##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920850_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3999666 Sequences flagged as poor quality 0 Sequence length 98 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.674550324952133 31.0 30.0 33.0 22.0 34.0 2 28.703035203439487 31.0 28.0 34.0 20.0 34.0 3 28.775487003164763 31.0 28.0 34.0 22.0 34.0 4 32.26424756467165 35.0 32.0 37.0 23.0 37.0 5 32.2365162491068 35.0 32.0 37.0 23.0 37.0 6 32.359534271111634 35.0 33.0 37.0 24.0 37.0 7 32.1953065580976 35.0 32.0 37.0 23.0 37.0 8 32.136660911186084 35.0 32.0 37.0 22.0 37.0 9 33.406195667338224 37.0 33.0 39.0 22.0 39.0 10-11 33.21550686982363 37.0 32.5 39.0 20.5 39.0 12-13 33.04392241752187 37.0 32.0 39.0 18.5 39.0 14-15 33.807132645575905 38.0 32.5 40.0 18.0 41.0 16-17 33.69989931659293 38.0 32.0 40.0 17.5 41.0 18-19 33.5841115233122 38.0 32.0 40.0 17.5 41.0 20-21 33.49235286146393 38.0 32.0 40.0 18.0 41.0 22-23 33.271948707717094 38.0 32.0 40.0 16.5 41.0 24-25 33.07856093483806 38.0 32.0 40.0 15.5 41.0 26-27 33.11106777415914 38.0 32.0 40.0 14.0 41.0 28-29 32.955805059722486 38.0 32.0 40.0 10.0 41.0 30-31 32.70856153988858 38.0 31.0 40.0 9.5 41.0 32-33 32.465935405606366 37.5 31.0 40.0 9.0 41.0 34-35 32.1422381268836 37.0 30.5 40.0 8.0 41.0 36-37 31.833967261266316 37.0 30.0 40.0 6.5 41.0 38-39 31.63641789089389 37.0 30.0 40.0 2.0 41.0 40-41 31.44397194665755 37.0 30.0 40.0 2.0 41.0 42-43 31.207379941225092 36.5 30.0 40.0 2.0 41.0 44-45 30.931904439020656 36.0 29.0 39.5 2.0 41.0 46-47 30.681695671588578 36.0 28.5 39.0 2.0 40.5 48-49 30.38475025164601 36.0 28.0 39.0 2.0 40.0 50-51 29.241490664470483 34.0 26.5 38.0 2.0 39.5 52-53 29.684656418810974 34.5 27.5 38.5 2.0 39.5 54-55 30.33860239830026 36.0 28.0 39.0 2.0 40.0 56-57 30.285153435311848 35.5 28.0 39.0 2.0 41.0 58-59 30.045989715141214 35.0 28.0 39.0 2.0 41.0 60-61 29.717983326607772 35.0 28.0 39.0 2.0 40.0 62-63 29.32735720932698 35.0 27.0 39.0 2.0 40.0 64-65 28.905923394603448 34.0 26.0 38.0 2.0 40.0 66-67 28.521850074481222 34.0 26.0 38.0 2.0 40.0 68-69 28.073527389537027 34.0 26.0 37.0 2.0 39.5 70-71 27.74206746263313 34.0 25.5 36.5 2.0 39.0 72-73 27.281490504457125 33.0 24.5 36.0 2.0 39.0 74-75 26.845277830698862 33.0 23.5 35.5 2.0 38.5 76-77 26.42485522541132 33.0 22.5 35.0 2.0 37.5 78-79 25.9620944598874 32.0 20.5 35.0 2.0 37.0 80-81 25.50999695974614 32.0 19.5 35.0 2.0 36.5 82-83 25.034813656940354 32.0 18.0 35.0 2.0 36.0 84-85 24.63491851569606 31.5 13.0 35.0 2.0 35.5 86-87 24.17853628277961 31.0 7.0 34.0 2.0 35.0 88-89 23.639287005464958 31.0 2.0 34.0 2.0 35.0 90-91 23.14833701114043 31.0 2.0 34.0 2.0 35.0 92-93 22.610670991027753 30.5 2.0 34.0 2.0 35.0 94-95 21.972010287859035 30.0 2.0 34.0 2.0 35.0 96-97 21.326563018012003 29.5 2.0 34.0 2.0 35.0 98 20.930378436599455 29.