##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2920806_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 31458916 Sequences flagged as poor quality 0 Sequence length 98 %GC 50 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.508802274051654 31.0 30.0 34.0 25.0 34.0 2 29.602904562890853 31.0 30.0 34.0 25.0 34.0 3 29.738060841002913 31.0 31.0 34.0 25.0 34.0 4 33.15566178440478 37.0 35.0 37.0 27.0 37.0 5 33.12146909321351 37.0 35.0 37.0 27.0 37.0 6 33.19857864778303 37.0 35.0 37.0 27.0 37.0 7 33.09446250468389 37.0 35.0 37.0 26.0 37.0 8 33.07448209595016 37.0 35.0 37.0 26.0 37.0 9 34.49789706676479 39.0 35.0 39.0 27.0 39.0 10-11 34.38256634462548 39.0 35.0 39.0 26.5 39.0 12-13 34.24453971967756 39.0 35.0 39.0 25.0 39.0 14-15 35.20017662083461 39.0 36.0 41.0 25.0 41.0 16-17 35.08827907484161 39.0 36.0 41.0 24.5 41.0 18-19 34.971158764656735 39.0 35.0 41.0 24.0 41.0 20-21 34.86578274025717 39.0 35.0 41.0 22.5 41.0 22-23 34.64218034403983 39.0 34.5 40.0 20.5 41.0 24-25 34.44933237686893 39.0 34.0 40.0 19.0 41.0 26-27 34.48525605586664 39.0 34.5 40.0 18.5 41.0 28-29 34.335338684269985 39.0 34.0 40.0 17.5 41.0 30-31 34.147792218905444 39.0 34.0 40.0 16.5 41.0 32-33 33.93064284223907 38.0 34.0 40.0 15.5 41.0 34-35 33.56541341093889 38.0 33.0 40.0 11.0 41.0 36-37 33.24710377814671 38.0 33.0 40.0 8.5 41.0 38-39 33.07871895522401 38.0 33.0 40.0 8.0 41.0 40-41 32.86721365415134 38.0 32.5 40.0 6.5 41.0 42-43 32.62624015716244 38.0 32.0 40.0 2.0 41.0 44-45 32.34278406159958 38.0 31.5 40.0 2.0 41.0 46-47 32.04361513918661 37.5 31.0 40.0 2.0 41.0 48-49 31.885733332324612 37.0 31.0 40.0 2.0 41.0 50-51 31.182362656742526 36.0 30.0 39.0 2.0 40.5 52-53 31.52018569234871 37.0 31.0 39.0 2.0 40.0 54-55 31.939370336218833 37.0 31.0 40.0 2.0 41.0 56-57 31.814522042018233 37.0 31.0 40.0 2.0 41.0 58-59 31.54411986096406 36.5 31.0 40.0 2.0 41.0 60-61 31.17373411722133 36.0 31.0 39.5 2.0 41.0 62-63 30.766469114829007 35.5 30.0 39.0 2.0 41.0 64-65 30.29260377248854 35.0 29.5 39.0 2.0 40.0 66-67 29.90236763084907 35.0 29.0 38.0 2.0 40.0 68-69 29.465046745412334 35.0 29.0 37.5 2.0 40.0 70-71 29.021985102728905 34.5 28.0 37.0 2.0 39.0 72-73 28.554546698303273 34.0 27.5 36.0 2.0 39.0 74-75 28.118719697779795 34.0 26.5 36.0 2.0 38.5 76-77 27.62505192486607 34.0 26.0 35.0 2.0 37.5 78-79 27.19988657587566 34.0 26.0 35.0 2.0 37.0 80-81 26.775830975867066 33.0 25.0 35.0 2.0 36.5 82-83 26.248244186163312 33.0 23.5 35.0 2.0 36.0 84-85 25.86743540368651 33.0 22.0 35.0 2.0 35.5 86-87 25.472589964638324 32.5 20.0 35.0 2.0 35.0 88-89 25.0055876527977 32.0 18.0 35.0 2.0 35.0 90-91 24.479266418461464 32.0 10.0 34.0 2.0 35.0 92-93 23.912846122860685 31.5 2.0 34.0 2.0 35.0 94-95 23.24851876650804 31.0 2.0 34.0 2.0 35.0 96-97 22.717571117199334 31.0 2.0 34.0 2.0 35.0 98 22.33174048336567 31.0 2.0 34.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1601721.0 3 227809.0 4 164956.0 5 134309.0 6 124133.0 7 122248.0 8 135502.0 9 154031.0 10 163782.0 11 172679.0 12 184440.0 13 202167.0 14 175892.0 15 176548.0 16 194348.0 17 215014.0 18 227498.0 19 221038.0 20 228719.0 21 243508.0 22 263851.0 23 289423.0 24 324023.0 25 366525.0 26 416579.0 27 479651.0 28 557490.0 29 654429.0 30 779075.0 31 947348.0 32 1185156.0 33 1534049.0 34 2111928.0 35 2940181.0 36 4311339.0 37 5479935.0 38 3413433.0 39 334115.