##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920848_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2128070 Sequences flagged as poor quality 0 Sequence length 98 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.5619608377544 31.0 30.0 34.0 26.0 34.0 2 29.636164693830562 31.0 30.0 34.0 25.0 34.0 3 29.71178062751695 31.0 30.0 34.0 25.0 34.0 4 33.28679930641379 35.0 35.0 37.0 28.0 37.0 5 33.257611826678634 35.0 35.0 37.0 27.0 37.0 6 33.377837195205046 36.0 35.0 37.0 28.0 37.0 7 33.24179796717213 35.0 35.0 37.0 27.0 37.0 8 33.19474171432331 35.0 35.0 37.0 27.0 37.0 9 34.587106627131625 38.0 35.0 39.0 27.0 39.0 10-11 34.41505660058175 38.0 34.5 39.0 27.0 39.0 12-13 34.279960010713936 38.0 34.0 39.0 27.0 39.0 14-15 35.15505927906507 38.5 34.5 40.0 26.5 41.0 16-17 35.055306921294886 38.0 34.0 40.0 26.0 41.0 18-19 34.95361219320793 38.5 34.0 40.0 25.0 41.0 20-21 34.87086538506722 38.5 34.0 40.0 25.0 41.0 22-23 34.65908734205172 38.0 34.0 40.0 24.5 41.0 24-25 34.472026766036834 38.0 34.0 40.0 24.0 41.0 26-27 34.542307348912395 38.0 34.0 40.0 24.0 41.0 28-29 34.408102646999396 38.0 34.0 40.0 23.5 41.0 30-31 34.17946496120898 38.0 33.5 40.0 22.0 41.0 32-33 33.94845799245326 38.0 33.0 40.0 20.0 41.0 34-35 33.63472794597922 38.0 33.0 40.0 17.5 41.0 36-37 33.34306249324506 38.0 32.5 40.0 16.0 41.0 38-39 33.14985315332672 38.0 32.0 40.0 15.0 41.0 40-41 32.958766393962605 38.0 32.0 40.0 14.0 41.0 42-43 32.73339692773264 37.5 31.5 40.0 9.5 41.0 44-45 32.46198268853938 37.0 31.0 40.0 9.0 41.0 46-47 32.20841349203739 37.0 31.0 40.0 8.0 41.0 48-49 31.904214147091025 37.0 30.5 40.0 7.0 41.0 50-51 30.760580009116243 35.5 29.0 38.0 4.0 40.0 52-53 31.24506336727645 35.5 30.5 38.5 2.0 39.5 54-55 31.914493414220395 37.0 31.0 39.5 2.0 40.5 56-57 31.872820442936558 37.0 31.0 40.0 2.0 41.0 58-59 31.633519339119484 36.0 31.0 39.5 2.0 41.0 60-61 31.309424971922915 36.0 30.0 39.0 2.0 41.0 62-63 30.926962928851026 35.0 30.0 39.0 2.0 40.0 64-65 30.50456328974141 35.0 29.0 39.0 2.0 40.0 66-67 30.11827219029449 35.0 29.0 38.0 2.0 40.0 68-69 29.668827388196817 34.5 28.0 37.5 2.0 40.0 70-71 29.343053095057964 34.0 28.0 37.0 2.0 39.5 72-73 28.884422504898808 34.0 28.0 36.5 2.0 39.0 74-75 28.439837975254573 34.0 27.0 36.0 2.0 39.0 76-77 28.02437701767329 34.0 26.0 35.5 2.0 38.0 78-79 27.567351637869056 33.0 26.0 35.0 2.0 37.0 80-81 27.123027907916565 33.0 25.5 35.0 2.0 37.0 82-83 26.65296982712035 33.0 25.0 35.0 2.0 36.0 84-85 26.26900125465798 33.0 24.0 35.0 2.0 36.0 86-87 25.826436630374 32.0 22.5 35.0 2.0 35.0 88-89 25.300214983529678 32.0 20.0 34.5 2.0 35.0 90-91 24.81356463838126 32.0 18.0 34.0 2.0 35.0 92-93 24.283959879139317 31.0 10.0 34.0 2.0 35.0 94-95 23.650058973623988 31.0 2.0 34.0 2.0 35.0 96-97 23.007240363333914 31.0 2.0 34.0 2.0 35.0 98 22.611228953934788 31.