##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920856_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3556680 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.80103129885174 31.0 30.0 33.0 23.0 34.0 2 28.83494326169349 31.0 29.0 34.0 22.0 34.0 3 28.907244958781785 31.0 28.0 34.0 22.0 34.0 4 32.416325055951056 35.0 33.0 37.0 25.0 37.0 5 32.39327884431548 35.0 33.0 37.0 25.0 37.0 6 32.52072044715859 35.0 33.0 37.0 25.0 37.0 7 32.361014485418984 35.0 32.0 37.0 24.0 37.0 8 32.30945263560399 35.0 32.0 37.0 23.0 37.0 9 33.59427246758213 37.0 33.0 39.0 23.0 39.0 10-11 33.3993664034999 37.0 33.0 39.0 22.5 39.0 12-13 33.23726410585152 37.0 33.0 39.0 22.0 39.0 14-15 34.00660320861028 38.0 33.0 40.0 19.0 41.0 16-17 33.90485480841684 38.0 33.0 40.0 19.0 41.0 18-19 33.80716876412835 38.0 32.0 40.0 18.0 41.0 20-21 33.71692378847689 38.0 32.0 40.0 18.0 41.0 22-23 33.497832669793176 38.0 32.0 40.0 18.0 41.0 24-25 33.308352874028586 38.0 32.0 40.0 17.0 41.0 26-27 33.347550805807664 38.0 32.0 40.0 16.5 41.0 28-29 33.19409519551942 38.0 32.0 40.0 16.0 41.0 30-31 32.9448020344816 38.0 31.5 40.0 12.5 41.0 32-33 32.70167375192595 38.0 31.0 40.0 9.5 41.0 34-35 32.36828348347335 37.0 30.5 40.0 8.5 41.0 36-37 32.06409165288977 37.0 30.0 40.0 8.0 41.0 38-39 31.868931559769223 37.0 30.0 40.0 7.5 41.0 40-41 31.677906643274063 37.0 30.0 40.0 4.0 41.0 42-43 31.44253714137904 37.0 30.0 40.0 2.0 41.0 44-45 31.16656080951899 36.0 30.0 40.0 2.0 41.0 46-47 30.91404034099216 36.0 29.0 39.0 2.0 41.0 48-49 30.61519886523387 36.0 28.5 39.0 2.0 40.0 50-51 29.464731997255868 34.5 27.0 38.0 2.0 39.5 52-53 29.90239043152603 35.0 28.0 38.5 2.0 39.5 54-55 30.565425059324987 36.0 29.0 39.0 2.0 40.0 56-57 30.519010847194576 36.0 28.5 39.0 2.0 41.0 58-59 30.28612877739915 35.5 28.0 39.0 2.0 41.0 60-61 29.961506095572275 35.0 28.0 39.0 2.0 40.0 62-63 29.58085152445539 35.0 28.0 39.0 2.0 40.0 64-65 29.17001318645478 34.5 26.5 38.0 2.0 40.0 66-67 28.786667200872724 34.0 26.0 38.0 2.0 40.0 68-69 28.339370564683918 34.0 26.0 37.0 2.0 40.0 70-71 28.01014049619308 34.0 26.0 37.0 2.0 39.0 72-73 27.545439004914698 33.5 25.0 36.0 2.0 39.0 74-75 27.099537771179865 33.0 24.5 36.0 2.0 39.0 76-77 26.67051857350113 33.0 23.5 35.0 2.0 37.5 78-79 26.199304829222758 33.0 22.0 35.0 2.0 37.0 80-81 25.7357133618993 32.0 20.0 35.0 2.0 36.5 82-83 25.242880298480607 32.0 18.5 35.0 2.0 36.0 84-85 24.828332321153436 32.0 16.5 35.0 2.0 35.5 86-87 24.34869021109574 31.5 8.5 34.0 2.0 35.0 88-89 23.792441406030342 31.0 2.0 34.0 2.0 35.0 90-91 23.281545992329924 31.0 2.0 34.0 2.0 35.0 92-93 22.72127335042793 31.0 2.0 34.0 2.0 35.0 94-95 22.067428332039995 30.0 2.0 34.0 2.0 35.0 96-97 21.416939814658615 29.5 2.0 34.0 2.0 35.0 98 21.01654604856214 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 158882.0 3 28881.0 4 21153.0 5 17592.0 6 16365.0 7 16961.0 8 19320.0 9 22384.0 10 24388.0 11 26586.0 12 27929.0 13 27990.0 14 26393.0 15 27992.0 16 30072.0 17 32575.0 18 33377.0 19 32607.0 20 33897.0 21 35986.0 22 38753.0 23 43742.0 24 49825.0 25 57390.0 26 66336.0 27 76809.0 28 89018.0 29 103094.0 30 119809.0 31 139784.0 32 166745.0 33 201919.0 34 249099.0 35 316416.0 36 403257.0 37 455871.0 38 284994.0 39 32487.