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.00596758809395 16.713009546479913 12.372053978530483 24.908968886895646 2 16.683871779271918 18.548380070762583 38.716145657955494 26.051602492010005 3 20.19435386070639 23.12196550661004 27.450259947811684 29.23342068487189 4 13.527846929787493 14.565063482594201 34.95945537490289 36.94763421271542 5 15.259983886049222 36.2389544107727 32.78252850387965 15.718533199298435 6 35.22111458558136 32.98515754466681 17.15014353226071 14.643584337491125 7 31.603191281538763 29.8580253758648 19.606460043041384 18.93232329955505 8 28.772104827363105 33.24039651657174 18.683832071184327 19.303666584880826 9 28.041868956959608 15.229908112536364 18.065940352172337 38.662282578331684 10-11 27.012403749658944 24.344271319342567 26.486668826414846 22.156656104583647 12-13 27.43293672875895 21.392067306668384 26.869677535184504 24.30531842938816 14-15 24.45946403652626 22.971904869008185 23.942383371074634 28.626247723390925 16-17 25.03240845875039 25.89500109189846 24.524695939379107 24.54789450997204 18-19 25.01834122786003 25.34921721698831 25.78604495542885 23.84639659972281 20-21 25.68936653442974 24.509641069827058 25.552912994666354 24.248079401076847 22-23 25.318554363495753 24.282782456335006 25.47450108575326 24.92416209441598 24-25 24.97339317211271 24.514015108513977 25.53657242085955 24.97601929851376 26-27 24.770873293840985 24.687804379028723 25.551508891218088 24.9898134359122 28-29 24.894598431020153 24.944274575449004 25.303170961546872 24.857956031983967 30-31 25.271938340734874 24.713151409523455 25.304140791174074 24.7107694585676 32-33 25.003140182783763 24.738355200559262 25.370427090934033 24.888077525722945 34-35 25.089469938620784 24.83908622477754 25.444300533470503 24.627143303131177 36-37 25.123811852756084 24.760286099895506 25.379369740886553 24.736532306461854 38-39 25.224340063898744 24.792563481685253 25.24810520752711 24.734991246888892 40-41 25.267152718560908 24.58473794240183 25.398734989497495 24.749374349539764 42-43 25.00326985988327 24.68103814402146 25.3634766664236 24.952215329671663 44-45 24.882051441874133 24.75095216295689 25.402104233474354 24.964892161694625 46-47 25.10230774079029 24.552516781598506 25.271113517546546 25.074061960064654 48-49 25.00165152153454 24.712756952450786 25.248804372625717 25.03678715338896 50-51 24.894650648208298 24.883510667963687 25.296165608903276 24.925673074924738 52-53 25.004186414150574 24.790153445314637 25.303856207689968 24.90180393284482 54-55 24.742405761069826 24.63238515289176 25.612277159987862 25.01293192605055 56-57 24.853952103900394 24.714628703184996 25.32330711138081 25.108112081533797 58-59 24.9437628898994 24.719721216424002 25.38816489084027 24.94835100283633 60-61 25.09789329931732 24.6710991902144 25.47710564892494 24.75390186154334 62-63 24.972588795920593 24.686855451935063 25.509440636454663 24.83111511568968 64-65 24.860784646478493 24.571094898567786 25.503128857195616 25.06499159775811 66-67 24.87774271796428 24.78599903887422 25.32203975400752 25.014218489153983 68-69 24.82047095219256 24.58825662581334 25.539904175611444 25.051368246382655 70-71 24.831383487806175 24.460640369312582 25.549399253604864 25.15857688927638 72-73 24.725566279148264 24.78762791806536 25.310924471111484 25.175881331674887 74-75 24.66833528429756 