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 76673.0 3 12896.0 4 9491.0 5 7712.0 6 7279.0 7 7410.0 8 8577.0 9 9895.0 10 10753.0 11 12026.0 12 13043.0 13 13535.0 14 12681.0 15 13265.0 16 15050.0 17 16326.0 18 16672.0 19 15888.0 20 16663.0 21 17448.0 22 19281.0 23 21544.0 24 24766.0 25 28396.0 26 33435.0 27 39615.0 28 46744.0 29 55615.0 30 66264.0 31 80234.0 32 98874.0 33 124339.0 34 159534.0 35 210325.0 36 276247.0 37 314071.0 38 193958.0 39 21544.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.17114644635582 17.946799079523164 12.593886751169459 25.28816772295156 2 16.07712749706946 19.31110916838457 39.19972513552868 25.412038199017296 3 19.967147701396577 23.031012287887652 28.545122561633306 28.456717449082465 4 13.294917220184862 15.061804636158428 36.08722440997616 35.55605373368056 5 14.384073178102783 36.72328519372015 34.16659185732864 14.726049770848423 6 34.22574004267759 34.52890138091165 16.80331644403501 14.442042132375752 7 29.813197255764855 31.194197215347643 20.486078148101846 18.506527380785652 8 27.173522788365016 34.178506039678034 19.680741077705637 18.96723009425131 9 26.855648545395596 15.655218108426885 19.325163176023345 38.16397017015418 10-11 25.84010394394921 25.133031338254852 27.377177442471346 21.649687275324588 12-13 26.317214103918463 22.453895156712296 27.409355180697524 23.819535558671713 14-15 23.39785890119898 24.128867240173317 24.729919063241667 27.74335479538604 16-17 23.50664092393747 27.32044646106788 25.580674061944674 23.59223855304997 18-19 23.468148531520537 26.240064080642327 27.283795405438628 23.007991982398508 20-21 23.937513299232435 25.64082608659872 27.11538619795371 23.306274416215132 22-23 23.769881332260027 25.49248135065011 26.891655866611263 23.8459814504786 24-25 23.491697344320944 25.870601618990236 26.890833942419658 23.746867094269167 26-27 23.340665779186796 26.040653224058257 26.87561629458187 23.743064702173072 28-29 23.213790791579797 26.1956115207864 26.965632332223215 23.624965355410584 30-31 23.575374765907203 25.97552671026134 26.74650797131956 23.70259055251189 32-33 23.243731009735704 26.01425929450801 26.773329385473282 23.968680310283 34-35 23.70875039859384 26.06854376377697 26.63655618694234 23.586149650686856 36-37 23.790152476068865 25.730115304287597 26.581175819031543 23.89855640061199 38-39 23.452717999445937 25.999543157677145 26.721571122279414 23.826167720597503 40-41 23.58571761999981 25.88908521129071 26.874014274450538 23.65118289425895 42-43 23.59979865198732 25.81502778913938 26.597091209989276 23.988082348884024 44-45 23.472555978728675 25.919088775955384 26.714735464396465 23.89361978091948 46-47 23.699630114809437 25.88670453165366 26.472295162958186 23.941370190578716 48-49 23.467378155897258 26.08294996073919 26.3747061334113 24.074965749952252 50-51 23.41695115400704 26.05333412560641 26.574347989913612 23.955366730472942 52-53 23.56446379477244 25.939178114898574 26.642528039507635 23.85383005082135 54-55 23.273533290708894 25.893662249296344 26.816072401777014 24.016732058217748 56-57 23.187099330625646 26.02101995858276 26.644920255296267 