##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920853_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3312010 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.215877971382938 31.0 30.0 34.0 26.0 34.0 2 30.231385170938495 31.0 30.0 34.0 26.0 34.0 3 30.37027364047814 31.0 30.0 34.0 26.0 34.0 4 34.006846899616846 35.0 35.0 37.0 30.0 37.0 5 33.52656966615439 35.0 35.0 37.0 28.0 37.0 6 33.47059066850644 35.0 35.0 37.0 28.0 37.0 7 33.28770716271992 35.0 33.0 37.0 27.0 37.0 8 33.21978103930846 35.0 33.0 37.0 27.0 37.0 9 34.542226019848975 38.0 34.0 39.0 27.0 39.0 10-11 34.35530448277632 37.5 34.0 39.0 27.0 39.0 12-13 34.17039546982044 37.0 34.0 39.0 26.0 39.0 14-15 35.06708584817075 38.0 34.0 40.0 26.0 41.0 16-17 34.944008170265185 38.0 34.0 40.0 25.0 41.0 18-19 34.85217118909665 38.0 33.5 40.0 25.0 41.0 20-21 34.73735058167095 38.0 34.0 40.0 25.0 41.0 22-23 34.58939420472764 38.0 33.5 40.0 24.0 41.0 24-25 34.40359962681272 38.0 33.0 40.0 23.5 41.0 26-27 34.22149389645563 38.0 33.0 40.0 23.0 41.0 28-29 34.166220814550684 38.0 33.0 40.0 22.5 41.0 30-31 34.15596963777283 38.0 33.0 40.0 22.5 41.0 32-33 34.00690758783941 38.0 33.0 40.0 21.5 41.0 34-35 33.83672377196929 38.0 33.0 40.0 20.0 41.0 36-37 33.639252296943546 38.0 32.5 40.0 18.5 41.0 38-39 33.460430524062424 38.0 32.0 40.0 18.0 41.0 40-41 33.22499056464201 38.0 32.0 40.0 16.0 41.0 42-43 33.24929921709173 38.0 32.0 40.0 16.0 41.0 44-45 33.10473005818219 38.0 32.0 40.0 15.0 41.0 46-47 32.858334666863925 37.5 31.5 40.0 13.5 41.0 48-49 32.593909740610684 37.0 31.0 40.0 9.0 41.0 50-51 32.33406556743488 37.0 31.0 40.0 8.5 41.0 52-53 32.07467655592828 37.0 31.0 40.0 8.0 41.0 54-55 31.795290926053966 36.0 30.0 40.0 7.0 41.0 56-57 31.47791990362348 36.0 30.0 39.0 2.0 41.0 58-59 31.146339684964722 35.5 29.0 39.0 2.0 40.5 60-61 30.822639877295057 35.0 29.0 39.0 2.0 40.0 62-63 30.506287722561225 35.0 28.5 39.0 2.0 40.0 64-65 30.10575270002204 35.0 28.0 38.0 2.0 40.0 66-67 29.679085510007518 34.0 28.0 38.0 2.0 40.0 68-69 29.241518141551506 34.0 28.0 37.0 2.0 39.5 70-71 28.817683974384135 34.0 26.5 36.5 2.0 39.0 72-73 28.370834478156766 34.0 26.0 36.0 2.0 39.0 74-75 27.930130645740803 33.0 26.0 35.5 2.0 38.5 76-77 26.468289799849636 31.5 24.5 34.5 2.0 36.0 78-79 27.309403806147927 33.0 26.0 35.0 2.0 37.0 80-81 27.33000262680366 33.0 26.0 35.0 2.0 36.5 82-83 26.987474977430622 33.0 25.0 35.0 2.0 36.0 84-85 26.665258559001934 33.0 25.0 35.0 2.0 36.0 86-87 26.114730631851955 32.0 24.0 35.0 2.0 35.0 88-89 25.747235817524704 32.0 22.0 35.0 2.0 35.0 90-91 25.373950863674928 32.0 20.0 34.5 2.0 35.0 92-93 25.059762198785634 32.0 19.5 34.0 2.0 35.0 94-95 24.67523709167545 32.0 17.0 34.0 2.0 35.0 96-97 24.132119770169776 31.0 4.5 34.0 2.0 35.0 98-99 23.515419639433453 31.0 2.0 34.0 2.0 35.0 100-101 21.30360219323009 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 78835.0 3 36190.0 4 19300.0 5 13577.0 6 11838.0 7 11533.0 8 13172.0 9 15285.0 10 17358.0 11 19332.0 12 21177.0 13 23217.0 14 25228.0 15 26660.0 16 28606.0 17 29567.0 18 28895.0 19 27976.0 20 27665.0 21 28831.0 22 31020.0 23 35249.0 24 40795.0 25 48451.0 26 57609.0 27 67833.0 28 80464.0 29 94357.0 30 111179.0 31 131569.0 32 157866.0 33 192879.0 34 242302.0 35 313545.0 36 416098.0 37 488230.0 38 278432.0 39 19889.