24.782768772562562 25.482917488715152 25.06597845442473 76-77 24.694713771264894 24.425010763357893 25.515693441697447 25.364582023679773 78-79 24.633592802299937 24.44613355205653 25.59282859164693 25.3274450539966 80-81 24.79241254810455 24.628191726126445 25.353325653527637 25.22607007224137 82-83 24.856618610178234 24.600210857660038 25.45491453537645 25.08825599678528 84-85 24.770752522349184 24.65609448581546 25.367910719523806 25.20524227231155 86-87 24.58692027422014 24.770081923221884 25.395345244217022 25.247652558340956 88-89 24.614060391406497 24.43878036185145 25.51953078953137 25.427628457210684 90-91 24.754523125593387 24.399857179527977 25.5521533485598 25.293466346318837 92-93 24.74948058114921 24.486191680114764 25.559932260717037 25.204395478018988 94-95 24.771299881468767 24.318027367618637 25.52151636754741 25.38915638336519 96-97 24.617456627690242 24.290526514206306 25.597667692452735 25.494349165650714 98 24.644703269053473 24.24744916599293 25.481422515571246 25.626425049382355 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 462.0 1 459.0 2 1043.5 3 1776.0 4 1775.5 5 2019.0 6 3271.0 7 5711.5 8 8661.0 9 9875.0 10 9492.0 11 9760.5 12 10962.5 13 12373.0 14 14421.5 15 16675.0 16 18384.5 17 19600.5 18 20139.5 19 20268.5 20 20015.0 21 19795.0 22 20497.5 23 22294.0 24 25364.0 25 30615.0 26 38626.5 27 49078.0 28 63839.0 29 85639.0 30 114620.0 31 154332.0 32 205578.5 33 259648.5 34 322036.0 35 395426.5 36 465116.5 37 524465.0 38 583560.5 39 638502.5 40 690262.0 41 753137.0 42 829124.5 43 921230.5 44 1010797.0 45 1091527.0 46 1180163.0 47 1265394.5 48 1335610.5 49 1388738.5 50 1409497.0 51 1424520.5 52 1454723.0 53 1482218.5 54 1484709.5 55 1456961.5 56 1391584.5 57 1304823.0 58 1207547.5 59 1077680.5 60 934804.0 61 794330.5 62 660771.5 63 525621.0 64 397388.0 65 298525.5 66 226429.0 67 172258.0 68 131058.0 69 99902.5 70 73161.0 71 52433.0 72 37963.5 73 26601.5 74 18659.5 75 12523.0 76 7654.5 77 4412.5 78 2499.5 79 1427.5 80 872.5 81 584.0 82 441.5 83 337.0 84 262.5 85 210.5 86 165.0 87 150.0 88 126.5 89 103.5 90 95.0 91 88.0 92 79.5 93 65.0 94 62.0 95 51.0 96 39.0 97 31.0 98 19.5 99 6.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.48678091768959875 2 0.02848794917154806 3 0.0418990915008006 4 0.02822093424960987 5 0.03302720284449725 6 0.01703809501891292 7 0.04249033882794945 8 0.008830564918384345 9 0.0 10-11 4.768123606039063E-6 12-13 1.3350746096909378E-4 14-15 0.0021345300009701544 16-17 0.007109272296604244 18-19 0.05331874753726416 20-21 0.0880672430035415 22-23 0.09916266663479441 24-25 0.07878688509165414 26-27 0.08449273967354756 28-29 0.06767874646411846 30-31 0.044833076893049974 32-33 0.03719772162524608 34-35 0.3891202099907066 36-37 0.5712259761270859 38-39 0.5250832546169105 40-41 0.5190468101316651 42-43 0.4775593666355191 44-45 0.4519910984854023 46-47 0.442462798146001 48-49 0.4187795281948049 50-51 0.42850491097658927 52-53 0.48409328535032803 54-55 0.5006768192521319 56-57 0.46459801729976963 58-59 0.4413693084656827 60-61 0.452315330890613 62-63 0.44957048106806985 64-65 0.4721157588519579 66-67 0.5026301605560726 68-69 0.44024721004372813 70-71 0.40706424849476697 72-73 0.38628953394325477 74-75 0.37510192658895175 76-77 0.38498465744973537 78-79 0.37584893262056457 80-81 0.38149915909372084 82-83 0.39125632936621213 