##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920849_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4688964 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.306550018298285 31.0 30.0 34.0 27.0 34.0 2 30.324138978247646 31.0 30.0 34.0 26.0 34.0 3 30.463238361394968 31.0 30.0 34.0 27.0 34.0 4 34.106278700369636 35.0 35.0 37.0 30.0 37.0 5 33.633999109398154 35.0 35.0 37.0 28.0 37.0 6 33.572092470746206 35.0 35.0 37.0 28.0 37.0 7 33.38962337949278 35.0 35.0 37.0 27.0 37.0 8 33.32140468555527 35.0 35.0 37.0 27.0 37.0 9 34.663140727887864 38.0 35.0 39.0 27.0 39.0 10-11 34.47256419541715 38.0 34.0 39.0 27.0 39.0 12-13 34.28358140518887 37.0 34.0 39.0 27.0 39.0 14-15 35.18372022050073 38.0 34.0 40.0 26.0 41.0 16-17 35.05225738563998 38.0 34.0 40.0 25.5 41.0 18-19 34.95995746608419 38.5 34.0 40.0 25.0 41.0 20-21 34.841034288171116 38.0 34.0 40.0 25.0 41.0 22-23 34.696530086390084 38.0 34.0 40.0 24.5 41.0 24-25 34.51196714242208 38.0 33.0 40.0 24.0 41.0 26-27 34.32574178432592 38.0 33.0 40.0 23.5 41.0 28-29 34.272852489377186 38.0 33.0 40.0 23.5 41.0 30-31 34.26916041581893 38.0 33.0 40.0 23.0 41.0 32-33 34.125569635424796 38.0 33.0 40.0 22.5 41.0 34-35 33.95883077797142 38.0 33.0 40.0 21.5 41.0 36-37 33.77092263877479 38.0 33.0 40.0 20.0 41.0 38-39 33.59343791080503 38.0 32.5 40.0 18.5 41.0 40-41 33.3583979318246 38.0 32.0 40.0 17.5 41.0 42-43 33.394275046684086 38.0 32.0 40.0 17.5 41.0 44-45 33.25667535515308 38.0 32.0 40.0 15.5 41.0 46-47 33.01377980295861 38.0 32.0 40.0 15.0 41.0 48-49 32.75717866462613 37.0 31.0 40.0 12.5 41.0 50-51 32.50020932129144 37.0 31.0 40.0 9.0 41.0 52-53 32.2356324339449 37.0 31.0 40.0 8.5 41.0 54-55 31.952626955549242 36.5 30.5 40.0 7.5 41.0 56-57 31.626897327426697 36.0 30.0 39.0 6.5 41.0 58-59 31.292216468285957 36.0 29.5 39.0 2.0 40.5 60-61 30.960889441676244 35.0 29.0 39.0 2.0 40.0 62-63 30.632739022948353 35.0 29.0 39.0 2.0 40.0 64-65 30.233301855164594 35.0 28.0 38.0 2.0 40.0 66-67 29.806470043276086 34.0 28.0 38.0 2.0 40.0 68-69 29.359163666003834 34.0 28.0 37.0 2.0 39.5 70-71 28.9296342432998 34.0 27.0 36.5 2.0 39.0 72-73 28.482695431229587 34.0 26.0 36.0 2.0 39.0 74-75 28.038055741097608 33.0 26.0 35.5 2.0 38.5 76-77 26.587493740621596 31.5 24.5 34.5 2.0 36.0 78-79 27.428081128368653 33.0 26.0 35.0 2.0 37.0 80-81 27.456422783369632 33.0 26.0 35.0 2.0 36.5 82-83 27.11786889385374 33.0 26.0 35.0 2.0 36.0 84-85 26.797743915287043 33.0 25.0 35.0 2.0 36.0 86-87 26.258552742140907 32.5 24.0 35.0 2.0 35.0 88-89 25.890312870817517 32.0 23.5 35.0 2.0 35.0 90-91 25.522869230815164 32.0 21.0 35.0 2.0 35.0 92-93 25.203870513827788 32.0 20.0 34.0 2.0 35.0 94-95 24.817772220046905 32.0 18.0 34.0 2.0 35.0 96-97 24.282929662074608 32.0 6.5 34.0 2.0 35.0 98-99 23.68270976275356 31.5 2.0 34.0 2.0 35.0 100-101 21.462657316200335 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 105712.0 3 49951.0 4 27308.0 5 19235.0 6 16438.0 7 16221.0 8 18301.0 9 21216.0 10 24034.0 11 26752.0 12 29283.0 13 32526.0 14 35092.0 15 36745.0 16 39421.0 17 40029.0 18 39513.0 19 38487.0 20 38863.0 21 40378.0 22 43683.0 23 48966.0 24 57703.0 25 67634.0 26 80345.0 27 95613.0 28 112963.0 29 132850.0 30 156696.0 31 185572.0 32 222215.0 33 271832.0 34 343601.0 35 442702.0 36 589142.0 37 700543.0 38 410994.0 39 30405.