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.14994939292687 18.239099716402762 13.114078365440946 24.496872525229428 2 15.978063391174732 19.801670557133615 39.00734032679922 25.212925724892425 3 18.94699810206338 23.984080842145048 29.496111746818798 27.57280930897278 4 13.256393708160916 15.809180730785833 36.67452654431129 34.25989901674196 5 14.209899176873142 37.0087892253597 34.37815239250684 14.40315920526032 6 33.23621686744278 35.24177500402152 17.292486672733634 14.229521455802072 7 28.845799091586034 31.836051301317625 21.202849873231482 18.115299733864852 8 26.628285801535647 34.171154963352215 20.29443076288015 18.906128472231988 9 26.846694107988352 15.528582835678218 19.774087069964125 37.85063598636931 10-11 25.435525668748856 25.337203610446714 27.968436285647368 21.258834435157066 12-13 26.093420581286864 22.84647854295318 27.661119755801707 23.39898111995825 14-15 23.308759872989164 24.46871923806996 25.22474748681797 26.997773402122903 16-17 23.3261074917857 27.321863370157057 26.04369218336776 23.308336954689487 18-19 23.302085431121483 26.544904948398628 27.514912812643093 22.638096807836796 20-21 24.131704992500197 25.931094681253843 27.079638596917267 22.857561729328694 22-23 23.88364772572639 25.744742618712802 26.859297178946917 23.512312476613886 24-25 23.522104911320948 25.868122864896893 27.02918848778852 23.580583735993642 26-27 23.343572303765534 26.087215881232634 26.94162802021607 23.627583794785764 28-29 23.431146796153104 26.248996006532465 26.870466204630393 23.449390992684034 30-31 23.624501333294322 26.027103613243092 26.66443771100413 23.683957342458456 32-33 23.413691228209306 26.182367946045794 26.507981302647472 23.895959523097428 34-35 23.85910551298772 26.084868418453638 26.560828988291384 23.495197080267253 36-37 23.972903277973376 25.753223111008577 26.614085873668692 23.659787737349355 38-39 23.660889641198963 25.937172375400213 26.585342764212022 23.816595219188805 40-41 23.821987790197593 25.808698399680193 26.73150601269816 23.637807797424053 42-43 23.72324947030682 25.798875618352003 26.51080133447939 23.967073576861793 44-45 23.619719737726065 25.830915826716666 26.66090682125154 23.88845761430573 46-47 23.71090410417336 25.804664362841823 26.466471582826507 24.017959950158314 48-49 23.427045732795424 25.873188962326804 26.492058992279233 24.207706312598543 50-51 23.411189363840464 26.012404391696204 26.581575470402242 23.99483077406109 52-53 23.579056810604946 25.846353136618937 26.640339823928937 23.934250228847176 54-55 23.21363059810024 25.783197580074972 26.80823015223982 24.194941669584967 56-57 23.188042717974405 25.848757989708155 26.737498942613907 24.22570034970353 58-59 23.19829147325132 