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 195774.0 3 34871.0 4 25790.0 5 20947.0 6 19190.0 7 19956.0 8 22771.0 9 26004.0 10 28437.0 11 30360.0 12 31798.0 13 31455.0 14 29721.0 15 31005.0 16 32847.0 17 35350.0 18 36778.0 19 36459.0 20 38219.0 21 40129.0 22 43758.0 23 49080.0 24 55867.0 25 63978.0 26 74073.0 27 84966.0 28 98470.0 29 115195.0 30 133483.0 31 156886.0 32 187357.0 33 226463.0 34 282357.0 35 357746.0 36 456253.0 37 506930.0 38 307593.0 39 31346.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.94836694912382 18.023946308455262 13.302690225543149 24.724996516877766 2 15.941257337268382 19.52076642959161 39.236101298631795 25.301874934508213 3 19.138460799786337 23.639037591623378 29.039299617414336 28.18320199117595 4 13.342995828672755 15.681399721478071 36.46584230377495 34.50976214607422 5 14.59405861360982 36.71533211794745 34.06776651586878 14.622842752573941 6 33.572449424883494 34.850072084936436 17.345648833199334 14.231829656980736 7 29.410782123016787 31.403898512251864 20.878485565622356 18.30683379910899 8 26.917905754711203 34.04582614968575 20.030105682447562 19.006162413155483 9 26.91169712671008 15.793993798482173 19.444323601020685 37.849985473787065 10-11 25.704215228025344 25.201110593012167 27.596936243410386 21.497737935552102 12-13 26.346254196515574 22.542117676709967 27.40520006630913 23.706428060465328 14-15 23.511669949765277 24.11472913842633 24.85721740171863 27.516383510089764 16-17 23.720896099710433 27.018110871548657 25.693594147752886 23.567398880988023 18-19 23.705715357986946 26.30294482481857 26.95641658268061 23.034923234513872 20-21 24.42624411155479 25.615506109770177 26.711546382156275 23.246703396518758 22-23 24.12866009187325 25.349674086344937 26.591798731283696 23.929867090498117 24-25 23.952164272691164 25.547430737331943 26.556234187408723 23.94417080256817 26-27 23.71841538688465 25.803102753840097 26.482977240474998 23.995504618800258 28-29 23.81672800958138 25.927482980859136 26.37579388780657 23.879995121752916 30-31 24.006877787440743 25.72484872757555 26.231214383266167 24.037059101717535 32-33 23.789429776498956 25.786094791010743 26.08738382191938 24.337091610570923 34-35 24.19621171062668 25.81465283632422 26.124794251073908 23.86434120197519 36-37 24.343953532715503 25.450544295745146 26.171998385595955 24.033503785943395 38-39 24.081773568094427 25.657862832455447 26.080784075858727 24.1795795235914 40-41 24.252385168045446 25.500497676963047 26.260318849983 23.98679830500851 42-43 24.134503110511897 25.466928410631272 26.0600592892275 24.338509189629335 44-45 23.99588462125145 25.547374876730096 26.242745828910476 24.213994673107983 46-47 24.18986264951698 25.52654533730991 26.02783116200286 24.25576085117025 48-49 23.994147759653934 25.57785538363431 25.98849134717016 24.439505509541586 50-51 23.963102519473406 25.76291287548142 26.108974247932533 24.16501035711264 52-53 24.10081385531076 25.50409062967335 26.197087283765125 24.198008231250768 54-55 23.65009680050254 25.445663534692365 26.487476352553546 24.41676331225155 56-57 23.711489076687144 25.607920492702746 26.319331842159226 24.361258588450887 58-59 23.727756813053965 25.282778949366648 26.407315937404384 24.582148300175007 60-61 