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.644316119762486 18.945697632973747 13.468065702009232 24.941920545254536 2 16.112237159423703 20.427092210560797 38.23426667383243 25.22640395618307 3 19.432190207279625 24.31472905154657 28.90015167217992 27.352929068993888 4 14.00519590214811 16.164353466387674 35.80249599535867 34.02795463610555 5 14.692199165434083 37.041076724398096 33.827240803085736 14.43948330708208 6 33.91657025519453 34.87758216040122 17.059247633978142 14.146599950426106 7 29.674362658747988 31.260817416531832 20.745434260007553 18.319385664712627 8 27.04835823215684 34.63433716558054 19.7361478474011 18.58115675486152 9 27.093265286683106 15.68480128689497 19.172056849251582 38.049876577170345 10-11 26.040703872399906 25.24962993471094 27.318109681095848 21.391556511793304 12-13 26.45142356546531 22.349904143367958 27.472591878352286 23.726080412814447 14-15 23.623993586883728 23.995764729846197 24.705326210922472 27.6749154723476 16-17 24.03078408724114 27.00135780766081 25.39021364796769 23.577644457130358 18-19 23.9958456735157 26.415371605613892 26.648401489273965 22.940381231596444 20-21 24.525730875439773 25.61816515203995 26.539005856006685 23.317098116513595 22-23 24.24689948755953 25.325344629449702 26.423330726449677 24.00442515654109 24-25 24.035529379756255 25.53183907218172 26.398787946684592 24.03384360137743 26-27 23.862049876629417 25.797715350066436 26.351581196453516 23.988653576850634 28-29 23.866478419793015 26.07142038026651 26.207282423114897 23.854818776825578 30-31 24.312772248081195 25.714500556761994 26.118483644849842 23.85424355030697 32-33 23.99872682517281 25.75916622408837 26.01959319632268 24.222513754416138 34-35 24.26450543613897 25.857773028133114 26.11481910466354 23.762902431064383 36-37 24.312394974452562 25.646877378157036 26.16286045994457 23.877867187445837 38-39 24.192933501441075 25.765476899052153 26.099377702683963 23.94221189682281 40-41 24.359574798730364 25.547007249770605 26.160759511357508 23.93265844014153 42-43 24.128195606514957 25.563785646595143 26.038952714931114 24.269066031958786 44-45 23.937138958215762 25.565078156590072 26.261021710584632 24.236761174609537 46-47 24.02635193903994 25.526160894842064 26.112083102839378 24.335404063278617 48-49 23.94519478007133 25.644212905469445 26.102224118575297 24.308368195883933 50-51 23.945621326575992 25.706699856129227 26.214854844093775 24.132823973201 52-53 24.12581778542603 25.50788835216763 26.15133534606471 24.214958516341632 54-55 23.64481491178442 25.40496728875532 26.421482081468568 24.52873571799169 56-57 23.692859194126008 25.532704926520168 26.212717693288525 24.561718186065303 58-59 23.73242873788909 25.423938472950276 26.267064735866825 24.576568053293812 60-61 23.832377519829546 25.435710276144402 26.403629435536214 