##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920846_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2428974 Sequences flagged as poor quality 0 Sequence length 101 %GC 48 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.06741117854699 31.0 30.0 34.0 26.0 34.0 2 30.079310441363308 31.0 30.0 34.0 26.0 34.0 3 30.224409153823796 31.0 30.0 34.0 26.0 34.0 4 33.85291320532867 35.0 35.0 37.0 30.0 37.0 5 33.34980201517184 35.0 33.0 37.0 27.0 37.0 6 33.290299937339796 35.0 33.0 37.0 27.0 37.0 7 33.10063137769281 35.0 33.0 37.0 26.0 37.0 8 33.02754702191131 35.0 33.0 37.0 26.0 37.0 9 34.34016296592718 38.0 34.0 39.0 27.0 39.0 10-11 34.13146414906046 37.0 33.5 39.0 26.0 39.0 12-13 33.939156409249335 37.0 33.0 39.0 25.0 39.0 14-15 34.80700781482223 38.0 33.0 40.0 25.0 41.0 16-17 34.67431598691464 38.0 33.0 40.0 25.0 41.0 18-19 34.57593967658773 38.0 33.0 40.0 24.5 41.0 20-21 34.45322716504994 38.0 33.0 40.0 24.0 41.0 22-23 34.302224107792014 38.0 33.0 40.0 23.0 41.0 24-25 34.1141438730921 38.0 33.0 40.0 22.0 41.0 26-27 33.916538834915485 38.0 33.0 40.0 19.5 41.0 28-29 33.852146214821566 38.0 32.5 40.0 20.0 41.0 30-31 33.846580696211646 38.0 33.0 40.0 19.0 41.0 32-33 33.69529706781546 38.0 32.5 40.0 19.0 41.0 34-35 33.525584464881064 38.0 32.0 40.0 18.0 41.0 36-37 33.32955272473069 38.0 32.0 40.0 16.5 41.0 38-39 33.13908588564554 38.0 32.0 40.0 16.0 41.0 40-41 32.90139334550308 37.5 31.0 40.0 15.0 41.0 42-43 32.9229757090854 38.0 32.0 40.0 15.0 41.0 44-45 32.77236952721602 37.5 31.0 40.0 11.0 41.0 46-47 32.51931926813543 37.0 31.0 40.0 9.0 41.0 48-49 32.244546462827515 37.0 31.0 40.0 8.0 41.0 50-51 31.97424118166765 37.0 30.0 40.0 7.5 41.0 52-53 31.707199212507007 36.5 30.0 40.0 4.0 41.0 54-55 31.409704261964105 36.0 30.0 39.5 2.0 41.0 56-57 31.082027226310366 36.0 29.0 39.0 2.0 40.5 58-59 30.73805997923403 35.0 29.0 39.0 2.0 40.0 60-61 30.395302913905212 35.0 28.0 39.0 2.0 40.0 62-63 30.05919515812026 35.0 28.0 38.5 2.0 40.0 64-65 29.64758844680923 34.0 28.0 38.0 2.0 40.0 66-67 29.199348572689537 34.0 27.0 37.5 2.0 40.0 68-69 28.742396995603904 34.0 26.0 37.0 2.0 39.5 70-71 28.3018031481605 34.0 26.0 36.5 2.0 39.0 72-73 27.83669462909031 33.0 26.0 36.0 2.0 39.0 74-75 27.375864665492507 33.0 25.0 35.5 2.0 38.5 76-77 25.979091171828106 30.5 23.0 34.0 2.0 36.0 78-79 26.80237375945564 32.5 25.0 35.0 2.0 37.0 80-81 26.81817569887533 33.0 25.0 35.0 2.0 36.5 82-83 26.45999277884407 33.0 24.0 35.0 2.0 36.0 84-85 26.12210031890008 32.5 23.5 35.0 2.0 36.0 86-87 25.559417062512814 32.0 20.0 35.0 2.0 35.0 88-89 25.177396299836886 32.0 19.5 34.5 2.0 35.0 90-91 24.781685806435146 31.5 18.0 34.0 2.0 35.0 92-93 24.441438236885205 31.0 14.0 34.0 2.0 35.0 94-95 24.024962391528277 31.0 4.5 34.0 2.0 35.0 96-97 23.44975429955199 31.0 2.0 34.0 2.0 35.0 98-99 22.79823703341411 31.0 2.0 34.0 2.0 35.0 100-101 20.59556071822918 28.0 2.0 33.0 2.0 34.