24.146960455495332 58-59 23.22643345343337 25.68556776155953 26.816864818361864 24.271133966645237 60-61 23.12075686731802 25.784047896689273 26.986465373773054 24.108729862219654 62-63 23.07293047193135 25.672557122549716 27.09617566852461 24.158336736994322 64-65 23.033172112775745 25.613684086351302 26.962180016515276 24.390963784357673 66-67 23.043508732683122 25.75679596082876 26.793159781683514 24.406535524804603 68-69 23.205640292222004 25.441196170623844 26.907258947034762 24.445904590119394 70-71 22.98039885037771 25.41791212617649 26.95822305039369 24.643465973052102 72-73 23.11558321983342 25.351001132877638 26.796846234607973 24.73656941268097 74-75 22.938867646337926 25.6507338107251 26.808484262286424 24.60191428065055 76-77 22.947093301407214 25.38746161442143 27.004734712346785 24.660710371824575 78-79 22.9951823572748 25.32571290129936 26.901286165903947 24.777818575521888 80-81 23.084939078028963 25.322311782081975 26.85358738623389 24.739161753655175 82-83 23.065814241045313 25.298104622642796 26.89984391786431 24.73623721844758 84-85 22.86966449761379 25.31135745249736 26.87479140700571 24.94418664288314 86-87 22.950743175742698 25.2465763529442 26.944041643953902 24.8586388273592 88-89 22.961579103966667 25.034245008952034 26.844644835051046 25.159531052030253 90-91 22.97466504492782 25.114818167246533 26.903515967527508 25.007000820298135 92-93 23.187123138569987 24.93404667183467 26.887556793634733 24.991273395960615 94-95 22.954484384207426 24.70781378903948 27.13423688862699 25.203464938126103 96-97 23.15762850813696 24.51039412194808 27.03320263976802 25.29877473014694 98 23.170510379509583 24.497452792876963 26.854025963740895 25.47801086387256 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 110.0 1 78.5 2 79.5 3 136.5 4 130.0 5 126.5 6 234.0 7 449.0 8 673.0 9 787.5 10 782.0 11 775.0 12 839.0 13 914.0 14 1018.0 15 1130.5 16 1236.5 17 1303.0 18 1323.0 19 1396.5 20 1460.0 21 1533.0 22 1767.0 23 2134.0 24 2609.0 25 3427.0 26 4620.0 27 6265.5 28 8218.0 29 10890.5 30 14766.5 31 20579.5 32 25928.5 33 30133.0 34 35773.5 35 41630.5 36 47140.5 37 51870.5 38 54774.0 39 57874.5 40 61653.5 41 64207.0 42 67537.5 43 73265.0 44 78800.0 45 82150.5 46 84428.0 47 86921.0 48 88531.5 49 88843.5 50 88889.0 51 89303.5 52 89886.5 53 89989.0 54 87285.5 55 81996.0 56 75368.5 57 68346.0 58 62571.5 59 55151.5 60 46431.5 61 38294.5 62 31129.5 63 24008.5 64 17614.0 65 13491.0 66 10315.0 67 8083.0 68 6331.5 69 4851.5 70 3706.0 71 2778.0 72 2146.0 73 1695.5 74 1334.5 75 976.5 76 680.0 77 437.5 78 246.5 79 153.0 80 94.5 81 49.5 82 33.0 83 22.5 84 14.5 85 11.5 86 10.0 87 7.0 88 5.5 89 7.5 90 5.0 91 1.5 92 2.0 93 1.5 94 0.5 95 1.