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.6723798898095 19.08207050691746 13.172732630111557 25.072816973161483 2 16.307015981231938 20.763403492139215 37.73747663805363 25.192103888575218 3 19.35060044757645 24.198509910427333 29.034310470456543 27.416579171539667 4 13.84189321323592 16.236674604579026 35.719186334792276 34.20224584739278 5 14.594855251095778 36.829232647825776 33.96852591518097 14.607386185897475 6 34.01113102332207 34.95490735582732 16.83291465298598 14.201046967864633 7 29.741388824467997 31.339668721046504 20.655119687304502 18.263822767181 8 26.836087994369755 34.579460724918434 19.840542854447968 18.743908426263843 9 26.91798667828162 15.680972995233777 19.24888222201594 38.15215810446866 10-11 25.84937046499621 25.38169300359475 27.426654003015578 21.34228252839346 12-13 26.479013481665557 22.474853464592623 27.46781102906314 23.578322024678677 14-15 23.348842791109913 24.137288930255504 24.836363229647088 27.6775050489875 16-17 23.708514608818845 27.35054110345313 25.55106262092061 23.389881666807412 18-19 23.65297149982451 26.372917422421242 27.033307794431533 22.940803283322715 20-21 24.338292727276023 25.755809703771405 26.696078899247723 23.209818669704845 22-23 24.04040455931543 25.50534407153915 26.655341608694116 23.798909760451302 24-25 23.90749912539508 25.78647978620366 26.694543250799228 23.61147783760203 26-27 23.588942156987894 26.069033341365095 26.585352036503963 23.75667246514305 28-29 23.612043295791548 26.121798260266498 26.657045111160382 23.609113332781572 30-31 23.796523795149657 25.867227838148377 26.499013867763 23.83723449893897 32-33 23.63956598763576 25.95685277156391 26.401668781134667 24.00191245966566 34-35 24.054991950342476 25.985762177692827 26.251788938613924 23.70745693335077 36-37 24.112949123938492 25.604921183834822 26.437863289073345 23.84426640315334 38-39 23.886967631255455 25.7928182886276 26.52660446825797 23.793609611858976 40-41 24.033545328429316 25.58288081085746 26.553431477141782 23.830142383571445 42-43 23.933236511196124 25.510750865790115 26.430072981988456 24.125939641025308 44-45 23.728281705335192 25.722337441042846 26.468405730920715 24.080975122701247 46-47 23.69161797958805 25.7578066326986 26.35346856831069 24.197106819402663 48-49 23.717103529887435 25.735486948002624 26.339958713477785 24.207450808632153 50-51 23.659073888412433 25.798676120646963 26.318096440262362 24.224153550678245 52-53 23.848635441030556 25.62078661354697 26.333472835943116 24.197105109479352 54-55 23.411779502393333 25.458091675860384 26.578353640538094 24.551775181208193 56-57 23.316250542565438 25.72929475928966 26.50646738002227 24.447987318122628 58-59 