84-85 0.3678257699661362 86-87 0.37776253956112155 88-89 0.40114700709967244 90-91 0.3823129188558182 92-93 0.3831250892433802 94-95 0.38789639159848993 96-97 0.4026982366461705 98 0.3775527421224559 >>END_MODULE >>Sequence Length Distribution pass #Length Count 98 3.1458916E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.15259520581597 #Duplication Level Percentage of deduplicated Percentage of total 1 69.66031177441158 27.970423005888843 2 14.723094892853261 11.82340938819107 3 5.837639846588027 7.0318916915217216 4 2.8202200918460303 4.529566229568113 5 1.5976655093404335 3.2075208235420116 6 0.9860015719849892 2.375431319532689 7 0.7199931230995783 2.0236714695952016 8 0.5168944840493475 1.6603723985722039 9 0.3879640612111582 1.401998751379444 >10 2.389008806614713 17.911474051843896 >50 0.21614216486302051 6.042396382947092 >100 0.1342244410906819 10.016256050147412 >500 0.00828553610347379 2.2512204206752093 >1k 0.0025138899412256595 1.5472136963324838 >5k 7.961200492454125E-6 0.023220310203125975 >10k+ 3.184480196941633E-5 0.18393401005934462 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 6.357498141385418E-6 0.0 3.178749070692709E-6 2.8608741636234383E-5 2 0.0 9.536247212078128E-6 0.0 1.2714996282770836E-5 2.8608741636234383E-5 3 0.0 9.536247212078128E-6 0.0 1.5893745353463545E-5 3.178749070692709E-5 4 0.0 9.536247212078128E-6 0.0 4.4502486989697925E-5 3.49662397776198E-5 5 0.0 1.9072494424156256E-5 0.0 5.4038734201776056E-5 3.814498884831251E-5 6 6.357498141385418E-6 1.9072494424156256E-5 0.0 5.4038734201776056E-5 6.357498141385418E-5 7 6.357498141385418E-6 2.2251243494848963E-5 0.0 5.721748327246877E-5 6.675373048454689E-5 8 6.357498141385418E-6 2.2251243494848963E-5 0.0 6.039623234316148E-5 9.218372305008856E-5 9 6.357498141385418E-6 2.2251243494848963E-5 0.0 8.582622490870315E-5 9.218372305008856E-5 10-11 6.357498141385418E-6 2.8608741636234383E-5 0.0 1.048987193328594E-4 9.218372305008856E-5 12-13 1.5893745353463545E-5 2.8608741636234383E-5 0.0 1.398649591104792E-4 1.4463308271651828E-4 14-15 1.5893745353463545E-5 3.6555614312966156E-5 0.0 1.6211620260532818E-4 1.7800994795879173E-4 16-17 1.5893745353463545E-5 4.132373791900522E-5 0.0 2.3045930762522144E-4 2.1297618773641152E-4 18-19 1.74831198888099E-5 5.24493596664297E-5 0.0 2.8926616543303656E-4 2.3681680576660686E-4 20-21 1.9072494424156256E-5 5.562810873712241E-5 0.0 3.5443052138223706E-4 2.9085553996838285E-4 22-23 1.9072494424156256E-5 6.039623234316148E-5 0.0 4.3707799722024753E-4 3.353580269580808E-4 24-25 1.9072494424156256E-5 6.198560687850783E-5 0.0 5.46744840159146E-4 3.878073866245105E-4 26-27 1.9072494424156256E-5 6.357498141385418E-5 0.0 6.627691812394298E-4 3.94164884765896E-4 28-29 1.9072494424156256E-5 6.357498141385418E-5 0.0 0.0012476590102468883 4.132373791900522E-4 30-31 1.9072494424156256E-5 6.834310501989325E-5 0.0 0.0036031120716301856 4.2277362640213035E-4 32-33 1.9072494424156256E-5 7.311122862593231E-5 0.0 0.008255211336588965 4.656867388564819E-4 34-35 2.7019367100888028E-5 7.311122862593231E-5 1.5893745353463546E-6 0.013740142858069236 5.038317277047944E-4 36-37 2.8608741636234383E-5 7.787935223197138E-5 4.768123606039064E-6 0.02395028487313422 5.117786003815261E-4 38-39 2.8608741636234383E-5 8.582622490870315E-5 6.357498141385418E-6 0.04327707922294589 