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.34914265038274117 2 0.02236768527351074 3 0.017151691438721473 4 0.014896126537190975 5 0.020629020661914316 6 0.023025558369790467 7 0.01240560695841772 8 0.00667271283369438 9 0.0 10-11 0.0 12-13 0.004417147932163886 14-15 0.0023730422401518746 16-17 0.004252679658093953 18-19 0.035266697054138256 20-21 0.07224856325214866 22-23 0.09038706433528972 24-25 0.05876216477841425 26-27 0.06808986546495181 28-29 0.05237139755741117 30-31 0.04583965753006245 32-33 0.01574196337526491 34-35 0.3077671317202912 36-37 0.47298726075739994 38-39 0.43123581461136146 40-41 0.4412213883941788 42-43 0.39270324754354885 44-45 0.36864388859389025 46-47 0.36735163786905506 48-49 0.35877579214969435 50-51 0.35661420911906094 52-53 0.4127448815123563 54-55 0.4128153679155291 56-57 0.38438585196915515 58-59 0.37089945349542075 60-61 0.38410390635646385 62-63 0.3667172602404996 64-65 0.41446005065622843 66-67 0.43323292936792496 68-69 0.37771313913546073 70-71 0.33831123976184996 72-73 0.32531824611032534 74-75 0.30741469970442703 76-77 0.3056760350928306 78-79 0.30511214386744795 80-81 0.3210420709845071 82-83 0.3172358052131744 84-85 0.31549714060157796 86-87 0.30381989314261276 88-89 0.3441146202897461 90-91 0.3237675452405231 92-93 0.3140639170703971 94-95 0.32047817975912446 96-97 0.32061915256547013 98 0.3161080227624091 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 2128070.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.98117608716305 #Duplication Level Percentage of deduplicated Percentage of total 1 70.38775678586823 33.7728735272315 2 13.097667409166549 12.568829725806339 3 5.902465946478353 8.49621773779384 4 3.189211578511068 6.120884893110352 5 2.010959646785003 4.824410445828523 6 1.2529748082451635 3.607152294431433 7 0.904232397001945 3.03702937049875 8 0.6237777410596518 2.3943671706428757 9 0.4605932951861096 1.9889827200802255 >10 2.0473496505396747 16.455134528309348 >50 0.0836188684381278 2.740726219421076 >100 0.0376158959835412 3.168667168858002 >500 0.0010853191167607993 0.39236060805482387 >1k 6.906576197568636E-4 0.43236358993299656 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.6990935448551976E-5 2 0.0 0.0 0.0 0.0 4.6990935448551976E-5 3 0.0 0.0 0.0 0.0 4.6990935448551976E-5 4 0.0 9.398187089710395E-5 0.0 0.0 4.6990935448551976E-5 5 0.0 9.398187089710395E-5 0.0 0.0 4.6990935448551976E-5 6 0.0 9.398187089710395E-5 0.0 0.0 2.8194561269131183E-4 7 0.0 9.398187089710395E-5 0.0 0.0 2.8194561269131183E-4 8 0.0 9.398187089710395E-5 0.0 0.0 2.8194561269131183E-4 9 0.0 9.398187089710395E-5 0.0 0.0 2.8194561269131183E-4 10-11 0.0 9.398187089710395E-5 0.0 0.0 5.638912253826237E-4 12-13 0.0 9.398187089710395E-5 0.0 0.0 0.0011042869830409714 14-15 0.0 9.398187089710395E-5 0.0 4.6990935448551976E-5 0.0013392416602837312 16-17 0.0 9.398187089710395E-5 0.0 4.6990935448551976E-5 0.0015507008698022152 18-19 0.0 9.398187089710395E-5 0.0 4.6990935448551976E-5 0.001691673676147871 20-21 0.0 9.398187089710395E-5 0.0 4.6990935448551976E-5 0.001903132885666355 22-23 0.0 1.4097280634565591E-4 0.0 2.819456126913119E-4 0.001973619288839183 24-25 0.0 1.4097280634565591E-4 0.0 5.638912253826237E-4 0.001973619288839183 26-27 0.0 1.4097280634565591E-4 