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 63239.0 3 28518.0 4 15490.0 5 10895.0 6 9316.0 7 9129.0 8 10300.0 9 11958.0 10 13397.0 11 15361.0 12 16859.0 13 18295.0 14 19696.0 15 20738.0 16 22113.0 17 23059.0 18 22380.0 19 21797.0 20 21935.0 21 22788.0 22 24379.0 23 27490.0 24 31647.0 25 37178.0 26 44131.0 27 51979.0 28 61258.0 29 72021.0 30 83602.0 31 98760.0 32 118096.0 33 143055.0 34 179329.0 35 229089.0 36 296917.0 37 338307.0 38 182494.0 39 11979.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.906870553955585 18.90522227437833 12.809186477507748 25.37872069415834 2 16.586921062143933 20.237474752714522 37.56219704286666 25.613407142274884 3 20.32566688544138 23.208181570385207 28.46375682572988 28.00239471844353 4 14.019081030556826 15.590692541762916 35.242877554465764 35.147348873214504 5 14.581948061305363 36.75011579673299 34.11592024950336 14.552015892458286 6 34.95363863938535 34.71740135692189 16.181058649655824 14.147901354036929 7 30.360426399990764 30.797116984592144 19.888757691146957 18.953698924270135 8 27.24765752430276 35.015843219114586 19.034493163322217 18.70200609326044 9 26.699399382561317 15.530916461073657 18.81056473211341 38.95911942425162 10-11 26.247307010490033 25.30136546469448 26.97661411412959 21.474713410685897 12-13 26.687338262724502 22.15551055139621 27.150326509137457 24.006824676741836 14-15 23.370200165734847 23.946212220976772 24.473732098544843 28.209855514743538 16-17 23.93098415187211 27.098982464459176 25.2843132186104 23.685720165058317 18-19 23.83994182249681 26.42904672535233 26.571462121789573 23.15954933036128 20-21 24.367539490621485 25.61513197792574 26.588371494884942 23.428957036567834 22-23 24.006904121871184 25.564019290007728 26.43465724141682 23.994419346704266 24-25 23.83419571728636 25.7496273026599 26.548902957810128 23.867274022243613 26-27 23.750275501103037 26.02895284862991 26.410246375229413 23.810525275037644 28-29 23.72074633212624 26.110009956723772 26.397261952444545 23.77198175870544 30-31 24.00839074966794 25.82408045500133 26.342057706170163 23.82547108916057 32-33 23.73227988135281 25.852156374609663 26.374414048222818 24.041149695814713 34-35 23.982579237272343 25.92189810793288 26.31751569859602 23.77800695619876 36-37 24.053456839081385 25.80093222296757 26.316273875396405 23.82933706255464 38-39 23.889625481344694 25.859666542227274 26.378873279168907 23.87183469725913 40-41 24.037987769937782 25.766108450536894 26.364228046041767 23.83167573348356 42-43 23.91693047763493 25.725867035154504 26.314997398776157 24.042205088434404 44-45 23.841323865970306 25.802641101903873 26.375315673139188 23.980719358986637 46-47 23.847706615088697 25.76258608082594 26.253594015407085 24.136113288678278 48-49 23.762495069496424 25.862745485552697 26.326212821532653 24.048546623418225 50-51 23.77735279821182 25.91703043732566 26.311247137512822 23.994369626949698 52-53 23.90810678947092 25.771600967145265 26.260690732759727 24.059601510624084 54-55 23.590711087769677 25.607341105592113 26.531320196295887 24.270627610342324 56-57 23.567609451466858 25.818015559212064 26.351168999491737 24.263205989829345 58-59 23.549190863630486 25.758825239224898 26.39761602644175 24.294367870702864 60-61 23.623038460231818 25.698464123240754 26.463900873717144 