23.34809736348984 25.42305302308841 26.483523849610403 24.745325763811348 60-61 23.282979841137273 25.45042640582854 26.704600278416724 24.561993474617463 62-63 23.163298105959324 25.497221724404547 26.61348413711303 24.725996032523103 64-65 23.00021438622131 25.409477682696313 26.509475267076922 25.08083266400546 66-67 22.9698291420554 25.59958859980457 26.346739079544925 25.083843178595107 68-69 23.033965758328247 25.37527096481152 26.46490233178574 25.12586094507449 70-71 22.867233973799983 25.351411057581597 26.375402698219634 25.405952270398785 72-73 22.954351376684134 25.419940692222116 26.266965954363158 25.35874197673059 74-75 22.78125646414401 25.579568824879246 26.068293997844442 25.5708807131323 76-77 22.788271803291142 25.420588020277645 26.279979917906797 25.511160258524406 78-79 22.777851223936164 25.499270616693398 26.1585938426602 25.564284316710246 80-81 22.618886021890486 25.70019041573624 26.029322302075066 25.651601260298207 82-83 22.663304147581634 25.66272633099756 25.98282796149117 25.691141559929637 84-85 22.54551417195137 25.507353337519724 25.937200808026876 26.009931682502025 86-87 22.54148570906089 25.493514894194202 25.973575761649293 25.99142363509561 88-89 22.381793044772945 25.484586985916348 25.900761155254404 26.232858814056303 90-91 22.23369815809463 25.56338132639348 25.930284976265856 26.272635539246036 92-93 22.332918204461574 25.413780460459733 25.871407014162862 26.381894320915826 94-95 22.117318162494325 25.31212560024734 25.96558903950763 26.6049671977507 96-97 22.229678582719153 25.19664913675475 25.87751969208871 26.696152588437382 98-99 22.06978451218507 25.263905919325 25.794676801491356 26.87163276699857 100-101 22.029091451498747 25.148845110500773 25.931327434483393 26.890736003517084 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 62.0 1 49.5 2 62.5 3 109.5 4 108.5 5 120.5 6 211.5 7 396.0 8 601.5 9 661.5 10 563.0 11 486.0 12 518.5 13 582.5 14 652.5 15 739.5 16 834.5 17 915.5 18 1019.5 19 1173.5 20 1310.5 21 1531.5 22 1857.5 23 2278.0 24 2798.0 25 3399.5 26 4219.0 27 5514.5 28 7284.5 29 10164.0 30 14641.0 31 20890.0 32 29089.5 33 36220.0 34 42745.5 35 50497.5 36 59262.5 37 67603.0 38 74242.0 39 79724.5 40 85412.5 41 92563.5 42 100874.0 43 109328.5 44 115427.0 45 121721.5 46 129034.0 47 135139.5 48 141429.0 49 147205.0 50 149195.5 51 149492.5 52 148402.0 53 145507.5 54 141338.0 55 132987.5 56 120771.5 57 108107.0 58 97299.5 59 84959.5 60 70770.0 61 58111.5 62 47944.5 63 37681.0 64 27816.0 65 21069.5 66 16190.0 67 12596.0 68 9512.0 69 6907.0 70 5394.5 71 4313.0 72 3495.5 73 2843.5 74 2130.5 75 1587.5 76 1082.0 77 614.5 78 328.0 79 152.5 80 75.5 81 40.0 82 14.5 83 8.0 84 8.0 85 8.0 86 4.5 87 1.5 88 1.0 89 1.0 90 1.5 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1951081065576493 2 0.0 3 0.011986678784182414 4 0.014371937282798059 5 0.006219787983731934 6 0.10866513084199625 7 0.14393072484684527 8 0.12566387178782673 9 0.14429304259347042 10-11 0.11636438295778093 12-13 