FastQCFastQC Report
Mon 15 Aug 2016
SRR2920813_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2920813_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66673
Sequences flagged as poor quality0
Sequence length25
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCAGAGTACTTTTTTTTTTTTTT2930.4394582514661107No Hit
GAGTACTTTTTTTTTTTTTTTTTTT2270.3404676555727206No Hit
CCCTAGAGGTGGAGCCCAGTGACAC1090.16348446897544733No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGTGG250.00597303119.06
GTACATG307.617276E-419.01
GCAGAGT250.00597303119.03
CCCCCTG250.00597303119.017
CAGAGTA350.002141035416.2857154
TACATGG400.00520929314.252
AGGTGGA400.00520929314.257
Produced by FastQC (version 0.11.5)