SRR2936816.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936816.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	64059
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	879	1.3721725284503348	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	540	0.8429728843722194	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	202	0.31533430119108946	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	178	0.2778688396634353	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	159	0.24820868262070903	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	157	0.24508656082673783	No Hit
GAATCTATCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	139	0.2169874646809972	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	89	0.13893441983171764	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88	0.13737335893473204	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	77	0.12020168906789054	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTT	70	0.1092742627889914	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	66	0.10303001920104903	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	66	0.10303001920104903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCACTT	25	3.849562E-5	45.000004	4
AACAAGC	50	2.1827873E-11	45.000004	13
TGTCAGG	25	3.849562E-5	45.000004	2
TACTGGG	50	2.1827873E-11	45.000004	41
ACAAGCG	50	2.1827873E-11	45.000004	14
CGAGATA	50	2.1827873E-11	45.000004	19
GGTGTTC	25	3.849562E-5	45.000004	9
CAAGCGA	50	2.1827873E-11	45.000004	15
GACTAGG	25	3.849562E-5	45.000004	3
GAGAAAC	45	3.7289283E-10	45.0	9
ACGCAGG	20	6.983456E-4	45.0	3
GGATCGC	20	6.983456E-4	45.0	8
CGTAGGG	20	6.983456E-4	45.0	3
GAATGTC	45	3.7289283E-10	45.0	27
GAATGCA	20	6.983456E-4	45.0	1
GCAACAT	20	6.983456E-4	45.0	18
GGGAGCC	20	6.983456E-4	45.0	9
CAGGGCC	35	1.1880729E-7	45.0	5
GTCTTAC	40	6.6429493E-9	45.0	31
GGCCAAA	20	6.983456E-4	45.0	1