0.11625870694834858 14-15 0.11838732370977141 16-17 0.06779870833723328 18-19 0.08090253350684327 20-21 0.037922590813433535 22-23 0.08541640876688174 24-25 0.0586954749532761 26-27 0.06740619744505602 28-29 0.041908086026310305 30-31 0.025407531982089424 32-33 0.032925625224561515 34-35 0.02080307728539467 36-37 0.02583023601981878 38-39 0.03321246010730644 40-41 0.025618884000954106 42-43 0.013269887470146529 44-45 0.027747500762376923 46-47 0.034888179685447815 48-49 0.008318211599602658 50-51 0.016002367142611284 52-53 0.00736712751471161 54-55 0.012635831413552496 56-57 0.005963146246539111 58-59 0.003985495212876773 60-61 0.0237469089767241 62-63 0.01006941404162427 64-65 0.006944423476982256 66-67 0.04121364367861208 68-69 0.09060962980184238 70-71 0.022720342027952815 72-73 0.044776434853759504 74-75 0.0872732872183357 76-77 0.2587401608086932 78-79 0.08174794158230199 80-81 0.0172553826830233 82-83 0.012243320521375237 84-85 0.014688965311095075 86-87 0.2746217553690961 88-89 0.6328483307719481 90-91 0.2706211635834433 92-93 0.35718491188130475 94-95 0.001268112113188064 96-97 0.0044383923961582245 98-99 0.0038949157762204825 100-101 0.0053743799082732234 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3312010.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.496775474972885 #Duplication Level Percentage of deduplicated Percentage of total 1 78.25177478641746 44.992247254127875 2 11.883014152458996 13.6646999337972 3 4.0600630421422235 7.003215994448604 4 1.8510705349698688 4.25722347750002 5 1.0199693126771168 2.9322473281179295 6 0.6271187014065366 2.1634381902556914 7 0.42876752563522463 1.7256925106685732 8 0.3053409330336643 1.404489525596426 9 0.22680115231708559 1.1736301439016534 >10 1.2208429354330372 12.693758172051487 >50 0.08539010257779893 3.3420015655090367 >100 0.037841280799167445 3.668204528938334 >500 0.0013194342991996962 0.4841287094161854 >1k 6.861058325736837E-4 0.49502266567100045 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.0193145552096763E-5 0.0 3 0.0 0.0 0.0 3.0193145552096763E-5 0.0 4 0.0 0.0 0.0 3.0193145552096763E-5 0.0 5 0.0 0.0 0.0 3.0193145552096763E-5 3.0193145552096763E-5 6 0.0 0.0 0.0 3.0193145552096763E-5 3.0193145552096763E-5 7 0.0 0.0 0.0 9.057943665629028E-5 3.0193145552096763E-5 8 0.0 0.0 0.0 9.057943665629028E-5 3.0193145552096763E-5 9 0.0 0.0 0.0 9.057943665629028E-5 3.0193145552096763E-5 10-11 0.0 0.0 0.0 9.057943665629028E-5 3.0193145552096763E-5 12-13 0.0 0.0 0.0 1.2077258220838705E-4 1.509657277604838E-4 14-15 0.0 0.0 0.0 1.660623005365322E-4 2.415451644167741E-4 16-17 0.0 0.0 0.0 1.8115887331258057E-4 3.0193145552096765E-4 18-19 0.0 0.0 0.0 2.5664173719282246E-4 3.6231774662516113E-4 20-21 0.0 0.0 0.0 3.6231774662516113E-4 4.0760746495330626E-4 22-23 0.0 0.0 0.0 5.283800471616933E-4 4.5289718328145144E-4 24-25 0.0 1.5096572776048382E-5 0.0 8.001183571305642E-4 4.5289718328145144E-4 26-27 0.0 3.0193145552096763E-5 0.0 0.001781395587573709 4.830903288335482E-4 