24.214596542810288 62-63 23.52769579066967 25.696437508324806 26.45263347943817 24.323233221567357 64-65 23.298415577223754 25.592056167596994 26.46044707216828 24.64908118301097 66-67 23.299638116376485 25.707122824409733 26.317771836421933 24.675467222791852 68-69 23.388280795762988 25.560109329022584 26.3467615624342 24.704848312780232 70-71 23.275592632810405 25.378277357137886 26.331418937977958 25.01471107207375 72-73 23.347859673127495 25.423119719048053 26.20696955399723 25.022051053827226 74-75 23.238196838205738 25.521126598064225 26.080383405617457 25.160293158112584 76-77 23.194240637496897 25.216195864879413 26.382963268525305 25.206600229098385 78-79 23.116211959090123 25.26199058873359 26.40352174681543 25.21827570536086 80-81 23.154425078930114 25.317403536439613 26.229853133888327 25.298318250741946 82-83 23.149939422262346 25.320526743244066 26.18942869583388 25.340105138659712 84-85 23.065766163607858 25.189936353333188 26.18044854275588 25.563848940303068 86-87 22.978620032473756 25.09944494930284 26.26269234984396 25.659242668379445 88-89 22.918708245378447 25.07940019375449 26.2132596096864 25.788631951180662 90-91 22.910666898659414 25.057404789577003 26.15022686372841 25.881701448035173 92-93 22.956731116833712 24.938017032560012 26.18104356139402 25.92420828921226 94-95 22.747735276129884 24.776358067526203 26.29568430818648 26.180222348157432 96-97 22.82779579832296 24.559716921103224 26.336432656672553 26.276054623901263 98-99 22.707930757713964 24.548626400150027 26.236598053062476 26.506844789073536 100-101 22.849546092425914 24.40019540083418 26.27684213971736 26.473416367022544 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 23.0 1 15.0 2 21.5 3 45.0 4 40.5 5 47.5 6 101.0 7 182.5 8 271.5 9 309.5 10 269.5 11 227.0 12 267.5 13 336.0 14 354.5 15 364.0 16 430.0 17 509.5 18 583.0 19 660.0 20 779.5 21 978.0 22 1224.0 23 1602.5 24 2056.0 25 2615.0 26 3536.0 27 4769.0 28 6364.5 29 8536.0 30 11554.5 31 15548.0 32 20788.5 33 25662.0 34 29837.0 35 34924.5 36 41262.5 37 47366.0 38 52348.5 39 57414.0 40 63130.0 41 68979.0 42 73485.5 43 78036.5 44 83154.5 45 88173.5 46 93148.5 47 97761.0 48 102404.5 49 105485.0 50 106256.0 51 106713.5 52 107094.0 53 107009.0 54 104826.0 55 99341.5 56 92184.5 57 84035.0 58 75796.5 59 66358.0 60 55389.5 61 45751.5 62 37167.0 63 28592.5 64 21246.5 65 15774.0 66 11978.0 67 9353.0 68 6996.0 69 4976.0 70 3723.5 71 2785.0 72 2090.5 73 1716.5 74 1295.0 75 899.0 76 651.0 77 415.0 78 252.5 79 159.0 80 82.5 81 43.5 82 21.5 83 15.0 84 10.0 85 2.0 86 1.0 87 1.0 88 1.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19053312221538807 2 0.0 3 0.012186215249730957 4 0.015809144107759077 5 0.006134277270979434 6 0.10704107989628543 7 0.14236463626205964 8 0.12412648303357715 9 0.1428586720154271 10-11 0.11391641079731606 12-13 0.11438986172762657 14-15 0.1156661207571592 16-17 0.06543915249813297 18-19 0.07900455089268144 20-21 0.03694975738727545 22-23 0.08308034585796308 24-25 0.05767867420565226 26-27 0.06500687121393642 28-29 0.03979046296913841 30-31 0.0241048277997212 32-33 0.031556533746347225 