25.595340381594507 26.83835713151067 24.368011013643503 60-61 23.06827385235235 25.548095179925763 27.032875472294972 24.35075549542692 62-63 23.078659734906925 25.527403968814138 27.0798914913501 24.314044804928834 64-65 22.939819932320997 25.53452074126237 26.85182451488592 24.673834811530718 66-67 22.925974745842723 25.586595320406097 26.80824296010023 24.679186973650953 68-69 23.200296426250556 25.29648979467342 26.82639210335832 24.676821675717704 70-71 22.977139856764182 25.29828563040416 26.845113919619696 24.879460593211967 72-73 23.02784727809414 25.331831571406816 26.773963331963945 24.866357818535093 74-75 23.05856812158767 25.568231363566195 26.69494407214393 24.678256442702203 76-77 23.094299795831695 25.337371548222244 26.807143492082304 24.76118516386376 78-79 23.078998282008044 25.449138633598146 26.690181822696907 24.781681261696907 80-81 23.213134075943337 25.43251100946095 26.65659823955876 24.697756675036953 82-83 23.219286400799717 25.36382066984293 26.70229013450453 24.714602794852823 84-85 23.153240236392474 25.354377042610476 26.709301603607976 24.783081117389074 86-87 23.22680948670205 25.362647955469903 26.706418224369283 24.704124333458765 88-89 23.242725770306382 25.201529461385448 26.588775442794542 24.966969325513627 90-91 23.247331779470382 25.226827675319036 26.63422333289491 24.891617212315673 92-93 23.527558241790494 25.046721560384405 26.610743785792586 24.814976412032514 94-95 23.406550496331615 24.968469913375348 26.723669431755653 24.90131015853738 96-97 23.69137534413909 24.722977646147186 26.676263776676823 24.9093832330369 98 23.73494842989528 24.69678133118464 26.502955632352922 25.065314606567163 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 110.0 1 102.5 2 163.5 3 261.0 4 268.5 5 301.0 6 440.0 7 786.0 8 1194.5 9 1362.5 10 1339.5 11 1367.5 12 1537.0 13 1710.0 14 1895.5 15 2087.0 16 2206.5 17 2262.5 18 2342.5 19 2463.5 20 2529.5 21 2623.5 22 2864.0 23 3265.0 24 3892.5 25 4932.0 26 6560.0 27 8983.0 28 12146.0 29 16512.0 30 22797.5 31 31151.0 32 39002.5 33 46330.0 34 54965.0 35 64288.0 36 74043.0 37 83060.5 38 90814.0 39 98472.0 40 105802.5 41 112597.0 42 121047.0 43 130679.0 44 138424.5 45 144508.0 46 150288.0 47 155254.0 48 158023.5 49 157962.5 50 157358.0 51 156191.0 52 152989.5 53 150094.5 54 145588.5 55 137148.0 56 125340.0 57 111721.5 58 99880.5 59 86667.5 60 71750.0 61 58808.5 62 47886.5 63 36964.0 64 27070.0 65 20269.0 66 15207.5 67 11488.0 68 8696.5 69 6528.0 70 4798.0 71 3567.5 72 2842.0 73 2272.0 74 1711.0 75 1233.5 76 811.5 77 469.5 78 272.0 79 148.0 80 81.5 81 64.5 82 47.5 83 30.5 84 20.5 85 13.0 86 10.0 87 5.0 88 4.0 89 5.0 90 5.0 91 4.0 92 3.5 93 2.0 94 1.5 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.412885050102905 2 0.027553786115141088 3 0.020046785204179178 4 0.018134889841087756 5 0.02387057593036202 6 0.022830279923974045 7 0.016644736102207677 8 0.011077746662617946 9 0.0 10-11 2.8116108280756215E-5 12-13 0.006354240471450904 