24.328282768489842 62-63 23.724855433137506 25.438435589469353 26.318602073845554 24.518106903547583 64-65 23.45250591298656 25.275163558236375 26.340967455139523 24.931363073637545 66-67 23.479309170287696 25.387935388888007 26.218258946892085 24.914496493932216 68-69 23.513180837199315 25.32856170558476 26.21350291246676 24.944754544749166 70-71 23.381540925791835 25.150585399239688 26.264706707370987 25.20316696759749 72-73 23.344559036609347 25.352394554737355 26.081197594211737 25.221848814441554 74-75 23.26139122000698 25.371766969965787 26.077904358747332 25.288937451279892 76-77 23.19986922543762 25.029323244847035 26.31016984977069 25.460637679944654 78-79 23.079334117152634 25.03571635531069 26.34220873334922 25.54274079418746 80-81 23.12646898282558 25.147279559523255 26.16459049360809 25.561660964043075 82-83 23.088862447921016 25.091664451106944 26.253332271144416 25.56614082982763 84-85 22.96284012208882 25.080336746729685 26.11783576025032 25.83898737093117 86-87 22.765327571681784 25.155160524917054 26.19149222590838 25.888019677492785 88-89 22.710959992883563 24.898063334809486 26.25666804052293 26.134308631784027 90-91 22.71414282728245 24.799388862129927 26.249782824737828 26.236685485849797 92-93 22.785101489696938 24.69826606518917 26.215603487131283 26.30102895798261 94-95 22.553475999980808 24.599605131477993 26.26787398543689 26.57904488310431 96-97 22.397414847437247 24.438886016189088 26.38611083000242 26.777588306371246 98-99 22.222076485390666 24.371744514661163 26.338285328687384 27.06789367126079 100-101 22.372164347100018 24.2668864843076 26.391798640784774 26.969150527807606 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 61.0 1 53.5 2 63.5 3 105.5 4 110.0 5 111.0 6 194.0 7 375.0 8 572.5 9 620.5 10 527.5 11 473.5 12 504.0 13 552.5 14 624.5 15 747.0 16 843.0 17 922.5 18 1039.0 19 1185.5 20 1361.5 21 1574.5 22 1897.5 23 2336.5 24 2857.5 25 3629.0 26 4720.5 27 6234.0 28 8562.5 29 12281.0 30 17808.0 31 25484.5 32 35438.0 33 44545.0 34 53411.0 35 64264.5 36 77069.0 37 89591.0 38 100758.0 39 111607.5 40 121643.0 41 131690.0 42 142662.0 43 155029.5 44 166775.0 45 177647.0 46 187495.0 47 195851.0 48 204583.0 49 211175.5 50 212713.5 51 211801.0 52 210184.0 53 208805.0 54 203594.0 55 191632.5 56 176983.5 57 159941.0 58 142531.5 59 123884.0 60 103999.0 61 85970.5 62 70006.0 63 54216.0 64 39953.0 65 29806.5 66 22376.0 67 17261.5 68 13312.5 69 10176.5 70 7785.0 71 5966.5 72 4481.0 73 3557.0 74 2835.0 75 2080.0 76 1420.5 77 872.0 78 530.0 79 297.5 80 156.5 81 82.5 82 46.5 83 30.0 84 16.0 85 10.0 86 6.5 87 4.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19552293427716655 2 0.0 3 0.0120069166664534 4 0.013947643871865938 5 0.006376675103498342 6 0.10763571654634158 7 0.14288870633257156 8 0.12392929440277213 9 0.14259013291635425 10-11 0.11369249156103566 12-13 0.11531331867764394 14-15 0.11596378219154593 16-17 0.06614467502842845 18-19 0.07950583540415324 20-21 0.03679917354878391 22-23 0.08385647661189125 24-25 0.05761400599364806 26-27 0.06572880491298291 