34-35 0.020276050711123296 36-37 0.02408424297666422 38-39 0.030897819408523926 40-41 0.025257577890911966 42-43 0.01274200547226936 44-45 0.02599863152096317 46-47 0.033162149944791504 48-49 0.008892643560614482 50-51 0.014841657424081113 52-53 0.0072664425391132225 54-55 0.012083291134446067 56-57 0.005084451295073558 58-59 0.003622928858028122 60-61 0.02291090806241648 62-63 0.00981896059817849 64-65 0.007060594308543443 66-67 0.04049034695307566 68-69 0.08937930171339833 70-71 0.0218610820865106 72-73 0.04468965085669917 74-75 0.08614748449345279 76-77 0.24691495256845072 78-79 0.07752244363257901 80-81 0.016529612914753307 82-83 0.011383407150508815 84-85 0.013647737686776391 86-87 0.26358865924460284 88-89 0.6214352232671079 90-91 0.2669645702259472 92-93 0.3520416439204372 94-95 0.0014615224370454357 96-97 0.00454924589559213 98-99 0.0033964958044013643 100-101 0.0049609423567316905 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2428974.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.28433544225284 #Duplication Level Percentage of deduplicated Percentage of total 1 76.70232909317177 47.77353594441179 2 12.800507386953619 15.94542191840109 3 4.66254430840378 8.712104211569633 4 2.1547974723841166 5.368405143203635 5 1.1432047854922835 3.5601875169395045 6 0.685381724608391 2.5613127144899264 7 0.4183608778977639 1.8240130478429792 8 0.28354106189741884 1.4128133288697127 9 0.20572498253093918 1.1532099438727759 >10 0.9046649206549792 9.258649600008475 >50 0.030237567349906107 1.261109245365061 >100 0.007910578796728438 0.8230157922395277 >500 7.289698701268065E-4 0.2928932310936788 >1k 6.626998819224091E-5 0.053328361692210106 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 4.1169646113955936E-5 8.233929222791187E-5 0.0 0.0 0.0 3 4.1169646113955936E-5 8.233929222791187E-5 0.0 0.0 0.0 4 4.1169646113955936E-5 1.235089383418678E-4 0.0 0.0 0.0 5 1.235089383418678E-4 1.6467858445582374E-4 0.0 0.0 0.0 6 1.235089383418678E-4 1.6467858445582374E-4 0.0 0.0 0.0 7 1.6467858445582374E-4 1.6467858445582374E-4 0.0 0.0 0.0 8 2.0584823056977967E-4 1.6467858445582374E-4 0.0 0.0 0.0 9 2.0584823056977967E-4 1.6467858445582374E-4 0.0 0.0 0.0 10-11 2.0584823056977967E-4 1.6467858445582374E-4 0.0 0.0 0.0 12-13 2.676026997407136E-4 1.6467858445582374E-4 0.0 0.0 0.0 14-15 3.087723458546695E-4 1.6467858445582374E-4 0.0 2.0584823056977968E-5 0.0 16-17 3.4994199196862545E-4 1.6467858445582374E-4 0.0 4.1169646113955936E-5 0.0 18-19 4.1169646113955934E-4 2.0584823056977967E-4 0.0 1.4409376139884578E-4 0.0 20-21 4.5286610725351527E-4 2.0584823056977967E-4 0.0 2.2643305362675766E-4 0.0 22-23 4.5286610725351527E-4 2.0584823056977967E-4 0.0 3.911116380825814E-4 0.0 24-25 7.410536300512068E-4 2.0584823056977967E-4 0.0 7.616384531081848E-4 0.0 26-27 7.410536300512068E-4 2.0584823056977967E-4 0.0 0.0010498259759058764 0.0 28-29 9.469018606209866E-4 2.0584823056977967E-4 0.0 0.0044669066033642185 0.0 30-31 0.0011115804450768103 2.0584823056977967E-4 0.0 0.02025546588806632 0.0 32-33 0.0011321652681337883 2.0584823056977967E-4 0.0 