Basic Statistics
Measure | Value |
---|---|
Filename | SRR2920856_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3556680 |
Sequences flagged as poor quality | 0 |
Sequence length | 98 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3310 | 0.0 | 47.553677 | 1 |
GTATCAA | 6080 | 0.0 | 41.860798 | 1 |
TCAACGC | 7860 | 0.0 | 31.908806 | 4 |
ATCAACG | 7910 | 0.0 | 31.70711 | 3 |
TATCAAC | 8155 | 0.0 | 30.980736 | 2 |
CAACGCA | 8150 | 0.0 | 30.604626 | 5 |
AACGCAG | 8645 | 0.0 | 28.793135 | 6 |
GTACATG | 11365 | 0.0 | 26.201178 | 1 |
TACATGG | 11565 | 0.0 | 25.215965 | 2 |
ACGCAGA | 10060 | 0.0 | 24.28446 | 7 |
ACATGGG | 12375 | 0.0 | 23.082808 | 3 |
CGCAGAG | 10585 | 0.0 | 23.035711 | 8 |
TATAGCG | 145 | 3.0694086E-5 | 22.134811 | 5 |
CATGGGG | 8400 | 0.0 | 21.560736 | 4 |
TAAGGCG | 1145 | 0.0 | 21.223461 | 5 |
GCAGAGT | 12245 | 0.0 | 19.01454 | 9 |
GAGTACA | 8810 | 0.0 | 18.806698 | 1 |
AGTACAT | 8760 | 0.0 | 17.901363 | 2 |
AGAGTAC | 10125 | 0.0 | 17.654797 | 10-11 |
GTATTAG | 845 | 0.0 | 17.429272 | 1 |