FastQCFastQC Report
Mon 15 Aug 2016
SRR2920830_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920830_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122061
Sequences flagged as poor quality0
Sequence length25
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATCCC400.00524231414.25000112
ACTGTTC602.5302365E-514.2499998
CCCCCTG500.001485787413.29999917
CACTGTT701.0751096E-412.2142857
AATGTCC550.003040687412.0909098
ATACACT752.044134E-411.4000014
GATATAC803.717321E-410.6875011
TATACAC909.350485E-510.5555563
ACACTGT951.6158377E-410.06
TATGGCG900.00109811699.516
TGGCGAG900.00109811699.518
TCTACAA1002.7084272E-49.513
ATATACA900.00109811699.52
TGTTCTA950.00179853719.010
CTGTTCT1000.00286518188.5499999
ATGGCGA1050.004451678.14285817
TACACTG1250.00248448677.65
Produced by FastQC (version 0.11.5)