28-29 0.03959296765767449 30-31 0.024397713439471915 32-33 0.03133954536652446 34-35 0.019066045292734174 36-37 0.023811229943330764 38-39 0.031862048844904754 40-41 0.024749603537156606 42-43 0.01307325029580095 44-45 0.026178490600482322 46-47 0.03341889594375218 48-49 0.009223785893856298 50-51 0.015547144315887263 52-53 0.006621931838248278 54-55 0.012614726835181504 56-57 0.004873144686118299 58-59 0.003508237640553436 60-61 0.022872856349504922 62-63 0.010151496151388665 64-65 0.007325712033617661 66-67 0.03999817443682656 68-69 0.08934809480303112 70-71 0.02152927597652701 72-73 0.044807339105184 74-75 0.08615975725128194 76-77 0.26047331564072573 78-79 0.08073211907790293 80-81 0.016442864564539205 82-83 0.011356453152551394 84-85 0.012241510064909861 86-87 0.27209635220061407 88-89 0.6255219703115656 90-91 0.26533579699055054 92-93 0.3512502975070826 94-95 0.001311590364097485 96-97 0.004020077782640259 98-99 0.0031350208702817938 100-101 0.004883808022411774 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4688964.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.05405934437525 #Duplication Level Percentage of deduplicated Percentage of total 1 75.34198179215323 41.47881936708043 2 12.999117964828697 14.313084237204269 3 4.725528281813769 7.804785433814965 4 2.2229271744203216 4.895246583150432 5 1.1992570052160025 3.301198316715977 6 0.7765647952299847 2.565182659280651 7 0.5093941176614423 1.9630949788386098 8 0.3794372124185534 1.6711647047964282 9 0.27876668354842016 1.3812513785378457 >10 1.4528832142039312 14.306041397811914 >50 0.08621741910987878 3.2226293165160023 >100 0.026447798365842396 2.4098990401134257 >500 0.0010102654251593977 0.35489326616515604 >1k 4.6627560475622285E-4 0.3327093199739723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1326672586950976E-5 2 0.0 0.0 0.0 2.1326672586950976E-5 2.1326672586950976E-5 3 0.0 0.0 0.0 2.1326672586950976E-5 2.1326672586950976E-5 4 0.0 0.0 0.0 2.1326672586950976E-5 2.1326672586950976E-5 5 0.0 0.0 0.0 2.1326672586950976E-5 2.1326672586950976E-5 6 0.0 0.0 0.0 2.1326672586950976E-5 2.1326672586950976E-5 7 0.0 0.0 0.0 2.1326672586950976E-5 4.265334517390195E-5 8 0.0 0.0 0.0 2.1326672586950976E-5 4.265334517390195E-5 9 0.0 0.0 0.0 4.265334517390195E-5 4.265334517390195E-5 10-11 0.0 0.0 0.0 6.398001776085294E-5 4.265334517390195E-5 12-13 0.0 0.0 0.0 1.0663336293475489E-4 9.59700266412794E-5 14-15 0.0 0.0 0.0 1.2796003552170587E-4 1.0663336293475489E-4 16-17 0.0 0.0 0.0 1.4928670810865683E-4 1.0663336293475489E-4 18-19 0.0 0.0 0.0 1.706133806956078E-4 1.0663336293475489E-4 20-21 0.0 0.0 0.0 2.1326672586950978E-4 1.0663336293475489E-4 22-23 0.0 0.0 0.0 2.1326672586950978E-4 1.0663336293475489E-4 24-25 0.0 2.1326672586950976E-5 0.0 4.37196788032495E-4 1.0663336293475489E-4 26-27 0.0 5.3316681467377444E-5 0.0 8.530669034780391E-4 1.0663336293475489E-4 28-29 0.0 7.464335405432841E-5 0.0 0.003945434428585931 1.0663336293475489E-4 30-31 0.0 8.53066903478039E-5 0.0 0.01902339194756027 1.0663336293475489E-4 32-33 0.0 