14-15 0.003739442401340576 16-17 0.006508879066995063 18-19 0.03790051396245937 20-21 0.08208497812566776 22-23 0.09999493910050947 24-25 0.06753489209037641 26-27 0.07800814242495811 28-29 0.05974673009660695 30-31 0.05485452725575537 32-33 0.021804041971726442 34-35 0.35971748934399495 36-37 0.5523971793920173 38-39 0.5046841436395739 40-41 0.5143420268340138 42-43 0.4617508462948593 44-45 0.43571533002687896 46-47 0.43488590483259665 48-49 0.4235410551413116 50-51 0.4203498768514457 52-53 0.48359706242900685 54-55 0.48448271983985064 56-57 0.4529364463488421 58-59 0.4391033210747101 60-61 0.45330195575649196 62-63 0.43286154503638224 64-65 0.4829644499926898 66-67 0.5054011044007333 68-69 0.44516234240921315 70-71 0.4012168651663911 72-73 0.38604822474892314 74-75 0.36823667015306405 76-77 0.3664934714396572 78-79 0.3657343365160768 80-81 0.3821260276437577 82-83 0.3772197667487657 84-85 0.37731817312774835 86-87 0.36324606093322986 88-89 0.4081896600200187 90-91 0.3846845934973065 92-93 0.37529381333153394 94-95 0.3833771944622513 96-97 0.38236501456414407 98 0.37802107583476724 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3556680.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.61071637549134 #Duplication Level Percentage of deduplicated Percentage of total 1 75.92745298807986 43.74234959209723 2 12.543738558574713 14.453075287727248 3 4.72542692003768 8.167056901302072 4 2.3391691067256035 5.390448318475208 5 1.3155300844786162 3.7894315290161864 6 0.75790111876422 2.6197935836275836 7 0.513219079441094 2.0696843176920137 8 0.3493788499794552 1.6102372667009386 9 0.26749605978909496 1.3869575668863923 >10 1.1852213538574092 11.729096106119815 >50 0.05240836292499274 2.054730309814722 >100 0.021487203686634957 2.092025841699887 >500 9.81446044296696E-4 0.38397542813681373 >1k 5.888676162712983E-4 0.5111379507040094 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.811610828075621E-5 2 0.0 0.0 0.0 0.0 2.811610828075621E-5 3 0.0 0.0 0.0 0.0 2.811610828075621E-5 4 0.0 0.0 0.0 0.0 5.623221656151242E-5 5 0.0 0.0 0.0 2.811610828075621E-5 5.623221656151242E-5 6 0.0 0.0 0.0 2.811610828075621E-5 1.4058054140378106E-4 7 0.0 0.0 0.0 2.811610828075621E-5 1.4058054140378106E-4 8 0.0 0.0 0.0 2.811610828075621E-5 1.4058054140378106E-4 9 0.0 0.0 0.0 5.623221656151242E-5 2.249288662460497E-4 10-11 0.0 0.0 0.0 5.623221656151242E-5 2.811610828075621E-4 12-13 0.0 0.0 0.0 5.623221656151242E-5 7.310188152996615E-4 14-15 0.0 0.0 0.0 5.623221656151242E-5 8.575413025630644E-4 16-17 0.0 0.0 0.0 5.623221656151242E-5 8.997154649841988E-4 18-19 0.0 0.0 0.0 8.434832484226863E-5 9.27831573264955E-4 20-21 0.0 0.0 0.0 1.2652248726340294E-4 9.700057356860892E-4 22-23 0.0 0.0 0.0 3.0927719108831835E-4 0.0010121798981072236 24-25 0.0 0.0 0.0 0.001068412114668736 0.0010121798981072236 26-27 0.0 0.0 0.0 0.002403927258004656 0.0010402960063879798 28-29 0.0 0.0 0.0 0.00830830999696346 0.0010402960063879798 30-31 0.0 0.0 