FastQCFastQC Report
Mon 15 Aug 2016
SRR2920833_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920833_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90888
Sequences flagged as poor quality0
Sequence length25
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATAAA359.8092336E-519.01
CCCCCCT359.8092336E-519.016
TCCCCCC359.8092336E-519.015
GGGCATC453.4800927E-516.8888910
CATCCCC453.4800927E-516.8888913
GCATCCC453.4800927E-516.8888912
CCCCTGA402.7253936E-416.62518
GCATTTC350.00214912316.28571513
GATAAAG508.570951E-515.2000012
GTGCATT400.005228653614.2511
AGTGTGC400.005228653614.258
GTGTGCA400.005228653614.259
ATCCCCC551.9283855E-413.81818214
GGCATCC551.9283855E-413.81818211
GAGGGCA551.9283855E-413.8181828
CCCTGAC500.001480683713.30000119
AGGGCAT604.0265362E-412.6666679
CCCCCTG550.003030390212.09090917
TTTCTCA600.005803822511.08333416
ATAAAGA600.005803822511.0833343
Produced by FastQC (version 0.11.5)