5.403873420177605E-4 40-41 2.8608741636234383E-5 9.218372305008856E-5 6.357498141385418E-6 0.06854018746227619 5.531023383005314E-4 42-43 2.8608741636234383E-5 1.0171997026216669E-4 6.357498141385418E-6 0.09390978379547471 5.642279600479559E-4 44-45 2.8608741636234383E-5 1.0171997026216669E-4 6.357498141385418E-6 0.122995337792313 6.150879451790393E-4 46-47 3.178749070692709E-5 1.0807746840355211E-4 6.357498141385418E-6 0.15847017742124364 6.611798067040835E-4 48-49 3.49662397776198E-5 1.0807746840355211E-4 6.357498141385418E-6 0.19981139846013768 7.056822936937814E-4 50-51 3.49662397776198E-5 1.0807746840355211E-4 6.357498141385418E-6 0.24889764160977446 7.21576039047245E-4 52-53 3.49662397776198E-5 1.1284559200959118E-4 6.357498141385418E-6 0.30152342184962766 7.803828968550601E-4 54-55 3.6555614312966156E-5 1.3350746096909378E-4 6.357498141385418E-6 0.35867574076614717 8.248853838447581E-4 56-57 3.814498884831251E-5 1.398649591104792E-4 6.357498141385418E-6 0.4242739959634973 8.503153764102997E-4 58-59 3.814498884831251E-5 1.430437081811719E-4 6.357498141385418E-6 0.5029400885904651 8.709772453698024E-4 60-61 3.814498884831251E-5 1.4622245725186462E-4 6.357498141385418E-6 0.5931418615949768 8.884603652586122E-4 62-63 3.814498884831251E-5 1.4781183178721097E-4 6.357498141385418E-6 0.6926192243877698 9.313734777129638E-4 64-65 3.814498884831251E-5 1.5734807899928912E-4 6.357498141385418E-6 0.7919932778357652 9.345522267836565E-4 66-67 3.9734363383658866E-5 1.7006307528205997E-4 6.357498141385418E-6 0.9062852006725216 9.695184665612763E-4 68-69 4.132373791900522E-5 1.7324182435275265E-4 6.357498141385418E-6 1.0397958403906862 9.99716582732857E-4 70-71 4.132373791900522E-5 1.7642057342344536E-4 6.357498141385418E-6 1.1914825672950715 0.0010553446914699795 72-73 4.132373791900522E-5 1.780099479587917E-4 6.357498141385418E-6 1.3482902589523427 0.0011522965381261072 74-75 4.132373791900522E-5 1.780099479587917E-4 6.357498141385418E-6 1.5090014544684247 0.0012047458977925366 76-77 4.132373791900522E-5 1.811886970294844E-4 6.357498141385418E-6 1.6867904793668034 0.001233354639428771 78-79 4.132373791900522E-5 1.811886970294844E-4 6.357498141385418E-6 1.894998543497176 0.0012524271338529274 80-81 5.562810873712241E-5 1.811886970294844E-4 9.536247212078128E-6 2.1230737893193776 0.0012842146245598545 82-83 5.721748327246877E-5 1.859568206355235E-4 1.2714996282770836E-5 2.36643246067347 0.0013605046022564795 84-85 5.721748327246877E-5 1.954930678476016E-4 1.2714996282770836E-5 2.614122177636381 0.0013668621003978649 86 5.721748327246877E-5 2.0026119145364067E-4 1.2714996282770836E-5 2.806031205906777 0.0013700408494685577 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 50295 0.0 44.89513 1 GGTATCA 27010 0.0 42.370537 1 TCAACGC 64480 0.0 34.388584 4 CAACGCA 65810 0.0 33.68663 5 TATCAAC 67015 0.0 33.213894 2 ATCAACG 67610 0.0 32.826572 3 AACGCAG 70165 0.0 31.843538 6 GTACATG 129730 0.0 29.166357 1 TACATGG 133615 0.0 27.948431 2 ACATGGG 137720 0.0 26.519205 3 ACGCAGA 85745 0.0 25.910091 7 CGCAGAG 90405 0.0 24.463308 8 CATGGGG 108910 0.0 23.479986 4 TACCTGG 28490 0.0 22.151722 2 GTACCTG 31320 0.0 21.159296 1 GCAGAGT 103580 0.0 20.921179 9 ATGGGGG 60430 0.0 20.854845 5 GAGTACA 91410 0.0 19.331263 1 AGTACAT 88860 0.0 18.638145 2 AGAGTAC 89475 0.0 18.571548 10-11 >>END_MODULE