23.611493049146322 25.30350575167289 26.6203443846319 24.46465681454889 62-63 23.618538369177507 25.382253053329123 26.5971066878717 24.40210188962167 64-65 23.47574351822579 25.27035627604507 26.489809191529318 24.76409101419982 66-67 23.419671855990117 25.34508942323783 26.497674025927687 24.737564694844362 68-69 23.644379745560787 25.19295511523317 26.433849458158708 24.72881568104734 70-71 23.386945057907464 25.11757384659156 26.507965453187516 24.987515642313458 72-73 23.40448145717943 25.191246894743717 26.503432173247106 24.90083947482975 74-75 23.465747044987257 25.413322888181504 26.388365432435812 24.73256463439543 76-77 23.509677788447377 25.142640708010788 26.503846701040786 24.843834802501053 78-79 23.466339774203824 25.199386712804973 26.488853024727575 24.845420488263624 80-81 23.58519023781578 25.257765721732728 26.39331516895905 24.763728871492447 82-83 23.574452441178835 25.22475758853288 26.472674757086644 24.728115213201637 84-85 23.475096655099296 25.280002730295603 26.453038601938083 24.791862012667014 86-87 23.558261258366752 25.252657043679555 26.408261063911443 24.78082063404225 88-89 23.496041388450994 25.09570200716918 26.39591888988182 25.012337714498006 90-91 23.44224403392051 25.184685577760433 26.44974037609703 24.923330012222024 92-93 23.64642648864103 25.013939620240077 26.458867204477542 24.88076668664135 94-95 23.559540707339206 24.934889036563526 26.54756801956265 24.958002236534615 96-97 23.79063389917918 24.71213635510952 26.50062080548492 24.996608940226377 98 23.8252832304203 24.69656841119441 26.324581835811927 25.15356652257336 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 55.0 1 54.5 2 93.5 3 152.5 4 172.0 5 201.0 6 319.5 7 628.5 8 987.0 9 1132.5 10 1149.5 11 1250.0 12 1448.0 13 1638.5 14 1832.5 15 2033.5 16 2210.0 17 2304.0 18 2366.0 19 2406.5 20 2397.5 21 2501.0 22 2684.5 23 2990.5 24 3550.5 25 4354.0 26 5526.0 27 7336.0 28 9987.0 29 13764.5 30 19484.5 31 27913.5 32 36297.0 33 44128.5 34 53483.0 35 64252.0 36 76157.0 37 87740.5 38 98224.5 39 107821.5 40 117979.5 41 127300.0 42 136820.0 43 146813.0 44 156088.0 45 164393.0 46 171399.0 47 176849.5 48 179622.5 49 179793.5 50 178893.0 51 177685.0 52 174968.0 53 172292.5 54 166844.0 55 158586.5 56 145803.5 57 131221.0 58 119588.5 59 103729.5 60 86367.5 61 72066.0 62 59498.5 63 46144.0 64 33663.0 65 25266.5 66 19112.0 67 14531.0 68 10841.5 69 8127.0 70 5988.5 71 4463.5 72 3526.0 73 2710.0 74 2098.5 75 1636.0 76 1143.5 77 674.5 78 394.0 79 227.0 80 129.0 81 92.0 82 54.5 83 28.0 84 25.0 85 19.5 86 12.0 87 8.0 88 8.5 89 6.0 90 3.5 91 4.5 92 4.5 93 5.0 94 3.0 95 1.