0.0 0.0013157461925594554 0.002020610224287735 28-29 0.0 1.4097280634565591E-4 0.0 0.004746084480303749 0.002020610224287735 30-31 0.0 1.879637417942079E-4 0.0 0.021028443613227008 0.002067601159736287 32-33 0.0 2.8194561269131183E-4 0.0 0.05495589900708153 0.002114592095184839 34-35 0.0 2.8194561269131183E-4 0.0 0.09875145084513198 0.0021615830306333907 36-37 0.0 3.2893654813986384E-4 0.0 0.17027165459782806 0.0021615830306333907 38-39 0.0 3.759274835884158E-4 0.0 0.2913437997810222 0.0023260513047033225 40-41 0.0 3.759274835884158E-4 0.0 0.43748560902601885 0.0023495467724275985 42-43 0.0 4.2291841903696777E-4 0.0 0.5892193395893932 0.0023965377078761507 44-45 0.0 4.6990935448551973E-4 0.0 0.7757498578524202 0.0025140150464975303 46-47 0.0 4.6990935448551973E-4 0.0 1.0066398191788803 0.002654987852843187 48-49 0.0 5.638912253826237E-4 0.0 1.2583232694413247 0.0027724651914645664 50-51 0.0 5.638912253826237E-4 0.0 1.5428768790500311 0.0028664470623616703 52-53 0.0 5.638912253826237E-4 0.0 1.8266316427561122 0.0029604289332587743 54-55 0.0 5.638912253826237E-4 0.0 2.1365603575070367 0.0031014017396044304 56-57 0.0 5.638912253826237E-4 0.0 2.510702185548408 0.003171888142777258 58-59 0.0 5.638912253826237E-4 0.0 2.9260550639781586 0.003265870013674362 60-61 0.0 5.638912253826237E-4 0.0 3.368451225758551 0.0032893654813986382 62-63 0.0 5.638912253826237E-4 0.0 3.818788855629749 0.0034303382877442943 64-65 0.0 6.108821608311756E-4 0.0 4.2958408323034485 0.0034538337554685704 66-67 0.0 6.108821608311756E-4 0.0 4.854727523060802 0.003477329223192846 68-69 0.0 6.108821608311756E-4 0.0 5.481586601944485 0.0035243201586413983 70-71 0.0 6.108821608311756E-4 0.0 6.15137190036042 0.003594806561814226 72-73 0.0 6.108821608311756E-4 0.0 6.824658023467274 0.00368878843271133 74-75 0.0 6.108821608311756E-4 0.0 7.5036065542956765 0.00380626577133271 76-77 0.0 6.108821608311756E-4 0.0 8.24002499917766 0.0038532567067812618 78-79 0.0 6.108821608311756E-4 0.0 9.064645429896572 0.0038532567067812618 80-81 0.0 6.108821608311756E-4 0.0 9.932450530292707 0.0039002476422298135 82-83 0.0 6.108821608311756E-4 0.0 10.809160412956341 0.003994229513126918 84-85 0.0 6.578730962797277E-4 0.0 11.699333198625984 0.00404122044857547 86 0.0 6.578730962797277E-4 0.0 12.375908687214237 0.004088211384024021 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3515 0.0 42.16142 1 GGTATCA 1945 0.0 41.646427 1 TCAACGC 4315 0.0 33.489864 4 ATCAACG 4365 0.0 33.31645 3 CAACGCA 4370 0.0 33.278324 5 TATCAAC 4625 0.0 31.841032 2 AACGCAG 4640 0.0 31.137543 6 GTACATG 6645 0.0 28.674116 1 TACATGG 6945 0.0 26.687197 2 ACATGGG 6975 0.0 25.848299 3 ACGCAGA 5665 0.0 25.011404 7 CGCAGAG 5785 0.0 24.412174 8 GAGTACA 4845 0.0 22.133331 1 TATAGCG 125 2.8558305E-4 22.020384 5 CATGGGG 4485 0.0 20.866583 4 GCAGAGT 6575 0.0 20.851368 9 GTATAGA 595 0.0 20.111341 1 TAAGGTG 880 0.0 19.810003 5 GTAAGGT 660 0.0 19.46246 4 AGTACAT 5185 0.0 18.93472 2 >>END_MODULE