0.05339703100980085 0.0 34-35 0.0011939197373047222 3.911116380825814E-4 0.0 0.09786024881287325 0.0 36-37 0.00131742867564659 4.1169646113955934E-4 0.0 0.1696601116356124 0.0 38-39 0.0015232769062163696 4.1169646113955934E-4 0.0 0.298027068218927 0.0 40-41 0.0015232769062163696 4.1169646113955934E-4 0.0 0.44718469608978934 0.0 42-43 0.0015850313753873035 4.322812841965373E-4 0.0 0.6050908737598673 0.0 44-45 0.0016879554906721933 4.5286610725351527E-4 0.0 0.7925774421628227 0.0 46-47 0.0018938037212419732 4.5286610725351527E-4 0.0 1.0178371608753327 0.0 48-49 0.002017312659583841 4.734509303104933E-4 0.0 1.2671811225645067 0.0 50-51 0.002017312659583841 5.146205764244492E-4 0.0 1.5405475727611742 0.0 52-53 0.002017312659583841 5.352053994814272E-4 0.0 1.8239800014327037 0.0 54-55 0.002017312659583841 5.352053994814272E-4 0.0 2.139401245134777 0.0 56-57 0.0022231608901536206 6.58714337823295E-4 0.0 2.5013236041225637 0.0 58-59 0.0022231608901536206 6.792991608802729E-4 0.0 2.8929292779585127 4.1169646113955936E-5 60-61 0.0022643305362675765 7.822232761651628E-4 0.0 3.3219787449351044 4.1169646113955936E-5 62-63 0.0022643305362675765 7.822232761651628E-4 0.0 3.7591180473730885 4.1169646113955936E-5 64-65 0.0022643305362675765 7.822232761651628E-4 0.0 4.2179949229592415 4.1169646113955936E-5 66-67 0.0023466698284954884 8.233929222791187E-4 0.0 4.741302294713735 4.1169646113955936E-5 68-69 0.0023466698284954884 8.645625683930746E-4 0.0 5.328463787590975 4.1169646113955936E-5 70-71 0.002408424297666422 9.263170375640086E-4 0.0 5.948787430413006 4.1169646113955936E-5 72-73 0.0024290091207234002 9.880715067349425E-4 0.0 6.589366539123103 4.1169646113955936E-5 74-75 0.0024290091207234002 9.880715067349425E-4 0.0 7.231118982747448 4.1169646113955936E-5 76-77 0.0024495939437803784 9.880715067349425E-4 0.0 7.927585886057241 4.1169646113955936E-5 78-79 0.002470178766837356 9.880715067349425E-4 0.0 8.690418258902731 4.1169646113955936E-5 80-81 0.00263485735129318 9.880715067349425E-4 0.0 9.494337938569949 4.1169646113955936E-5 82-83 0.00263485735129318 9.880715067349425E-4 0.0 10.326211807948543 4.1169646113955936E-5 84-85 0.002696611820464114 9.880715067349425E-4 0.0 11.149501806112376 4.1169646113955936E-5 86-87 0.0027583662896350477 9.880715067349425E-4 0.0 12.014599579904932 4.1169646113955936E-5 88-89 0.0027583662896350477 9.880715067349425E-4 2.0584823056977968E-5 12.931756371208586 4.1169646113955936E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 2125 0.0 38.706932 1 GTATCAA 3595 0.0 38.088615 1 ATCAACG 4240 0.0 32.015324 3 TCAACGC 4295 0.0 31.494843 4 CAACGCA 4285 0.0 31.453035 5 TATCAAC 4510 0.0 30.098663 2 AACGCAG 4640 0.0 29.557991 6 GTACATG 6950 0.0 25.516764 1 TACATGG 6945 0.0 25.013046 2 ACGCAGA 5625 0.0 24.044592 7 ACATGGG 6945 0.0 23.714554 3 CGCAGAG 5955 0.0 22.46983 8 GAGTACA 5395 0.0 20.533646 1 CATGGGG 5140 0.0 19.668636 4 AGTACAT 5115 0.0 19.48639 2 TATACGG 150 7.772251E-4 18.982573 5 GCAGAGT 6780 0.0 18.895853 9 TATACAG 1395 0.0 18.030043 5 GTATAGC 850 0.0 17.899158 1 ATACCGT 385 2.5465852E-10 17.256884 6 >>END_MODULE