8.53066903478039E-5 0.0 0.05522541866390955 1.0663336293475489E-4 34-35 0.0 8.53066903478039E-5 0.0 0.10169623823087573 1.0663336293475489E-4 36-37 0.0 9.59700266412794E-5 0.0 0.17611566222304115 1.1729669922823038E-4 38-39 0.0 1.0663336293475489E-4 0.0 0.30743464867719184 1.2796003552170587E-4 40-41 0.0 1.0663336293475489E-4 0.0 0.4669261696187047 1.2796003552170587E-4 42-43 0.0 1.2796003552170587E-4 0.0 0.6350336662853457 1.2796003552170587E-4 44-45 0.0 1.2796003552170587E-4 0.0 0.836336128833576 1.2796003552170587E-4 46-47 0.0 1.2796003552170587E-4 0.0 1.0724117310348298 1.2796003552170587E-4 48-49 0.0 1.2796003552170587E-4 0.0 1.3283744554234156 1.2796003552170587E-4 50-51 0.0 1.2796003552170587E-4 0.0 1.6141092147433846 1.2796003552170587E-4 52-53 0.0 1.2796003552170587E-4 0.0 1.9121068108008505 1.2796003552170587E-4 54-55 0.0 1.2796003552170587E-4 0.0 2.241443952224841 1.2796003552170587E-4 56-57 0.0 1.4928670810865683E-4 0.0 2.614052912327755 1.2796003552170587E-4 58-59 0.0 1.812767169890833E-4 0.0 3.0178627944253784 1.2796003552170587E-4 60-61 0.0 1.919400532825588E-4 0.0 3.459634153727775 1.2796003552170587E-4 62-63 0.0 1.919400532825588E-4 0.0 3.919000017914405 1.4928670810865683E-4 64-65 0.0 1.919400532825588E-4 0.0 4.398882141129683 1.4928670810865683E-4 66-67 1.0663336293475488E-5 1.919400532825588E-4 0.0 4.945570066223584 1.4928670810865683E-4 68-69 2.1326672586950976E-5 1.919400532825588E-4 0.0 5.541437298302994 1.4928670810865683E-4 70-71 2.1326672586950976E-5 1.919400532825588E-4 0.0 6.177569288226568 1.4928670810865683E-4 72-73 2.1326672586950976E-5 1.919400532825588E-4 0.0 6.842481622806232 1.5995004440213232E-4 74-75 2.1326672586950976E-5 1.919400532825588E-4 0.0 7.52262120161298 1.706133806956078E-4 76-77 2.1326672586950976E-5 1.919400532825588E-4 0.0 8.255810878479767 1.706133806956078E-4 78-79 2.1326672586950976E-5 1.919400532825588E-4 0.0 9.057021977562634 1.706133806956078E-4 80-81 2.1326672586950976E-5 2.0260338957603429E-4 0.0 9.89203585269582 1.706133806956078E-4 82-83 2.1326672586950976E-5 2.1326672586950978E-4 0.0 10.744324332624434 1.706133806956078E-4 84-85 2.1326672586950976E-5 2.3459339845646073E-4 0.0 11.600760850371213 1.706133806956078E-4 86-87 2.1326672586950976E-5 2.3459339845646073E-4 0.0 12.488814160228145 1.919400532825588E-4 88-89 2.1326672586950976E-5 2.3459339845646073E-4 0.0 13.438597523888006 2.1326672586950978E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6660 0.0 43.769207 1 GGTATCA 3680 0.0 41.60931 1 TCAACGC 8460 0.0 33.777935 4 CAACGCA 8775 0.0 32.34487 5 ATCAACG 8930 0.0 32.000153 3 TATCAAC 9375 0.0 30.68145 2 AACGCAG 9360 0.0 30.323639 6 GTACATG 15555 0.0 26.260656 1 TACATGG 16490 0.0 24.581692 2 ACGCAGA 11565 0.0 24.376886 7 ACATGGG 16925 0.0 23.446856 3 CGCAGAG 11930 0.0 23.31007 8 CATGGGG 12615 0.0 20.056122 4 GAGTACA 12200 0.0 19.9179 1 GCAGAGT 13825 0.0 19.01652 9 GTGTACG 555 0.0 18.850035 1 AGTACAT 12075 0.0 18.671577 2 AGAGTAC 11890 0.0 18.337944 10-11 GTGGTAT 2755 0.0 17.778622 1 GTATATA 1655 0.0 17.527271 1 >>END_MODULE