143189174924526 92-93 0.35470147031408505 94-95 0.001271060257940495 96-97 0.0046454226093777615 98-99 0.0035559423882859085 100-101 0.005311216077822783 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3304328.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.515322909942235 #Duplication Level Percentage of deduplicated Percentage of total 1 71.13964648862259 35.22502567583285 2 13.41672637122823 13.286670773314066 3 5.753354826029847 8.546376660790274 4 2.968961808761222 5.880364106723923 5 1.8283705112250577 4.526617813116245 6 1.1794068896829224 3.503922779091631 7 0.7756207454318506 2.6883578165995727 8 0.5411258342020768 2.1435216332342155 9 0.4168340202678148 1.857570400206923 >10 1.8594704756765785 15.745463988679893 >50 0.08827619158525739 2.969588290467209 >100 0.02993575510731311 2.4866538638620375 >500 0.0012884250221852195 0.4522887976678875 >1k 9.816571570888098E-4 0.687577400413382 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.0526678949547384E-5 2 0.0 0.0 0.0 0.0 6.0526678949547384E-5 3 0.0 0.0 0.0 0.0 6.0526678949547384E-5 4 0.0 0.0 0.0 0.0 6.0526678949547384E-5 5 3.0263339474773692E-5 0.0 0.0 0.0 6.0526678949547384E-5 6 3.0263339474773692E-5 0.0 0.0 0.0 9.079001842432107E-5 7 3.0263339474773692E-5 0.0 0.0 0.0 9.079001842432107E-5 8 3.0263339474773692E-5 0.0 0.0 0.0 9.079001842432107E-5 9 3.0263339474773692E-5 0.0 0.0 0.0 1.2105335789909477E-4 10-11 3.0263339474773692E-5 0.0 0.0 0.0 1.361850276364816E-4 12-13 3.0263339474773692E-5 0.0 0.0 0.0 1.5131669737386845E-4 14-15 3.0263339474773692E-5 0.0 0.0 3.0263339474773692E-5 1.8158003684864215E-4 16-17 3.0263339474773692E-5 0.0 0.0 3.0263339474773692E-5 2.1184337632341584E-4 18-19 3.0263339474773692E-5 0.0 0.0 3.0263339474773692E-5 2.269750460608027E-4 20-21 3.0263339474773692E-5 0.0 0.0 4.5395009212160536E-5 2.4210671579818954E-4 22-23 3.0263339474773692E-5 0.0 0.0 1.8158003684864215E-4 2.8750172501035005E-4 24-25 3.0263339474773692E-5 0.0 0.0 5.90135119758087E-4 3.026333947477369E-4 26-27 3.0263339474773692E-5 0.0 0.0 0.0013013235974152688 3.026333947477369E-4 28-29 3.0263339474773692E-5 0.0 0.0 0.006642803014712826 3.026333947477369E-4 30-31 3.0263339474773692E-5 0.0 0.0 0.027282400536508482 3.026333947477369E-4 32-33 3.0263339474773692E-5 0.0 0.0 0.06966620747092904 3.93423413172058E-4 34-35 3.0263339474773692E-5 0.0 0.0 0.12473035364527976 4.3881842238421853E-4 36-37 3.0263339474773692E-5 0.0 0.0 0.21662498396043006 4.8421343159637907E-4 38-39 3.0263339474773692E-5 0.0 0.0 0.3684107630961575 5.144767710711527E-4 40-41 3.0263339474773692E-5 0.0 0.0 0.5441651070959057 5.447401105459264E-4 42-43 3.0263339474773692E-5 0.0 0.0 0.7272885742577613 5.447401105459264E-4 44-45 3.0263339474773692E-5 0.0 0.0 0.950934652976339 5.90135119758087E-4 46-47 3.0263339474773692E-5 0.0 0.0 1.2175244104096203 6.203984592328606E-4 48-49 3.0263339474773692E-5 0.0 0.0 1.5083097077529835 6.960568079197949E-4 50-51 3.0263339474773692E-5 0.0 0.0 1.8233813350248522 6.960568079197949E-4 52-53 3.0263339474773692E-5 0.0 0.0 2.1365161085703352 7.565834868693423E-4 54-55 3.0263339474773692E-5 0.0 0.0 2.4864813662566183 8.322418355562766E-4 56-57 3.0263339474773692E-5 0.0 0.0 2.897170014599035 8.473735052936634E-4 58-59 3.0263339474773692E-5 0.0 0.0 3.339045034270206 8.473735052936634E-4 60-61 3.0263339474773692E-5 0.0 0.0 3.8119853719122316 8.776368447684371E-4 62-63 3.0263339474773692E-5 0.0 0.0 4.290721139063677 8.776368447684371E-4 64-65 3.0263339474773692E-5 0.0 0.0 4.798358395413531 8.776368447684371E-4 66-67 3.0263339474773692E-5 0.0 0.0 5.37764410796991 8.92768514505824E-4 68-69 3.0263339474773692E-5 0.0 0.0 6.009103817780801 9.079001842432108E-4 70-71 3.0263339474773692E-5 0.0 0.0 6.679739420541786 9.079001842432108E-4 72-73 3.0263339474773692E-5 0.0 0.0 7.370273169007435 9.986902026675318E-4 74-75 3.0263339474773692E-5 0.0 0.0 8.075666217155199 0.0010289535421423054 76-77 3.0263339474773692E-5 0.0 0.0 8.851920874683142 0.0010289535421423054 78-79 3.0263339474773692E-5 0.0 0.0 9.69371079384371 0.0010289535421423054 80-81 3.0263339474773692E-5 0.0 0.0 10.567201561104103 0.0010743485513544661 82-83 3.0263339474773692E-5 0.0 0.0 11.460635869078372 0.0011500069000414002 84-85 3.0263339474773692E-5 0.0 0.0 12.361182061829213 0.001195401909253561 86-87 3.0263339474773692E-5 0.0 0.0 13.285772477792761 0.0012407969184657214 88-89 3.0263339474773692E-5 0.0 0.0 14.26102372403708 0.0012407969184657214 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4815 0.0 47.312237 1 GGTATCA 2410 0.0 45.7831 1 TCAACGC 6265 0.0 35.838577 4 ATCAACG 6350 0.0 35.35885 3 CAACGCA 6500 0.0 34.39108 5 TATCAAC 6705 0.0 33.697613 2 AACGCAG 6885 0.0 32.674778 6 GTACATG 10200 0.0 26.670437 1 ACGCAGA 8335 0.0 26.363745 7 TACATGG 10250 0.0 25.655283 2 CGCAGAG 8715 0.0 24.776663 8 ACATGGG 11000 0.0 23.691378 3 GCAGAGT 9775 0.0 20.97325 9 CATGGGG 8105 0.0 20.557238 4 GAGTACA 7500 0.0 20.101675 1 AGAGTAC 8370 0.0 18.652752 10-11 AGTACAT 7780 0.0 17.998379 2 CGTACAC 430 6.91216E-11 16.558977 3 CAGAGTA 9175 0.0 15.98177 10-11 GGACCGT 510 3.6379788E-12 15.820384 6 >>END_MODULE