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.40430875978144176 2 0.026827240074546226 3 0.020576718155966022 4 0.01747645928435024 5 0.023401954063164275 6 0.022776901871306255 7 0.015051256779941125 8 0.01052587891088906 9 0.0 10-11 2.5002087674320805E-5 12-13 0.005425453025327615 14-15 0.0035377954059163945 16-17 0.006125511480208598 18-19 0.037065594977180594 20-21 0.08200684757177225 22-23 0.10132096030018506 24-25 0.06634303964381026 26-27 0.07799401250004376 28-29 0.05821736114965599 30-31 0.05399200833269578 32-33 0.021201770347824042 34-35 0.3556796992548878 36-37 0.5432328599438053 38-39 0.496216434072245 40-41 0.5044671230047709 42-43 0.4542129267793861 44-45 0.42612308127728665 46-47 0.42523550716484826 48-49 0.4144346052895416 50-51 0.41035926499862735 52-53 0.47461463032163187 54-55 0.4764522837656944 56-57 0.44484964494535295 58-59 0.42959837146401725 60-61 0.44456212093709824 62-63 0.42413541530717813 64-65 0.4737020541215191 66-67 0.49574139440643294 68-69 0.43647394557445546 70-71 0.3920452357771874 72-73 0.3773190061370124 74-75 0.36013007086091686 76-77 0.3576048600058105 78-79 0.3564672650166289 80-81 0.3736061961173758 82-83 0.36768070133856173 84-85 0.3687682921523947 86-87 0.35439209173966024 88-89 0.3986832900547196 90-91 0.376431432024574 92-93 0.3655805259739188 94-95 0.37328116897760966 96-97 0.37311865540772654 98 0.36873078902088324 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3999666.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.466870906920924 #Duplication Level Percentage of deduplicated Percentage of total 1 78.33809677384565 46.58521487944158 2 11.651073255436316 13.857057384162205 3 4.172090501373014 7.443035017714202 4 1.8821180123775223 4.476946754945789 5 1.0789527395547527 3.208097163888558 6 0.651739528173528 2.3254146232099644 7 0.44862558886076054 1.867485198482696 8 0.30358057773977615 1.4442389621039793 9 0.22478503467466743 1.2030536374925576 >10 1.1704944220088838 12.266934579429993 >50 0.0578436165174269 2.3436165833888403 >100 0.018826037103116887 1.8505243903815791 >500 9.71428203484843E-4 0.40786574916671353 >1k 8.024841311322027E-4 0.7205150761913419 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.5002087674320805E-5 2 0.0 0.0 0.0 0.0 2.5002087674320805E-5 3 0.0 2.5002087674320805E-5 0.0 0.0 2.5002087674320805E-5 4 0.0 2.5002087674320805E-5 0.0 0.0 2.5002087674320805E-5 5 0.0 5.000417534864161E-5 0.0 0.0 2.5002087674320805E-5 6 0.0 5.000417534864161E-5 0.0 0.0 7.500626302296241E-5 7 0.0 5.000417534864161E-5 0.0 0.0 7.500626302296241E-5 8 0.0 5.000417534864161E-5 0.0 0.0 7.500626302296241E-5 9 0.0 5.000417534864161E-5 0.0 0.0 7.500626302296241E-5 10-11 0.0 5.000417534864161E-5 0.0 5.000417534864161E-5 7.500626302296241E-5 12-13 0.0 7.500626302296241E-5 0.0 7.500626302296241E-5 4.375365343006141E-4 14-15 0.0 1.2501043837160402E-4 0.0 7.500626302296241E-5 5.125427973235765E-4 16-17 0.0 1.6251356988308523E-4 0.0 1.1250939453444364E-4 6.250521918580201E-4 18-19 0.0 1.7501461372024563E-4 0.0 1.5001252604592482E-4 6.500542795323409E-4 20-21 0.0 2.7502296441752884E-4 0.0 1.8751565755740604E-4 6.875574110438221E-4 22-23 0.0 3.0002505209184965E-4 0.0 3.1252609592901005E-4 7.375615863924637E-4 24-25 0.0 3.1252609592901005E-4 0.0 5.375448849978973E-4 7.625636740667846E-4 26-27 0.0 3.2502713976617046E-4 0.0 0.001150096033018757 8.000668055782658E-4 28-29 0.0 3.5002922744049126E-4 0.0 0.00433786221149466 