28-29 0.0 3.0193145552096763E-5 0.0 0.007291644650831368 4.830903288335482E-4 30-31 0.0 3.0193145552096763E-5 0.0 0.03226137602241539 4.830903288335482E-4 32-33 0.0 3.0193145552096763E-5 0.0 0.08783186041104948 4.830903288335482E-4 34-35 0.0 3.0193145552096763E-5 0.0 0.16385820091122913 5.434766199377418E-4 36-37 0.0 4.528971832814514E-5 0.0 0.28349854016141257 5.434766199377418E-4 38-39 0.0 6.0386291104193526E-5 0.0 0.48724188634696153 5.434766199377418E-4 40-41 0.0 6.0386291104193526E-5 0.0 0.7216010821223366 5.434766199377418E-4 42-43 0.0 6.0386291104193526E-5 0.0 0.9706945329271349 5.434766199377418E-4 44-45 0.0 6.0386291104193526E-5 0.0 1.2676894091503348 5.434766199377418E-4 46-47 0.0 6.0386291104193526E-5 0.0 1.6163900471315 5.434766199377418E-4 48-49 0.0 6.0386291104193526E-5 0.0 1.985848472679732 5.434766199377418E-4 50-51 0.0 6.0386291104193526E-5 0.0 2.3974263362731394 5.434766199377418E-4 52-53 0.0 6.0386291104193526E-5 0.0 2.819058517335394 5.434766199377418E-4 54-55 0.0 6.0386291104193526E-5 0.0 3.28756555686728 5.434766199377418E-4 56-57 0.0 6.0386291104193526E-5 0.0 3.8296683886824012 5.585731927137902E-4 58-59 0.0 6.0386291104193526E-5 0.0 4.399337562386587 6.038629110419353E-4 60-61 0.0 6.0386291104193526E-5 0.0 4.999547102816718 6.038629110419353E-4 62-63 0.0 6.0386291104193526E-5 0.0 5.616045845272206 6.038629110419353E-4 64-65 0.0 6.0386291104193526E-5 0.0 6.270603047696111 6.038629110419353E-4 66-67 0.0 1.2077258220838705E-4 0.0 7.011180521797941 6.038629110419353E-4 68-69 0.0 1.3586915498443544E-4 0.0 7.81785079151331 6.038629110419353E-4 70-71 0.0 1.8115887331258057E-4 0.0 8.664345820211896 6.038629110419353E-4 72-73 0.0 2.1135201886467734E-4 0.0 9.523537066615138 6.491526293700804E-4 74-75 0.0 2.1135201886467734E-4 0.0 10.403667259458757 7.095389204742739E-4 76-77 0.0 2.1135201886467734E-4 0.0 11.359340702473725 7.246354932503223E-4 78-79 0.0 2.1135201886467734E-4 0.0 12.37369452386919 7.548286388024191E-4 80-81 0.0 2.2644859164072572E-4 0.0 13.433715477912205 7.548286388024191E-4 82-83 0.0 2.415451644167741E-4 0.0 14.500167571957814 7.699252115784675E-4 84-85 0.0 2.415451644167741E-4 0.0 15.571420376146207 7.850217843545158E-4 86-87 0.0 2.415451644167741E-4 0.0 16.679493721335383 8.152149299066125E-4 88-89 0.0 2.415451644167741E-4 0.0 17.84944791833358 8.454080754587093E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2675 0.0 49.240204 1 GTATCAA 5105 0.0 44.151604 1 TCAACGC 6495 0.0 33.46892 4 ATCAACG 6610 0.0 33.030243 3 CAACGCA 6695 0.0 32.393803 5 AACGCAG 7075 0.0 30.922695 6 TATCAAC 7295 0.0 30.448744 2 GTACATG 10120 0.0 26.829926 1 ACGCAGA 8565 0.0 25.209673 7 TACATGG 10600 0.0 24.760994 2 CGCAGAG 8835 0.0 24.38444 8 ACATGGG 10715 0.0 24.052658 3 GAGTACA 8185 0.0 21.321182 1 CATGGGG 7410 0.0 21.201431 4 TAAGGTG 1145 0.0 20.308922 5 GCAGAGT 10230 0.0 19.71409 9 AGTACAT 8120 0.0 19.581125 2 AGAGTAC 8795 0.0 18.855812 10-11 GTATAGA 810 0.0 18.78576 1 GTGGTAT 1695 0.0 17.112915 1 >>END_MODULE