0.0 0.03410483934455728 0.0010402960063879798 32-33 0.0 0.0 0.0 0.0931064925717242 0.001068412114668736 34-35 0.0 0.0 0.0 0.1761895925413588 0.0011527604395110047 36-37 0.0 0.0 0.0 0.3114843055883577 0.001180876547791761 38-39 0.0 0.0 0.0 0.5253494832259298 0.0012933409809147856 40-41 0.0 2.811610828075621E-5 0.0 0.7662061248130279 0.0012933409809147856 42-43 0.0 2.811610828075621E-5 0.0 1.0240870699641238 0.0012933409809147856 44-45 0.0 2.811610828075621E-5 0.0 1.3366819618295713 0.0014198634681781886 46-47 0.0 2.811610828075621E-5 0.0 1.707912997514536 0.0015604440095819698 48-49 0.0 2.811610828075621E-5 0.0 2.1025928675056513 0.0016729084427049945 50-51 0.0 2.811610828075621E-5 0.0 2.5210027328857247 0.001743198713406885 52-53 0.0 2.811610828075621E-5 0.0 2.9483675787532193 0.0019118953630914224 54-55 0.0 2.811610828075621E-5 0.0 3.429616946140783 0.0019400114713721787 56-57 0.0 2.811610828075621E-5 0.0 3.984938200793999 0.0019400114713721787 58-59 0.0 2.811610828075621E-5 0.0 4.572030657804469 0.0019400114713721787 60-61 0.0 2.811610828075621E-5 0.0 5.194127669624481 0.001982185633793313 62-63 1.4058054140378106E-5 2.811610828075621E-5 0.0 5.815676417333019 0.002024359796214447 64-65 2.811610828075621E-5 2.811610828075621E-5 0.0 6.487342128052004 0.0020524759044952033 66-67 2.811610828075621E-5 2.811610828075621E-5 0.0 7.2600430738778865 0.0020665339586355812 68-69 2.811610828075621E-5 2.811610828075621E-5 0.0 8.095934973064768 0.002094650066916338 70-71 2.811610828075621E-5 2.811610828075621E-5 0.0 8.962051688653464 0.0021649403376182283 72-73 2.811610828075621E-5 2.811610828075621E-5 0.0 9.836659468942948 0.002277404770741253 74-75 2.811610828075621E-5 2.811610828075621E-5 0.0 10.735123767108652 0.002403927258004656 76-77 2.811610828075621E-5 2.811610828075621E-5 0.0 11.723123812094425 0.0024461014204257905 78-79 2.811610828075621E-5 2.811610828075621E-5 0.0 12.791957668387372 0.0024882755828469247 80-81 2.811610828075621E-5 2.811610828075621E-5 0.0 13.877351912457684 0.002530449745268059 82-83 2.811610828075621E-5 2.811610828075621E-5 0.0 14.980220317824488 0.0025866819618295712 84-85 2.811610828075621E-5 2.811610828075621E-5 0.0 16.086195553156315 0.0026429141783910837 86 2.811610828075621E-5 2.811610828075621E-5 0.0 16.944734977563346 0.0026429141783910837 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3310 0.0 47.553677 1 GTATCAA 6080 0.0 41.860798 1 TCAACGC 7860 0.0 31.908806 4 ATCAACG 7910 0.0 31.70711 3 TATCAAC 8155 0.0 30.980736 2 CAACGCA 8150 0.0 30.604626 5 AACGCAG 8645 0.0 28.793135 6 GTACATG 11365 0.0 26.201178 1 TACATGG 11565 0.0 25.215965 2 ACGCAGA 10060 0.0 24.28446 7 ACATGGG 12375 0.0 23.082808 3 CGCAGAG 10585 0.0 23.035711 8 TATAGCG 145 3.0694086E-5 22.134811 5 CATGGGG 8400 0.0 21.560736 4 TAAGGCG 1145 0.0 21.223461 5 GCAGAGT 12245 0.0 19.01454 9 GAGTACA 8810 0.0 18.806698 1 AGTACAT 8760 0.0 17.901363 2 AGAGTAC 10125 0.0 17.654797 10-11 GTATTAG 845 0.0 17.429272 1 >>END_MODULE