FastQCFastQC Report
Mon 15 Aug 2016
SRR2920852_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920852_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3382621
Sequences flagged as poor quality0
Sequence length101
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA29350.042.2986371
GTATCAA50100.041.0147441
ATCAACG63550.031.7447973
TCAACGC63250.031.670224
CAACGCA63800.031.3930195
TATCAAC66350.030.3309152
AACGCAG68250.029.485236
GTACATG95550.024.9900461
ACGCAGA80200.024.7955957
TACATGG97900.023.8532
CGCAGAG84750.023.3513458
ACATGGG100150.021.9920753
TAAGGCG7650.019.8531685
GCAGAGT98650.019.0986469
CATGGGG74450.018.553574
GAGTACA76500.018.5288661
AGAGTAC81650.017.87077510-11
AGTACAT74400.017.4160752
GTGTAAG15900.017.3510131
CAGAGTA88350.016.59611510-11
Produced by FastQC (version 0.11.5)