8.250688932525866E-4 30-31 0.0 3.750313151148121E-4 0.0 0.020376701454571457 8.37569937089747E-4 32-33 0.0 4.125344466262933E-4 0.0 0.057654814176983774 0.0010000835069728323 34-35 0.0 4.500375781377745E-4 0.0 0.10810902710376316 0.0010000835069728323 36-37 0.0 5.250438411607369E-4 0.0 0.19217854690866687 0.0010000835069728323 38-39 0.0 6.125511480208597E-4 0.0 0.33674061784158976 0.0010500876823214737 40-41 0.0 6.500542795323409E-4 0.0 0.505954747221393 0.0010500876823214737 42-43 0.0 7.000584548809825E-4 0.0 0.6868823546766155 0.0010625887261586343 44-45 0.0 7.000584548809825E-4 0.0 0.9062006677557576 0.0011000918576701154 46-47 0.0 7.125594987181429E-4 0.0 1.16958516036089 0.0011750981206930778 48-49 0.0 7.250605425553033E-4 0.0 1.4511711727929282 0.0012626054275532007 50-51 0.0 7.375615863924637E-4 0.0 1.7582843167404478 0.0013001085590646818 52-53 0.0 8.000668055782658E-4 0.0 2.0738106631903763 0.001337611690576163 54-55 0.0 8.37569937089747E-4 0.0 2.4288028050342203 0.0014251189974362859 56-57 0.0 8.500709809269074E-4 0.0 2.835486763144723 0.0014501210851106067 58-59 0.0 8.750730686012282E-4 0.0 3.2681603913926813 0.0015001252604592483 60-61 0.0 9.00075156275549E-4 0.0 3.7425250008375697 0.0015376283919707294 62-63 0.0 9.00075156275549E-4 0.0 4.227002954746721 0.0016001336111565315 64-65 0.0 9.250772439498698E-4 0.0 4.743158553739237 0.0016001336111565315 66-67 0.0 9.250772439498698E-4 0.0 5.338145735168887 0.0016251356988308523 68-69 0.0 9.250772439498698E-4 0.0 5.977349108650572 0.0016501377865051731 70-71 2.5002087674320805E-5 9.500793316241906E-4 0.0 6.6536430791971135 0.0017001419618538148 72-73 2.5002087674320805E-5 9.750814192985114E-4 0.0 7.3581269035964505 0.0017876492687139375 74-75 2.5002087674320805E-5 9.750814192985114E-4 0.0 8.080949759304902 0.0018251524002254188 76-77 2.5002087674320805E-5 9.750814192985114E-4 0.0 8.865827796621017 0.0018251524002254188 78-79 2.5002087674320805E-5 9.750814192985114E-4 0.0 9.729987453952404 0.0018876576194112207 80-81 2.5002087674320805E-5 9.875824631356718E-4 0.0 10.621399386848802 0.001925160750922702 82-83 2.5002087674320805E-5 0.0010000835069728323 0.0 11.537425875060567 0.0020376701454571456 84-85 2.5002087674320805E-5 0.0010000835069728323 0.0 12.46209058456381 0.002050171189294306 86 2.5002087674320805E-5 0.0010000835069728323 0.0 13.17057474299104 0.002075173276968627 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5840 0.0 45.86811 1 GGTATCA 3010 0.0 42.96754 1 TCAACGC 7595 0.0 34.77508 4 CAACGCA 7745 0.0 33.80556 5 TATCAAC 7905 0.0 33.41344 2 ATCAACG 7900 0.0 33.37446 3 AACGCAG 8140 0.0 32.046844 6 ACGCAGA 9855 0.0 26.23505 7 GTACATG 12650 0.0 24.995792 1 CGCAGAG 10440 0.0 24.499685 8 TACATGG 12985 0.0 23.73165 2 ACATGGG 13390 0.0 22.738455 3 GCAGAGT 11415 0.0 21.202654 9 CATGGGG 9550 0.0 20.165983 4 AGAGTAC 9800 0.0 18.639627 10-11 TAAGGCG 1280 0.0 18.269794 5 GAGTACA 9730 0.0 17.927803 1 GTATTAA 2340 0.0 17.308823 1 AGTACAT 9625 0.0 17.246798 2 TATTAAG 1985 0.0 16.402063 2 >>END_MODULE